Wall clock time and date at job start Wed Apr 1 2020 05:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42895 * 109.47057 * 2 1 4 4 C 1.35644 * 116.99868 * 179.97438 * 3 2 1 5 5 C 1.39348 * 120.54449 * 359.71666 * 4 3 2 6 6 C 1.38300 * 118.44121 * 179.80146 * 5 4 3 7 7 C 1.38766 * 119.44362 * 0.48086 * 6 5 4 8 8 N 1.31368 * 121.06895 * 359.76517 * 7 6 5 9 9 C 1.32862 * 121.69960 * 359.97438 * 8 7 6 10 10 C 1.47826 * 119.78634 * 180.02562 * 9 8 7 11 11 O 1.21559 * 119.99990 * 185.64412 * 10 9 8 12 12 N 1.34773 * 119.99973 * 5.63367 * 10 9 8 13 13 C 1.48349 * 128.19601 * 5.31426 * 12 10 9 14 14 C 1.54907 * 104.07247 * 138.25508 * 13 12 10 15 15 H 1.09005 * 111.87709 * 264.27078 * 14 13 12 16 16 C 1.53563 * 109.66203 * 139.80937 * 14 13 12 17 17 C 1.53961 * 106.03067 * 228.77879 * 16 14 13 18 18 C 1.56130 * 104.97418 * 29.86628 * 17 16 14 19 19 H 1.08998 * 109.98110 * 211.62151 * 18 17 16 20 20 N 1.46500 * 111.32510 * 89.22217 * 18 17 16 21 21 C 1.36944 * 120.00106 * 144.62864 * 20 18 17 22 22 H 1.08002 * 119.99993 * 0.02562 * 21 20 18 23 23 C 1.38807 * 119.99922 * 179.97438 * 21 20 18 24 24 N 1.31623 * 120.00301 * 0.02562 * 23 21 20 25 25 Si 1.86808 * 119.99670 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47248 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.46954 * 120.00587 * 25 23 21 28 28 H 1.48501 * 109.46744 * 240.00053 * 25 23 21 29 29 C 1.53555 * 104.96944 * 330.07824 * 18 17 16 30 30 H 1.08998 * 111.66222 * 255.73773 * 29 18 17 31 31 C 1.48354 * 128.19206 * 185.62799 * 12 10 9 32 32 H 1.09006 * 109.46997 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47347 * 300.00070 * 1 2 3 34 34 H 1.08998 * 109.47076 * 60.00617 * 1 2 3 35 35 H 1.08998 * 109.46986 * 239.99527 * 2 1 3 36 36 H 1.09005 * 109.47025 * 120.00070 * 2 1 3 37 37 H 1.08001 * 120.77549 * 0.02562 * 5 4 3 38 38 H 1.07997 * 120.27495 * 180.19596 * 6 5 4 39 39 H 1.08005 * 119.46208 * 179.74238 * 7 6 5 40 40 H 1.09005 * 110.47023 * 256.99045 * 13 12 10 41 41 H 1.09001 * 110.46950 * 19.59281 * 13 12 10 42 42 H 1.08993 * 110.14026 * 347.92085 * 16 14 13 43 43 H 1.08999 * 110.14260 * 109.63969 * 16 14 13 44 44 H 1.08998 * 110.35719 * 148.41431 * 17 16 14 45 45 H 1.09005 * 110.35797 * 270.60762 * 17 16 14 46 46 H 0.96997 * 120.00152 * 324.62593 * 20 18 17 47 47 H 0.96996 * 119.99758 * 180.02562 * 24 23 21 48 48 H 1.08997 * 110.47383 * 340.40631 * 31 12 10 49 49 H 1.08999 * 110.46882 * 102.88103 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3510 1.5249 0.0005 5 6 4.2103 0.4280 0.0070 6 6 5.5739 0.6593 0.0031 7 6 6.0442 1.9648 0.0031 8 7 5.2154 2.9841 0.0021 9 6 3.8979 2.8125 0.0006 10 6 3.0040 3.9899 -0.0010 11 8 1.8020 3.8406 0.1011 12 7 3.5219 5.2289 -0.1156 13 6 4.9340 5.6143 -0.3565 14 6 4.8390 6.7709 -1.3826 15 1 4.9675 6.4177 -2.4058 16 6 5.8595 7.8620 -1.0273 17 6 5.0866 9.1931 -1.0575 18 6 3.6238 8.8193 -0.6599 19 1 2.9203 9.4854 -1.1594 20 7 3.4340 8.8806 0.7915 21 6 2.2389 9.3046 1.3085 22 1 1.4361 9.5935 0.6463 23 6 2.0589 9.3622 2.6836 24 7 3.0370 9.0096 3.4908 25 14 0.4284 9.9399 3.3888 26 1 -0.4993 10.2766 2.2793 27 1 -0.1627 8.8595 4.2185 28 1 0.6515 11.1437 4.2294 29 6 3.4331 7.3793 -1.1577 30 1 2.8278 7.3436 -2.0635 31 6 2.8155 6.5303 -0.0242 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8899 34 1 -0.3633 0.5137 -0.8900 35 1 1.8933 -0.5139 -0.8899 36 1 1.8933 -0.5139 0.8900 37 1 3.8206 -0.5793 0.0113 38 1 6.2667 -0.1691 0.0047 39 1 7.1090 2.1459 0.0042 40 1 5.3982 5.9587 0.5677 41 1 5.4917 4.7765 -0.7751 42 1 6.2654 7.6862 -0.0311 43 1 6.6634 7.8780 -1.7632 44 1 5.5045 9.8908 -0.3318 45 1 5.1147 9.6253 -2.0578 46 1 4.1548 8.6208 1.3863 47 1 2.9111 9.0495 4.4517 48 1 1.7463 6.3961 -0.1877 49 1 2.9967 6.9952 0.9449 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026436393.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:33 Heat of formation + Delta-G solvation = -0.398618 kcal Electronic energy + Delta-G solvation = -31299.772582 eV Core-core repulsion = 27228.219995 eV Total energy + Delta-G solvation = -4071.552587 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.00138 -39.61636 -38.42773 -37.77294 -34.70639 -33.33935 -32.53726 -32.25445 -30.81471 -30.21545 -28.79144 -28.02976 -25.28373 -24.97997 -24.27066 -23.14639 -22.74015 -22.25932 -19.85761 -19.45433 -18.38349 -18.23783 -17.38834 -17.21339 -16.70346 -16.42046 -15.72419 -15.28694 -15.01324 -14.82684 -14.56297 -14.52196 -14.02605 -13.66951 -13.47492 -13.37103 -13.13262 -12.86498 -12.73711 -12.62830 -12.46664 -12.35869 -12.08956 -11.56407 -11.52044 -11.16601 -11.12457 -10.87440 -10.75160 -10.60741 -10.42484 -10.19069 -10.04427 -10.00695 -9.96846 -9.83681 -9.68892 -9.55827 -9.15205 -8.91990 -8.60045 -7.96566 -6.87464 -5.76361 -3.05604 0.59681 1.05420 2.89833 3.00853 3.40109 3.47228 3.53916 3.55247 3.90536 4.21182 4.37004 4.49142 4.61854 4.66472 4.71528 4.82263 4.92696 4.96447 4.99230 5.13417 5.24807 5.28753 5.42270 5.60552 5.61115 5.67178 5.73448 5.78037 5.84625 5.89967 5.92427 5.94675 6.10726 6.17122 6.20657 6.25493 6.37459 6.44387 6.51654 6.55853 6.69073 6.78561 6.80628 7.01188 7.04177 7.09926 7.40834 7.65752 7.75426 8.17606 8.42183 8.67768 9.54110 10.09378 10.44073 11.45406 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010626 B = 0.003551 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2634.442368 B = 7883.281016 C = 9490.247349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.047 3.953 3 O -0.270 6.270 4 C 0.136 3.864 5 C -0.178 4.178 6 C -0.113 4.113 7 C 0.052 3.948 8 N -0.412 5.412 9 C 0.057 3.943 10 C 0.581 3.419 11 O -0.526 6.526 12 N -0.602 5.602 13 C 0.109 3.891 14 C -0.102 4.102 15 H 0.072 0.928 16 C -0.110 4.110 17 C -0.133 4.133 18 C 0.179 3.821 19 H 0.059 0.941 20 N -0.710 5.710 21 C -0.244 4.244 22 H 0.073 0.927 23 C -0.008 4.008 24 N -0.929 5.929 25 Si 0.904 3.096 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.292 1.292 29 C -0.125 4.125 30 H 0.067 0.933 31 C 0.105 3.895 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.143 0.857 38 H 0.140 0.860 39 H 0.164 0.836 40 H 0.071 0.929 41 H 0.097 0.903 42 H 0.067 0.933 43 H 0.055 0.945 44 H 0.068 0.932 45 H 0.058 0.942 46 H 0.385 0.615 47 H 0.255 0.745 48 H 0.064 0.936 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.147 -18.845 -10.560 22.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.029 4.029 3 O -0.180 6.180 4 C 0.085 3.915 5 C -0.205 4.205 6 C -0.133 4.133 7 C -0.108 4.108 8 N -0.124 5.124 9 C -0.082 4.082 10 C 0.368 3.632 11 O -0.402 6.402 12 N -0.334 5.334 13 C -0.014 4.014 14 C -0.121 4.121 15 H 0.090 0.910 16 C -0.148 4.148 17 C -0.172 4.172 18 C 0.067 3.933 19 H 0.078 0.922 20 N -0.350 5.350 21 C -0.375 4.375 22 H 0.090 0.910 23 C -0.205 4.205 24 N -0.577 5.577 25 Si 0.735 3.265 26 H -0.205 1.205 27 H -0.219 1.219 28 H -0.220 1.220 29 C -0.148 4.148 30 H 0.085 0.915 31 C -0.016 4.016 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.161 0.839 38 H 0.158 0.842 39 H 0.181 0.819 40 H 0.089 0.911 41 H 0.115 0.885 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.087 0.913 45 H 0.077 0.923 46 H 0.220 0.780 47 H 0.065 0.935 48 H 0.082 0.918 49 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 6.349 -17.933 -10.421 21.691 hybrid contribution -0.705 -1.077 0.636 1.436 sum 5.645 -19.010 -9.785 22.113 Atomic orbital electron populations 1.21738 0.92227 1.02491 1.04309 1.22928 0.96777 0.82158 1.01014 1.86459 1.16850 1.28422 1.86233 1.20015 0.84272 0.93700 0.93464 1.21716 0.94191 0.98577 1.05987 1.22156 0.95179 0.98875 0.97093 1.22781 1.00072 0.87963 0.99999 1.67884 1.01859 1.34491 1.08161 1.20885 0.90280 0.91287 1.05742 1.17106 0.86565 0.81122 0.78450 1.90820 1.13830 1.84709 1.50889 1.49010 1.10971 1.05098 1.68288 1.22973 0.82759 0.97246 0.98384 1.22651 0.95766 0.95484 0.98245 0.90994 1.22049 0.96913 0.94732 1.01131 1.22911 0.97067 0.96758 1.00480 1.21051 0.93730 0.92153 0.86329 0.92237 1.42479 1.15204 1.77594 0.99732 1.19300 0.91199 1.36706 0.90264 0.90954 1.24716 0.97647 1.02027 0.96074 1.69662 1.31368 1.53979 1.02671 0.86167 0.83469 0.77885 0.79002 1.20480 1.21851 1.21954 1.23255 0.94923 0.98953 0.97674 0.91500 1.23245 0.96216 0.79231 1.02931 0.90505 0.91079 0.91237 0.92108 0.92017 0.83900 0.84194 0.81884 0.91062 0.88546 0.91472 0.92625 0.91318 0.92314 0.78032 0.93514 0.91753 0.84995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 10.28 37.16 0.38 -0.97 16 2 C 0.05 0.45 5.48 37.16 0.20 0.66 16 3 O -0.27 -4.08 8.22 -40.51 -0.33 -4.41 16 4 C 0.14 1.96 6.71 -38.55 -0.26 1.70 16 5 C -0.18 -1.79 9.13 -39.15 -0.36 -2.14 16 6 C -0.11 -0.96 10.10 -39.36 -0.40 -1.36 16 7 C 0.05 0.53 11.17 -17.55 -0.20 0.34 16 8 N -0.41 -5.90 6.80 -9.71 -0.07 -5.97 16 9 C 0.06 0.96 6.72 -82.88 -0.56 0.40 16 10 C 0.58 11.88 7.89 -12.34 -0.10 11.78 16 11 O -0.53 -12.31 15.43 -16.56 -0.26 -12.57 16 12 N -0.60 -11.86 3.31 -169.69 -0.56 -12.42 16 13 C 0.11 1.81 5.90 -2.02 -0.01 1.80 16 14 C -0.10 -1.58 3.91 -88.35 -0.35 -1.92 16 15 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 16 C -0.11 -1.59 6.39 -25.94 -0.17 -1.76 16 17 C -0.13 -2.13 6.60 -24.55 -0.16 -2.29 16 18 C 0.18 3.45 3.59 -65.97 -0.24 3.22 16 19 H 0.06 1.17 7.98 -51.93 -0.41 0.76 16 20 N -0.71 -16.85 3.07 -51.53 -0.16 -17.01 16 21 C -0.24 -6.53 9.02 -15.06 -0.14 -6.67 16 22 H 0.07 1.92 7.79 -52.49 -0.41 1.51 16 23 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 24 N -0.93 -27.55 13.06 55.49 0.72 -26.83 16 25 Si 0.90 22.60 29.55 -169.99 -5.02 17.58 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 27 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 28 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 29 C -0.13 -2.28 3.87 -88.58 -0.34 -2.62 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 31 C 0.10 2.24 6.12 -2.24 -0.01 2.22 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.46 7.71 -51.93 -0.40 0.06 16 36 H 0.06 0.49 7.68 -51.93 -0.40 0.09 16 37 H 0.14 0.99 6.46 -52.49 -0.34 0.65 16 38 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 39 H 0.16 1.14 8.06 -52.48 -0.42 0.72 16 40 H 0.07 1.24 7.28 -51.93 -0.38 0.86 16 41 H 0.10 1.46 5.57 -51.93 -0.29 1.17 16 42 H 0.07 1.02 7.20 -51.93 -0.37 0.64 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.07 1.17 8.12 -51.93 -0.42 0.75 16 45 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 46 H 0.39 9.79 7.80 -40.82 -0.32 9.47 16 47 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 48 H 0.06 1.49 7.85 -51.93 -0.41 1.08 16 49 H 0.13 3.29 5.18 -51.93 -0.27 3.02 16 LS Contribution 387.18 15.07 5.83 5.83 Total: -1.00 -33.43 387.18 -9.99 -43.41 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -7.36 Total: 10.32 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -2.79 Total: 2.06 kcal Atomic # 7 Polarization: -62.16 SS G_CDS: -0.06 Total: -62.22 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.59 Total: -16.98 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.43 -9.99 -43.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026436393.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.012 kcal (2) G-P(sol) polarization free energy of solvation -33.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds