Wall clock time and date at job start Wed Apr 1 2020 05:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42895 * 109.47057 * 2 1 4 4 C 1.35644 * 116.99868 * 179.97438 * 3 2 1 5 5 C 1.39348 * 120.54449 * 359.71666 * 4 3 2 6 6 C 1.38300 * 118.44121 * 179.80146 * 5 4 3 7 7 C 1.38766 * 119.44362 * 0.48086 * 6 5 4 8 8 N 1.31368 * 121.06895 * 359.76517 * 7 6 5 9 9 C 1.32862 * 121.69960 * 359.97438 * 8 7 6 10 10 C 1.47826 * 119.78634 * 180.02562 * 9 8 7 11 11 O 1.21559 * 119.99990 * 185.64412 * 10 9 8 12 12 N 1.34773 * 119.99973 * 5.63367 * 10 9 8 13 13 C 1.48349 * 128.19601 * 5.31426 * 12 10 9 14 14 C 1.54907 * 104.07247 * 138.25508 * 13 12 10 15 15 H 1.09005 * 111.87709 * 264.27078 * 14 13 12 16 16 C 1.53563 * 109.66203 * 139.80937 * 14 13 12 17 17 C 1.53961 * 106.03067 * 228.77879 * 16 14 13 18 18 C 1.56130 * 104.97418 * 29.86628 * 17 16 14 19 19 H 1.08998 * 109.98110 * 211.62151 * 18 17 16 20 20 N 1.46500 * 111.32510 * 89.22217 * 18 17 16 21 21 C 1.36944 * 120.00106 * 144.62864 * 20 18 17 22 22 H 1.08002 * 119.99993 * 0.02562 * 21 20 18 23 23 C 1.38807 * 119.99922 * 179.97438 * 21 20 18 24 24 N 1.31623 * 120.00301 * 0.02562 * 23 21 20 25 25 Si 1.86808 * 119.99670 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47248 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.46954 * 120.00587 * 25 23 21 28 28 H 1.48501 * 109.46744 * 240.00053 * 25 23 21 29 29 C 1.53555 * 104.96944 * 330.07824 * 18 17 16 30 30 H 1.08998 * 111.66222 * 255.73773 * 29 18 17 31 31 C 1.48354 * 128.19206 * 185.62799 * 12 10 9 32 32 H 1.09006 * 109.46997 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47347 * 300.00070 * 1 2 3 34 34 H 1.08998 * 109.47076 * 60.00617 * 1 2 3 35 35 H 1.08998 * 109.46986 * 239.99527 * 2 1 3 36 36 H 1.09005 * 109.47025 * 120.00070 * 2 1 3 37 37 H 1.08001 * 120.77549 * 0.02562 * 5 4 3 38 38 H 1.07997 * 120.27495 * 180.19596 * 6 5 4 39 39 H 1.08005 * 119.46208 * 179.74238 * 7 6 5 40 40 H 1.09005 * 110.47023 * 256.99045 * 13 12 10 41 41 H 1.09001 * 110.46950 * 19.59281 * 13 12 10 42 42 H 1.08993 * 110.14026 * 347.92085 * 16 14 13 43 43 H 1.08999 * 110.14260 * 109.63969 * 16 14 13 44 44 H 1.08998 * 110.35719 * 148.41431 * 17 16 14 45 45 H 1.09005 * 110.35797 * 270.60762 * 17 16 14 46 46 H 0.96997 * 120.00152 * 324.62593 * 20 18 17 47 47 H 0.96996 * 119.99758 * 180.02562 * 24 23 21 48 48 H 1.08997 * 110.47383 * 340.40631 * 31 12 10 49 49 H 1.08999 * 110.46882 * 102.88103 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3510 1.5249 0.0005 5 6 4.2103 0.4280 0.0070 6 6 5.5739 0.6593 0.0031 7 6 6.0442 1.9648 0.0031 8 7 5.2154 2.9841 0.0021 9 6 3.8979 2.8125 0.0006 10 6 3.0040 3.9899 -0.0010 11 8 1.8020 3.8406 0.1011 12 7 3.5219 5.2289 -0.1156 13 6 4.9340 5.6143 -0.3565 14 6 4.8390 6.7709 -1.3826 15 1 4.9675 6.4177 -2.4058 16 6 5.8595 7.8620 -1.0273 17 6 5.0866 9.1931 -1.0575 18 6 3.6238 8.8193 -0.6599 19 1 2.9203 9.4854 -1.1594 20 7 3.4340 8.8806 0.7915 21 6 2.2389 9.3046 1.3085 22 1 1.4361 9.5935 0.6463 23 6 2.0589 9.3622 2.6836 24 7 3.0370 9.0096 3.4908 25 14 0.4284 9.9399 3.3888 26 1 -0.4993 10.2766 2.2793 27 1 -0.1627 8.8595 4.2185 28 1 0.6515 11.1437 4.2294 29 6 3.4331 7.3793 -1.1577 30 1 2.8278 7.3436 -2.0635 31 6 2.8155 6.5303 -0.0242 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8899 34 1 -0.3633 0.5137 -0.8900 35 1 1.8933 -0.5139 -0.8899 36 1 1.8933 -0.5139 0.8900 37 1 3.8206 -0.5793 0.0113 38 1 6.2667 -0.1691 0.0047 39 1 7.1090 2.1459 0.0042 40 1 5.3982 5.9587 0.5677 41 1 5.4917 4.7765 -0.7751 42 1 6.2654 7.6862 -0.0311 43 1 6.6634 7.8780 -1.7632 44 1 5.5045 9.8908 -0.3318 45 1 5.1147 9.6253 -2.0578 46 1 4.1548 8.6208 1.3863 47 1 2.9111 9.0495 4.4517 48 1 1.7463 6.3961 -0.1877 49 1 2.9967 6.9952 0.9449 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026436393.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:32 Heat of formation + Delta-G solvation = -21.120846 kcal Electronic energy + Delta-G solvation = -31300.671165 eV Core-core repulsion = 27228.219995 eV Total energy + Delta-G solvation = -4072.451170 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.03352 -41.00860 -39.43590 -39.19379 -36.40330 -35.06543 -33.44153 -33.06094 -32.67639 -31.21651 -30.18705 -29.64727 -26.74423 -26.20846 -25.39635 -24.91225 -23.92011 -23.10454 -21.19808 -20.79307 -19.84850 -19.37581 -19.17965 -18.46861 -17.75257 -17.35872 -17.07570 -16.84664 -16.48178 -16.09810 -15.97268 -15.57274 -15.35409 -15.08092 -14.99098 -14.67289 -14.40858 -14.04701 -13.88059 -13.65301 -13.60635 -13.52178 -13.34832 -13.06440 -13.02445 -12.85266 -12.34065 -12.30290 -12.18461 -12.14824 -11.89490 -11.82316 -11.54042 -11.41565 -11.36324 -11.26756 -11.16521 -10.93828 -10.81874 -10.30445 -9.76724 -9.43261 -8.85256 -7.94273 -5.20240 -0.35797 0.22741 1.43011 1.45860 1.53454 1.76280 1.98759 2.11168 2.55027 2.81344 3.14934 3.39614 3.52983 3.59548 3.69891 3.77408 3.89067 3.98542 3.99179 4.11097 4.12963 4.20691 4.29168 4.40652 4.42246 4.54172 4.58439 4.66887 4.70382 4.74399 4.83071 4.85826 4.88075 4.91058 4.98344 4.99931 5.14124 5.17847 5.18170 5.21661 5.34987 5.43961 5.48548 5.51413 5.52561 5.62274 5.70122 6.25027 6.28937 6.64610 6.77296 7.18533 7.35869 8.11996 8.34385 9.28535 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010626 B = 0.003551 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2634.442368 B = 7883.281016 C = 9490.247349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.037 3.963 3 O -0.312 6.312 4 C 0.123 3.877 5 C -0.170 4.170 6 C -0.084 4.084 7 C 0.052 3.948 8 N -0.434 5.434 9 C 0.008 3.992 10 C 0.568 3.432 11 O -0.577 6.577 12 N -0.609 5.609 13 C 0.115 3.885 14 C -0.090 4.090 15 H 0.099 0.901 16 C -0.102 4.102 17 C -0.122 4.122 18 C 0.169 3.831 19 H 0.054 0.946 20 N -0.716 5.716 21 C -0.231 4.231 22 H 0.073 0.927 23 C -0.069 4.069 24 N -0.964 5.964 25 Si 0.958 3.042 26 H -0.268 1.268 27 H -0.303 1.303 28 H -0.290 1.290 29 C -0.118 4.118 30 H 0.075 0.925 31 C 0.109 3.891 32 H 0.112 0.888 33 H 0.048 0.952 34 H 0.053 0.947 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.180 0.820 38 H 0.193 0.807 39 H 0.201 0.799 40 H 0.056 0.944 41 H 0.118 0.882 42 H 0.056 0.944 43 H 0.094 0.906 44 H 0.056 0.944 45 H 0.089 0.911 46 H 0.375 0.625 47 H 0.248 0.752 48 H 0.029 0.971 49 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.138 -21.586 -12.767 27.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.037 4.037 3 O -0.223 6.223 4 C 0.072 3.928 5 C -0.196 4.196 6 C -0.104 4.104 7 C -0.110 4.110 8 N -0.146 5.146 9 C -0.127 4.127 10 C 0.357 3.643 11 O -0.457 6.457 12 N -0.340 5.340 13 C -0.007 4.007 14 C -0.110 4.110 15 H 0.117 0.883 16 C -0.140 4.140 17 C -0.161 4.161 18 C 0.059 3.941 19 H 0.073 0.927 20 N -0.355 5.355 21 C -0.363 4.363 22 H 0.090 0.910 23 C -0.261 4.261 24 N -0.614 5.614 25 Si 0.788 3.212 26 H -0.192 1.192 27 H -0.231 1.231 28 H -0.217 1.217 29 C -0.140 4.140 30 H 0.094 0.906 31 C -0.014 4.014 32 H 0.130 0.870 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.197 0.803 38 H 0.210 0.790 39 H 0.218 0.782 40 H 0.074 0.926 41 H 0.135 0.865 42 H 0.075 0.925 43 H 0.112 0.888 44 H 0.075 0.925 45 H 0.108 0.892 46 H 0.208 0.792 47 H 0.057 0.943 48 H 0.048 0.952 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 9.341 -20.652 -12.689 25.977 hybrid contribution -1.581 -0.414 1.267 2.068 sum 7.760 -21.067 -11.422 25.189 Atomic orbital electron populations 1.21796 0.92415 1.04147 1.02416 1.23273 0.96777 0.80472 1.03183 1.86419 1.17858 1.31589 1.86466 1.20244 0.84663 0.94159 0.93770 1.22168 0.94380 0.98717 1.04369 1.22757 0.95188 0.99600 0.92831 1.23558 1.01163 0.88119 0.98193 1.67697 1.01074 1.36707 1.09165 1.20287 0.90965 0.90447 1.11050 1.17961 0.86870 0.82326 0.77121 1.90755 1.16152 1.85699 1.53104 1.49146 1.12039 1.04458 1.68321 1.23075 0.81088 0.98383 0.98181 1.22677 0.93884 0.95115 0.99278 0.88262 1.22022 0.97231 0.92919 1.01816 1.22815 0.94072 0.97556 1.01621 1.21338 0.96405 0.92687 0.83696 0.92739 1.42538 1.13861 1.77427 1.01630 1.19579 0.92151 1.34253 0.90315 0.90954 1.25361 1.00377 1.03686 0.96702 1.69793 1.33006 1.56342 1.02296 0.85290 0.80595 0.76937 0.78344 1.19237 1.23121 1.21699 1.23151 0.96858 0.97560 0.96425 0.90627 1.22876 0.94799 0.81261 1.02440 0.86962 0.93307 0.92807 0.89432 0.89978 0.80296 0.78994 0.78195 0.92587 0.86452 0.92543 0.88763 0.92512 0.89249 0.79242 0.94267 0.95246 0.88780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 10.28 71.98 0.74 -1.98 16 2 C 0.04 0.68 5.48 71.98 0.39 1.07 16 3 O -0.31 -9.75 8.22 -68.67 -0.56 -10.32 16 4 C 0.12 3.48 6.71 22.94 0.15 3.63 16 5 C -0.17 -2.77 9.13 22.55 0.21 -2.56 16 6 C -0.08 -0.98 10.10 22.41 0.23 -0.75 16 7 C 0.05 0.86 11.17 84.89 0.95 1.81 16 8 N -0.43 -11.91 6.80 -184.63 -1.26 -13.17 16 9 C 0.01 0.28 6.72 41.93 0.28 0.56 16 10 C 0.57 24.96 7.89 86.78 0.68 25.64 16 11 O -0.58 -29.64 15.43 17.02 0.26 -29.38 16 12 N -0.61 -25.47 3.31 -809.06 -2.68 -28.14 16 13 C 0.11 3.81 5.90 86.67 0.51 4.32 16 14 C -0.09 -2.65 3.91 -9.32 -0.04 -2.69 16 15 H 0.10 2.46 8.14 -2.38 -0.02 2.44 16 16 C -0.10 -2.69 6.39 31.11 0.20 -2.49 16 17 C -0.12 -3.68 6.60 32.01 0.21 -3.47 16 18 C 0.17 6.56 3.59 46.26 0.17 6.73 16 19 H 0.05 2.15 7.98 -2.39 -0.02 2.14 16 20 N -0.72 -35.42 3.07 -316.93 -0.97 -36.39 16 21 C -0.23 -12.90 9.02 84.03 0.76 -12.14 16 22 H 0.07 3.96 7.79 -2.91 -0.02 3.94 16 23 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 24 N -0.96 -59.92 13.06 21.65 0.28 -59.64 16 25 Si 0.96 48.35 29.55 68.60 2.03 50.38 16 26 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 27 H -0.30 -15.76 7.11 99.48 0.71 -15.06 16 28 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 29 C -0.12 -4.34 3.87 -9.47 -0.04 -4.38 16 30 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 31 C 0.11 5.01 6.12 86.53 0.53 5.53 16 32 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 33 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.09 1.09 7.71 -2.39 -0.02 1.08 16 36 H 0.08 1.13 7.68 -2.38 -0.02 1.11 16 37 H 0.18 1.53 6.46 -2.91 -0.02 1.51 16 38 H 0.19 0.31 8.06 -2.91 -0.02 0.29 16 39 H 0.20 1.72 8.06 -2.91 -0.02 1.69 16 40 H 0.06 2.01 7.28 -2.38 -0.02 2.00 16 41 H 0.12 3.42 5.57 -2.39 -0.01 3.40 16 42 H 0.06 1.63 7.20 -2.39 -0.02 1.62 16 43 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.06 1.87 8.12 -2.39 -0.02 1.86 16 45 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 46 H 0.37 20.03 7.80 -92.71 -0.72 19.30 16 47 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 48 H 0.03 1.49 7.85 -2.39 -0.02 1.48 16 49 H 0.09 5.10 5.18 -2.39 -0.01 5.09 16 Total: -1.00 -82.79 387.18 3.76 -79.03 By element: Atomic # 1 Polarization: 32.10 SS G_CDS: 0.25 Total: 32.35 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: 6.40 Total: 15.28 kcal Atomic # 7 Polarization: -132.72 SS G_CDS: -4.62 Total: -137.35 kcal Atomic # 8 Polarization: -39.39 SS G_CDS: -0.30 Total: -39.70 kcal Atomic # 14 Polarization: 48.35 SS G_CDS: 2.03 Total: 50.38 kcal Total: -82.79 3.76 -79.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026436393.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.914 kcal (2) G-P(sol) polarization free energy of solvation -82.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds