Wall clock time and date at job start Wed Apr 1 2020 05:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42901 * 109.47327 * 2 1 4 4 C 1.35670 * 117.00351 * 180.02562 * 3 2 1 5 5 C 1.38914 * 119.68713 * 180.02562 * 4 3 2 6 6 C 1.38384 * 119.11471 * 180.02562 * 5 4 3 7 7 C 1.38832 * 118.48068 * 359.97438 * 6 5 4 8 8 C 1.38038 * 119.29088 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.58242 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.47603 * 124.99857 * 9 8 7 11 11 O 1.21288 * 119.99521 * 0.02562 * 10 9 8 12 12 N 1.34768 * 120.00657 * 180.02562 * 10 9 8 13 13 C 1.47161 * 120.71323 * 180.02562 * 12 10 9 14 14 C 1.53885 * 108.03162 * 132.76036 * 13 12 10 15 15 H 1.09006 * 112.09989 * 181.91193 * 14 13 12 16 16 C 1.54547 * 107.82847 * 305.86989 * 14 13 12 17 17 C 1.55854 * 104.09598 * 89.27984 * 16 14 13 18 18 C 1.54545 * 105.00190 * 359.97438 * 17 16 14 19 19 H 1.08999 * 112.18406 * 146.41614 * 18 17 16 20 20 C 1.47165 * 120.70804 * 359.72274 * 12 10 9 21 21 N 1.48307 * 104.35339 * 24.71231 * 18 17 16 22 22 C 1.36946 * 128.07484 * 139.07878 * 21 18 17 23 23 H 1.08002 * 119.99438 * 194.96153 * 22 21 18 24 24 C 1.38805 * 119.99905 * 14.96586 * 22 21 18 25 25 N 1.31619 * 120.00280 * 9.26932 * 24 22 21 26 26 Si 1.86801 * 119.99598 * 189.27151 * 24 22 21 27 27 H 1.48498 * 109.47294 * 59.99879 * 26 24 22 28 28 H 1.48500 * 109.46954 * 179.97438 * 26 24 22 29 29 H 1.48499 * 109.47349 * 299.99665 * 26 24 22 30 30 N 1.31961 * 120.83944 * 0.27170 * 8 7 6 31 31 H 1.09002 * 109.47219 * 59.99934 * 1 2 3 32 32 H 1.09005 * 109.47456 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47414 * 300.00096 * 1 2 3 34 34 H 1.09009 * 109.47207 * 240.00159 * 2 1 3 35 35 H 1.09002 * 109.47219 * 120.00066 * 2 1 3 36 36 H 1.08001 * 120.44619 * 359.97438 * 5 4 3 37 37 H 1.07995 * 120.75935 * 179.97438 * 6 5 4 38 38 H 1.08002 * 120.34677 * 179.97438 * 7 6 5 39 39 H 1.08999 * 109.47277 * 244.99899 * 9 8 7 40 40 H 1.09004 * 109.47013 * 4.99751 * 9 8 7 41 41 H 1.09000 * 109.75056 * 252.38877 * 13 12 10 42 42 H 1.09000 * 109.74982 * 13.07385 * 13 12 10 43 43 H 1.08996 * 110.36570 * 207.91633 * 16 14 13 44 44 H 1.08999 * 110.36458 * 330.23085 * 16 14 13 45 45 H 1.09007 * 110.28362 * 241.10027 * 17 16 14 46 46 H 1.09004 * 110.39266 * 118.92846 * 17 16 14 47 47 H 1.09001 * 109.74633 * 346.87902 * 20 12 10 48 48 H 1.09003 * 109.74981 * 107.60244 * 20 12 10 49 49 H 0.96996 * 120.00075 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3513 1.5251 -0.0005 5 6 3.8752 2.8116 0.0000 6 6 5.2489 2.9793 -0.0011 7 6 6.0539 1.8481 -0.0022 8 6 5.4646 0.5999 -0.0026 9 6 6.3321 -0.6324 -0.0031 10 6 5.9552 -1.5128 1.1604 11 8 5.0688 -1.1732 1.9155 12 7 6.6028 -2.6774 1.3619 13 6 6.2470 -3.5493 2.4928 14 6 6.1107 -4.9870 1.9613 15 1 5.8142 -5.6867 2.7427 16 6 5.1065 -4.9641 0.7868 17 6 5.9930 -4.6902 -0.4654 18 6 7.4339 -4.5762 0.0817 19 1 8.1729 -4.9588 -0.6222 20 6 7.6764 -3.1075 0.4520 21 7 7.4097 -5.3517 1.3456 22 6 8.3640 -6.2057 1.8309 23 1 8.1220 -6.8852 2.6347 24 6 9.6422 -6.1978 1.2897 25 7 9.9922 -5.2535 0.4421 26 14 10.8655 -7.5273 1.7642 27 1 10.3235 -8.8568 1.3850 28 1 12.1488 -7.2955 1.0539 29 1 11.0966 -7.4868 3.2306 30 7 4.1512 0.4718 -0.0074 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5138 0.8900 36 1 3.2193 3.6696 0.0004 37 1 5.6847 3.9673 -0.0012 38 1 7.1296 1.9440 -0.0035 39 1 6.1861 -1.1792 -0.9347 40 1 7.3784 -0.3401 0.0864 41 1 7.0304 -3.5091 3.2496 42 1 5.3005 -3.2243 2.9249 43 1 4.6053 -5.9279 0.6974 44 1 4.3760 -4.1675 0.9278 45 1 5.6940 -3.7572 -0.9433 46 1 5.9195 -5.5176 -1.1712 47 1 7.6631 -2.4944 -0.4491 48 1 8.6415 -3.0110 0.9495 49 1 10.8852 -5.2483 0.0637 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029402414.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:58 Heat of formation + Delta-G solvation = 2.243975 kcal Electronic energy + Delta-G solvation = -31411.851617 eV Core-core repulsion = 27340.413622 eV Total energy + Delta-G solvation = -4071.437995 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.74141 -39.86736 -38.26377 -37.46705 -33.66976 -33.11221 -32.42086 -32.20457 -31.15547 -30.48375 -29.22784 -28.12648 -25.94365 -24.16567 -23.76460 -23.61104 -22.63987 -22.04395 -19.83077 -19.63592 -18.56339 -18.20481 -17.14339 -16.56312 -16.24627 -16.01142 -15.94034 -15.49637 -15.08335 -14.63276 -14.30907 -14.06040 -13.83308 -13.81215 -13.56812 -13.03170 -13.00796 -12.88902 -12.68896 -12.63939 -12.29852 -12.09326 -11.95232 -11.74267 -11.62918 -11.53926 -11.47678 -11.08799 -10.89882 -10.78623 -10.71824 -10.32108 -10.09299 -9.88024 -9.82877 -9.63764 -9.57846 -9.49842 -9.28085 -8.79053 -8.40818 -8.01746 -6.86416 -5.88466 -3.22335 1.12617 1.32422 3.03006 3.17759 3.34238 3.39472 3.39963 3.53114 3.89340 4.14627 4.39599 4.68096 4.94635 4.96815 5.01249 5.03520 5.11549 5.16493 5.21701 5.30611 5.35775 5.46009 5.47827 5.64916 5.68041 5.70343 5.75079 5.78439 5.80915 5.86703 5.94201 6.00130 6.01987 6.13701 6.15531 6.30641 6.40181 6.42456 6.53521 6.62499 6.65003 6.72948 6.88641 6.98428 7.25535 7.28674 7.45229 7.63223 7.97088 8.09054 8.14095 8.76465 9.02770 9.64615 10.41654 11.25071 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018207 B = 0.002893 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.482081 B = 9676.729613 C =10631.131529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.066 3.934 3 O -0.311 6.311 4 C 0.325 3.675 5 C -0.200 4.200 6 C -0.042 4.042 7 C -0.208 4.208 8 C 0.193 3.807 9 C -0.094 4.094 10 C 0.516 3.484 11 O -0.548 6.548 12 N -0.593 5.593 13 C 0.105 3.895 14 C 0.134 3.866 15 H 0.076 0.924 16 C -0.124 4.124 17 C -0.135 4.135 18 C 0.167 3.833 19 H 0.120 0.880 20 C 0.102 3.898 21 N -0.584 5.584 22 C -0.224 4.224 23 H 0.076 0.924 24 C -0.003 4.003 25 N -0.917 5.917 26 Si 0.912 3.088 27 H -0.285 1.285 28 H -0.290 1.290 29 H -0.285 1.285 30 N -0.509 5.509 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.111 0.889 40 H 0.109 0.891 41 H 0.060 0.940 42 H 0.073 0.927 43 H 0.053 0.947 44 H 0.056 0.944 45 H 0.049 0.951 46 H 0.053 0.947 47 H 0.060 0.940 48 H 0.083 0.917 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.550 12.937 -4.238 17.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.009 4.009 3 O -0.219 6.219 4 C 0.146 3.854 5 C -0.221 4.221 6 C -0.068 4.068 7 C -0.229 4.229 8 C 0.056 3.944 9 C -0.134 4.134 10 C 0.303 3.697 11 O -0.427 6.427 12 N -0.325 5.325 13 C -0.019 4.019 14 C 0.025 3.975 15 H 0.094 0.906 16 C -0.163 4.163 17 C -0.174 4.174 18 C 0.060 3.940 19 H 0.138 0.862 20 C -0.021 4.021 21 N -0.305 5.305 22 C -0.352 4.352 23 H 0.094 0.906 24 C -0.200 4.200 25 N -0.563 5.563 26 Si 0.743 3.257 27 H -0.212 1.212 28 H -0.216 1.216 29 H -0.211 1.211 30 N -0.232 5.232 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.155 0.845 37 H 0.157 0.843 38 H 0.154 0.846 39 H 0.129 0.871 40 H 0.127 0.873 41 H 0.078 0.922 42 H 0.091 0.909 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.068 0.932 46 H 0.072 0.928 47 H 0.078 0.922 48 H 0.101 0.899 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -11.332 12.349 -3.855 17.198 hybrid contribution 1.230 -0.038 0.231 1.253 sum -10.101 12.311 -3.624 16.332 Atomic orbital electron populations 1.21811 0.93301 1.02822 1.02914 1.22591 0.94316 0.80948 1.03036 1.86179 1.16994 1.30875 1.87833 1.19742 0.84054 0.89759 0.91849 1.20999 0.95865 0.95644 1.09597 1.21303 0.92300 0.99172 0.94022 1.21769 1.01369 0.92533 1.07194 1.20286 0.88626 0.93626 0.91869 1.20695 0.99395 0.93263 1.00083 1.20028 0.82118 0.81636 0.85966 1.90655 1.31351 1.72977 1.47709 1.48166 1.36262 1.19118 1.28969 1.22303 1.00019 0.91541 0.88084 1.21956 0.88266 0.92603 0.94665 0.90630 1.22729 0.97312 0.99849 0.96395 1.22913 0.98211 0.99466 0.96810 1.21781 0.93544 0.88754 0.89947 0.86240 1.22512 0.89927 0.98114 0.91585 1.45142 1.16208 1.50463 1.18728 1.18978 0.88884 1.10838 1.16467 0.90640 1.24793 0.96539 0.98402 1.00282 1.69797 1.19523 1.32783 1.34211 0.86199 0.80367 0.81326 0.77837 1.21207 1.21603 1.21143 1.67078 1.05846 1.32866 1.17369 0.91941 0.90348 0.91804 0.91772 0.91039 0.84518 0.84280 0.84553 0.87112 0.87305 0.92194 0.90871 0.92814 0.92518 0.93237 0.92838 0.92214 0.89883 0.93495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 10.28 37.15 0.38 -1.02 16 2 C 0.07 0.84 6.03 37.15 0.22 1.06 16 3 O -0.31 -4.37 10.12 -18.71 -0.19 -4.56 16 4 C 0.33 4.78 7.49 -17.12 -0.13 4.65 16 5 C -0.20 -2.38 10.04 -39.28 -0.39 -2.78 16 6 C -0.04 -0.44 10.17 -39.31 -0.40 -0.84 16 7 C -0.21 -2.45 9.70 -39.44 -0.38 -2.83 16 8 C 0.19 2.82 5.75 -82.61 -0.48 2.34 16 9 C -0.09 -1.33 4.48 -29.04 -0.13 -1.46 16 10 C 0.52 9.29 7.64 -10.99 -0.08 9.20 16 11 O -0.55 -11.49 14.81 5.55 0.08 -11.41 16 12 N -0.59 -11.04 2.27 -171.83 -0.39 -11.43 16 13 C 0.11 2.05 5.89 -3.22 -0.02 2.03 16 14 C 0.13 2.66 4.27 -65.67 -0.28 2.38 16 15 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 16 C -0.12 -2.24 6.31 -24.39 -0.15 -2.39 16 17 C -0.13 -2.47 6.22 -24.40 -0.15 -2.63 16 18 C 0.17 3.54 3.11 -65.92 -0.21 3.33 16 19 H 0.12 2.86 6.36 -51.93 -0.33 2.53 16 20 C 0.10 1.95 5.66 -3.47 -0.02 1.93 16 21 N -0.58 -13.57 2.81 -152.89 -0.43 -14.00 16 22 C -0.22 -5.75 10.37 -15.06 -0.16 -5.90 16 23 H 0.08 1.91 7.85 -52.49 -0.41 1.50 16 24 C 0.00 -0.09 5.42 -17.43 -0.09 -0.18 16 25 N -0.92 -24.00 10.42 55.49 0.58 -23.43 16 26 Si 0.91 20.81 29.56 -169.99 -5.03 15.78 16 27 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 28 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 29 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 30 N -0.51 -8.17 8.09 -9.55 -0.08 -8.25 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.82 8.10 -51.92 -0.42 0.40 16 35 H 0.07 1.04 8.11 -51.93 -0.42 0.62 16 36 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 37 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.14 1.25 7.94 -52.49 -0.42 0.83 16 39 H 0.11 1.44 7.58 -51.93 -0.39 1.04 16 40 H 0.11 1.28 7.79 -51.93 -0.40 0.88 16 41 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.07 1.41 7.11 -51.93 -0.37 1.04 16 43 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.06 1.02 7.84 -51.93 -0.41 0.61 16 45 H 0.05 0.84 7.83 -51.92 -0.41 0.43 16 46 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.06 0.96 6.09 -51.93 -0.32 0.64 16 48 H 0.08 1.84 7.82 -51.93 -0.41 1.43 16 49 H 0.25 6.58 8.31 -40.82 -0.34 6.24 16 LS Contribution 390.08 15.07 5.88 5.88 Total: -1.00 -30.37 390.08 -9.69 -40.06 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -7.64 Total: 4.44 kcal Atomic # 6 Polarization: 9.38 SS G_CDS: -2.47 Total: 6.91 kcal Atomic # 7 Polarization: -56.78 SS G_CDS: -0.32 Total: -57.10 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -0.11 Total: -15.97 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.03 Total: 15.78 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.37 -9.69 -40.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029402414.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.302 kcal (2) G-P(sol) polarization free energy of solvation -30.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds