Wall clock time and date at job start Wed Apr 1 2020 05:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42901 * 109.47327 * 2 1 4 4 C 1.35670 * 117.00351 * 180.02562 * 3 2 1 5 5 C 1.38914 * 119.68713 * 180.02562 * 4 3 2 6 6 C 1.38384 * 119.11471 * 180.02562 * 5 4 3 7 7 C 1.38832 * 118.48068 * 359.97438 * 6 5 4 8 8 C 1.38038 * 119.29088 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.58242 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.47603 * 124.99857 * 9 8 7 11 11 O 1.21288 * 119.99521 * 0.02562 * 10 9 8 12 12 N 1.34768 * 120.00657 * 180.02562 * 10 9 8 13 13 C 1.47161 * 120.71323 * 180.02562 * 12 10 9 14 14 C 1.53885 * 108.03162 * 132.76036 * 13 12 10 15 15 H 1.09006 * 112.09989 * 181.91193 * 14 13 12 16 16 C 1.54547 * 107.82847 * 305.86989 * 14 13 12 17 17 C 1.55854 * 104.09598 * 89.27984 * 16 14 13 18 18 C 1.54545 * 105.00190 * 359.97438 * 17 16 14 19 19 H 1.08999 * 112.18406 * 146.41614 * 18 17 16 20 20 C 1.47165 * 120.70804 * 359.72274 * 12 10 9 21 21 N 1.48307 * 104.35339 * 24.71231 * 18 17 16 22 22 C 1.36946 * 128.07484 * 139.07878 * 21 18 17 23 23 H 1.08002 * 119.99438 * 194.96153 * 22 21 18 24 24 C 1.38805 * 119.99905 * 14.96586 * 22 21 18 25 25 N 1.31619 * 120.00280 * 9.26932 * 24 22 21 26 26 Si 1.86801 * 119.99598 * 189.27151 * 24 22 21 27 27 H 1.48498 * 109.47294 * 59.99879 * 26 24 22 28 28 H 1.48500 * 109.46954 * 179.97438 * 26 24 22 29 29 H 1.48499 * 109.47349 * 299.99665 * 26 24 22 30 30 N 1.31961 * 120.83944 * 0.27170 * 8 7 6 31 31 H 1.09002 * 109.47219 * 59.99934 * 1 2 3 32 32 H 1.09005 * 109.47456 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47414 * 300.00096 * 1 2 3 34 34 H 1.09009 * 109.47207 * 240.00159 * 2 1 3 35 35 H 1.09002 * 109.47219 * 120.00066 * 2 1 3 36 36 H 1.08001 * 120.44619 * 359.97438 * 5 4 3 37 37 H 1.07995 * 120.75935 * 179.97438 * 6 5 4 38 38 H 1.08002 * 120.34677 * 179.97438 * 7 6 5 39 39 H 1.08999 * 109.47277 * 244.99899 * 9 8 7 40 40 H 1.09004 * 109.47013 * 4.99751 * 9 8 7 41 41 H 1.09000 * 109.75056 * 252.38877 * 13 12 10 42 42 H 1.09000 * 109.74982 * 13.07385 * 13 12 10 43 43 H 1.08996 * 110.36570 * 207.91633 * 16 14 13 44 44 H 1.08999 * 110.36458 * 330.23085 * 16 14 13 45 45 H 1.09007 * 110.28362 * 241.10027 * 17 16 14 46 46 H 1.09004 * 110.39266 * 118.92846 * 17 16 14 47 47 H 1.09001 * 109.74633 * 346.87902 * 20 12 10 48 48 H 1.09003 * 109.74981 * 107.60244 * 20 12 10 49 49 H 0.96996 * 120.00075 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3513 1.5251 -0.0005 5 6 3.8752 2.8116 0.0000 6 6 5.2489 2.9793 -0.0011 7 6 6.0539 1.8481 -0.0022 8 6 5.4646 0.5999 -0.0026 9 6 6.3321 -0.6324 -0.0031 10 6 5.9552 -1.5128 1.1604 11 8 5.0688 -1.1732 1.9155 12 7 6.6028 -2.6774 1.3619 13 6 6.2470 -3.5493 2.4928 14 6 6.1107 -4.9870 1.9613 15 1 5.8142 -5.6867 2.7427 16 6 5.1065 -4.9641 0.7868 17 6 5.9930 -4.6902 -0.4654 18 6 7.4339 -4.5762 0.0817 19 1 8.1729 -4.9588 -0.6222 20 6 7.6764 -3.1075 0.4520 21 7 7.4097 -5.3517 1.3456 22 6 8.3640 -6.2057 1.8309 23 1 8.1220 -6.8852 2.6347 24 6 9.6422 -6.1978 1.2897 25 7 9.9922 -5.2535 0.4421 26 14 10.8655 -7.5273 1.7642 27 1 10.3235 -8.8568 1.3850 28 1 12.1488 -7.2955 1.0539 29 1 11.0966 -7.4868 3.2306 30 7 4.1512 0.4718 -0.0074 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5138 0.8900 36 1 3.2193 3.6696 0.0004 37 1 5.6847 3.9673 -0.0012 38 1 7.1296 1.9440 -0.0035 39 1 6.1861 -1.1792 -0.9347 40 1 7.3784 -0.3401 0.0864 41 1 7.0304 -3.5091 3.2496 42 1 5.3005 -3.2243 2.9249 43 1 4.6053 -5.9279 0.6974 44 1 4.3760 -4.1675 0.9278 45 1 5.6940 -3.7572 -0.9433 46 1 5.9195 -5.5176 -1.1712 47 1 7.6631 -2.4944 -0.4491 48 1 8.6415 -3.0110 0.9495 49 1 10.8852 -5.2483 0.0637 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029402414.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:56 Heat of formation + Delta-G solvation = -15.174433 kcal Electronic energy + Delta-G solvation = -31412.606936 eV Core-core repulsion = 27340.413622 eV Total energy + Delta-G solvation = -4072.193314 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.84170 -41.26886 -39.49637 -38.75512 -35.33388 -34.33892 -33.95648 -33.12787 -32.41502 -31.78430 -30.99643 -29.24365 -27.50630 -25.56636 -25.36939 -24.81348 -23.67837 -23.01990 -21.40371 -21.14570 -20.18569 -19.24528 -18.64459 -17.63965 -17.61501 -17.25700 -16.96663 -16.85595 -16.67375 -16.23848 -15.67236 -15.38820 -14.99804 -14.89265 -14.81386 -14.68387 -14.42780 -14.11158 -13.92284 -13.56060 -13.46966 -13.40250 -13.23939 -13.17866 -12.90805 -12.88850 -12.76078 -12.64611 -12.55361 -12.43218 -11.97350 -11.80050 -11.68786 -11.48099 -11.42814 -11.14086 -10.91473 -10.77570 -10.56056 -10.44088 -9.65834 -9.38157 -8.67476 -7.83584 -5.17589 0.16908 0.42732 1.51475 1.52530 1.58115 1.76595 2.10853 2.14844 2.52909 2.85016 3.13974 3.35703 3.50283 3.70673 3.84471 4.05868 4.08129 4.09162 4.14857 4.18913 4.21840 4.23105 4.35334 4.38504 4.44477 4.46850 4.50354 4.52894 4.56695 4.73812 4.78958 4.81488 4.86109 4.93164 5.00613 5.04713 5.05880 5.08337 5.16749 5.19137 5.27292 5.35271 5.37947 5.56445 5.57855 5.64917 5.86873 6.26068 6.29832 6.64666 6.99305 7.10955 7.31649 7.74044 8.53913 9.27911 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018207 B = 0.002893 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.482081 B = 9676.729613 C =10631.131529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.069 3.931 3 O -0.319 6.319 4 C 0.293 3.707 5 C -0.199 4.199 6 C -0.035 4.035 7 C -0.203 4.203 8 C 0.162 3.838 9 C -0.087 4.087 10 C 0.515 3.485 11 O -0.579 6.579 12 N -0.594 5.594 13 C 0.112 3.888 14 C 0.130 3.870 15 H 0.078 0.922 16 C -0.112 4.112 17 C -0.125 4.125 18 C 0.163 3.837 19 H 0.091 0.909 20 C 0.117 3.883 21 N -0.604 5.604 22 C -0.238 4.238 23 H 0.072 0.928 24 C -0.047 4.047 25 N -0.930 5.930 26 Si 0.968 3.032 27 H -0.284 1.284 28 H -0.293 1.293 29 H -0.285 1.285 30 N -0.539 5.539 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.043 0.957 36 H 0.159 0.841 37 H 0.181 0.819 38 H 0.165 0.835 39 H 0.123 0.877 40 H 0.135 0.865 41 H 0.040 0.960 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.060 0.940 45 H 0.067 0.933 46 H 0.056 0.944 47 H 0.094 0.906 48 H 0.050 0.950 49 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.838 14.661 -5.185 18.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.007 4.007 3 O -0.228 6.228 4 C 0.114 3.886 5 C -0.220 4.220 6 C -0.060 4.060 7 C -0.223 4.223 8 C 0.025 3.975 9 C -0.127 4.127 10 C 0.304 3.696 11 O -0.459 6.459 12 N -0.326 5.326 13 C -0.013 4.013 14 C 0.022 3.978 15 H 0.096 0.904 16 C -0.151 4.151 17 C -0.164 4.164 18 C 0.056 3.944 19 H 0.109 0.891 20 C -0.007 4.007 21 N -0.325 5.325 22 C -0.366 4.366 23 H 0.089 0.911 24 C -0.242 4.242 25 N -0.577 5.577 26 Si 0.798 3.202 27 H -0.211 1.211 28 H -0.219 1.219 29 H -0.211 1.211 30 N -0.263 5.263 31 H 0.091 0.909 32 H 0.112 0.888 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.177 0.823 37 H 0.199 0.801 38 H 0.183 0.817 39 H 0.141 0.859 40 H 0.153 0.847 41 H 0.058 0.942 42 H 0.093 0.907 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.085 0.915 46 H 0.075 0.925 47 H 0.112 0.888 48 H 0.068 0.932 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -11.634 14.081 -4.808 18.888 hybrid contribution 1.303 -0.520 0.567 1.513 sum -10.332 13.561 -4.242 17.568 Atomic orbital electron populations 1.21802 0.90655 1.04034 1.03524 1.22593 0.96331 0.80496 1.01245 1.86170 1.17203 1.31246 1.88133 1.20189 0.84155 0.90767 0.93479 1.21399 0.97121 0.95185 1.08264 1.21815 0.91499 1.00697 0.92038 1.22143 1.03030 0.91780 1.05371 1.20501 0.88391 0.94771 0.93817 1.20731 1.00815 0.92757 0.98409 1.20703 0.81113 0.81247 0.86515 1.90644 1.32644 1.73486 1.49159 1.48165 1.36319 1.19490 1.28598 1.22093 0.99283 0.91738 0.88195 1.22086 0.87517 0.92721 0.95459 0.90427 1.22621 0.96687 1.00553 0.95271 1.22815 0.96236 1.00551 0.96835 1.21744 0.94394 0.89433 0.88876 0.89086 1.22238 0.88409 0.97621 0.92414 1.45314 1.16751 1.50638 1.19848 1.19199 0.89743 1.11287 1.16420 0.91065 1.25405 0.97857 1.00145 1.00803 1.69940 1.19341 1.33657 1.34805 0.85324 0.78324 0.79283 0.77287 1.21073 1.21942 1.21102 1.66964 1.06863 1.34158 1.18319 0.90854 0.88838 0.91575 0.92520 0.93838 0.82332 0.80127 0.81708 0.85898 0.84676 0.94203 0.90728 0.91776 0.92180 0.91458 0.92518 0.88768 0.93153 0.94044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 10.28 71.98 0.74 -1.79 16 2 C 0.07 1.77 6.03 71.98 0.43 2.20 16 3 O -0.32 -8.97 10.12 -89.87 -0.91 -9.87 16 4 C 0.29 8.45 7.49 84.79 0.63 9.09 16 5 C -0.20 -4.30 10.04 22.47 0.23 -4.07 16 6 C -0.04 -0.61 10.17 22.45 0.23 -0.38 16 7 C -0.20 -4.14 9.70 22.36 0.22 -3.93 16 8 C 0.16 4.45 5.75 42.49 0.24 4.70 16 9 C -0.09 -2.29 4.48 29.10 0.13 -2.16 16 10 C 0.52 18.15 7.64 87.66 0.67 18.82 16 11 O -0.58 -24.31 14.81 -3.06 -0.05 -24.36 16 12 N -0.59 -21.88 2.27 -815.95 -1.85 -23.73 16 13 C 0.11 4.42 5.89 86.55 0.51 4.93 16 14 C 0.13 5.19 4.27 45.47 0.19 5.39 16 15 H 0.08 3.02 8.14 -2.38 -0.02 3.00 16 16 C -0.11 -3.95 6.31 32.11 0.20 -3.75 16 17 C -0.13 -4.45 6.22 32.11 0.20 -4.25 16 18 C 0.16 6.86 3.11 45.30 0.14 7.00 16 19 H 0.09 4.40 6.36 -2.39 -0.02 4.39 16 20 C 0.12 4.40 5.66 86.38 0.49 4.89 16 21 N -0.60 -28.33 2.81 -637.62 -1.79 -30.13 16 22 C -0.24 -12.40 10.37 84.03 0.87 -11.53 16 23 H 0.07 3.67 7.85 -2.91 -0.02 3.64 16 24 C -0.05 -2.46 5.42 84.86 0.46 -2.00 16 25 N -0.93 -49.41 10.42 21.65 0.23 -49.18 16 26 Si 0.97 43.20 29.56 68.60 2.03 45.23 16 27 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 28 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 29 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 30 N -0.54 -17.11 8.09 -297.00 -2.40 -19.51 16 31 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 33 H 0.07 1.13 8.14 -2.39 -0.02 1.12 16 34 H 0.06 1.49 8.10 -2.38 -0.02 1.47 16 35 H 0.04 1.33 8.11 -2.39 -0.02 1.31 16 36 H 0.16 2.59 8.06 -2.91 -0.02 2.56 16 37 H 0.18 1.56 8.06 -2.91 -0.02 1.54 16 38 H 0.17 2.31 7.94 -2.91 -0.02 2.29 16 39 H 0.12 2.90 7.58 -2.39 -0.02 2.88 16 40 H 0.14 2.79 7.79 -2.38 -0.02 2.77 16 41 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.07 2.91 7.11 -2.39 -0.02 2.90 16 43 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.06 2.09 7.84 -2.39 -0.02 2.07 16 45 H 0.07 2.14 7.83 -2.38 -0.02 2.12 16 46 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.09 2.85 6.09 -2.39 -0.01 2.83 16 48 H 0.05 2.25 7.82 -2.39 -0.02 2.23 16 49 H 0.25 13.07 8.31 -92.71 -0.77 12.30 16 Total: -1.00 -67.69 390.08 2.79 -64.90 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: 0.94 Total: 23.50 kcal Atomic # 6 Polarization: 16.56 SS G_CDS: 6.59 Total: 23.15 kcal Atomic # 7 Polarization: -116.73 SS G_CDS: -5.82 Total: -122.55 kcal Atomic # 8 Polarization: -33.28 SS G_CDS: -0.95 Total: -34.23 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -67.69 2.79 -64.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029402414.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.724 kcal (2) G-P(sol) polarization free energy of solvation -67.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds