Wall clock time and date at job start Wed Apr 1 2020 05:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42901 * 109.46971 * 2 1 4 4 C 1.35432 * 117.00104 * 180.02562 * 3 2 1 5 5 N 1.32231 * 119.79488 * 359.97438 * 4 3 2 6 6 C 1.31888 * 121.79632 * 179.97438 * 5 4 3 7 7 C 1.38351 * 121.18557 * 359.97438 * 6 5 4 8 8 C 1.38336 * 119.45879 * 359.78013 * 7 6 5 9 9 C 1.50698 * 120.82673 * 180.23546 * 8 7 6 10 10 C 1.39984 * 118.34785 * 0.48292 * 8 7 6 11 11 C 1.47529 * 120.59923 * 179.75205 * 10 8 7 12 12 O 1.21586 * 120.00126 * 264.32798 * 11 10 8 13 13 N 1.34778 * 119.99581 * 84.32102 * 11 10 8 14 14 C 1.47156 * 120.71137 * 5.10872 * 13 11 10 15 15 C 1.53893 * 108.03236 * 132.73645 * 14 13 11 16 16 H 1.08999 * 112.09573 * 181.91227 * 15 14 13 17 17 C 1.54552 * 108.36466 * 306.24975 * 15 14 13 18 18 C 1.54825 * 104.74234 * 89.17256 * 17 15 14 19 19 C 1.54550 * 104.74391 * 0.02562 * 18 17 15 20 20 H 1.09007 * 112.67801 * 146.81241 * 19 18 17 21 21 C 1.47162 * 120.70624 * 185.08492 * 13 11 10 22 22 N 1.48302 * 104.35576 * 24.82613 * 19 18 17 23 23 C 1.36938 * 128.07554 * 139.08624 * 22 19 18 24 24 H 1.08008 * 119.99779 * 344.99512 * 23 22 19 25 25 C 1.38811 * 120.00350 * 165.00642 * 23 22 19 26 26 N 1.31625 * 119.99636 * 351.39397 * 25 23 22 27 27 Si 1.86791 * 120.00539 * 171.39989 * 25 23 22 28 28 H 1.48500 * 109.47019 * 269.99731 * 27 25 23 29 29 H 1.48502 * 109.47083 * 29.99434 * 27 25 23 30 30 H 1.48500 * 109.47347 * 149.99533 * 27 25 23 31 31 H 1.08995 * 109.46919 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46702 * 299.99559 * 1 2 3 33 33 H 1.08995 * 109.47497 * 59.99758 * 1 2 3 34 34 H 1.08998 * 109.46702 * 240.00441 * 2 1 3 35 35 H 1.08995 * 109.47497 * 120.00242 * 2 1 3 36 36 H 1.08001 * 119.40427 * 179.97438 * 6 5 4 37 37 H 1.08001 * 120.26938 * 180.02562 * 7 6 5 38 38 H 1.08996 * 109.47333 * 274.27959 * 9 8 7 39 39 H 1.09001 * 109.46837 * 34.27690 * 9 8 7 40 40 H 1.09000 * 109.47159 * 154.27468 * 9 8 7 41 41 H 1.08997 * 109.74955 * 13.10595 * 14 13 11 42 42 H 1.08997 * 109.79202 * 252.39139 * 14 13 11 43 43 H 1.09002 * 110.35899 * 208.14001 * 17 15 14 44 44 H 1.08991 * 110.36605 * 330.45251 * 17 15 14 45 45 H 1.08996 * 110.30820 * 241.24410 * 18 17 15 46 46 H 1.08998 * 110.61709 * 118.90871 * 18 17 15 47 47 H 1.09005 * 109.75431 * 346.89969 * 21 13 11 48 48 H 1.09004 * 109.75125 * 107.63058 * 21 13 11 49 49 H 0.96997 * 119.99764 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3490 1.5248 -0.0005 5 7 4.1508 0.4733 -0.0005 6 6 5.4635 0.6004 -0.0015 7 6 6.0625 1.8475 -0.0032 8 6 5.2713 2.9823 -0.0084 9 6 5.8912 4.3558 -0.0157 10 6 3.8806 2.8229 -0.0015 11 6 2.9900 3.9991 -0.0011 12 8 2.5448 4.4242 1.0474 13 7 2.6699 4.6022 -1.1631 14 6 3.1077 4.0365 -2.4491 15 6 1.8963 4.0170 -3.3980 16 1 2.1400 3.5769 -4.3650 17 6 0.7382 3.2740 -2.6941 18 6 -0.0211 4.3758 -1.9154 19 6 0.7507 5.6787 -2.2242 20 1 0.1007 6.5529 -2.2638 21 6 1.8747 5.8405 -1.1729 22 7 1.4138 5.4140 -3.5240 23 6 1.5537 6.2632 -4.5891 24 1 0.9581 7.1624 -4.6447 25 6 2.4609 5.9682 -5.5975 26 7 3.3046 4.9685 -5.4520 27 14 2.4845 6.9900 -7.1610 28 1 1.5607 6.3912 -8.1577 29 1 2.0495 8.3761 -6.8531 30 1 3.8619 7.0151 -7.7153 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 6.0820 -0.2850 -0.0011 37 1 7.1390 1.9344 -0.0044 38 1 6.1111 4.6606 1.0074 39 1 6.8143 4.3348 -0.5949 40 1 5.1965 5.0656 -0.4649 41 1 3.4743 3.0210 -2.2990 42 1 3.8985 4.6545 -2.8741 43 1 0.0843 2.8068 -3.4305 44 1 1.1306 2.5260 -2.0053 45 1 0.0002 4.1663 -0.8460 46 1 -1.0505 4.4532 -2.2655 47 1 1.4356 6.0041 -0.1888 48 1 2.5111 6.6848 -1.4380 49 1 3.9387 4.7626 -6.1565 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029407960.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:05 Heat of formation + Delta-G solvation = 0.663120 kcal Electronic energy + Delta-G solvation = -33019.222852 eV Core-core repulsion = 28947.716306 eV Total energy + Delta-G solvation = -4071.506546 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.97128 -39.54367 -38.15645 -37.52455 -33.98426 -33.49358 -32.44097 -32.02805 -30.65043 -29.87297 -29.19803 -28.07197 -26.24370 -24.42640 -23.71267 -23.56954 -23.20447 -21.59868 -20.02640 -19.60203 -18.63402 -18.00780 -17.45862 -17.03834 -16.32059 -15.91980 -15.62376 -15.19945 -14.85583 -14.64102 -14.14427 -14.08666 -13.72126 -13.45345 -13.19305 -13.15083 -12.94091 -12.86267 -12.70341 -12.56974 -12.49788 -12.18040 -11.91493 -11.72155 -11.66523 -11.57434 -11.44915 -11.07060 -10.89502 -10.77347 -10.72789 -10.32041 -10.07475 -9.96045 -9.77574 -9.63567 -9.53890 -9.47184 -9.24487 -8.78350 -8.41052 -8.03898 -6.84092 -5.85440 -3.20115 0.99880 1.26947 2.96844 3.06240 3.34508 3.40764 3.41555 3.53019 3.78105 4.28258 4.41150 4.67493 4.88739 4.92772 5.01806 5.07663 5.11631 5.23080 5.33107 5.36002 5.43106 5.51228 5.58836 5.66606 5.73210 5.76769 5.83457 5.84160 5.85497 5.97655 5.99542 6.06555 6.08300 6.14670 6.24931 6.35763 6.42412 6.45019 6.61286 6.67728 6.68923 6.79164 6.96014 6.98883 7.27957 7.29819 7.48250 7.65895 7.80328 8.07084 8.14000 8.67332 9.04949 9.66913 10.44321 11.27480 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011936 B = 0.004444 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2345.243317 B = 6298.632078 C = 6990.867319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.068 3.932 3 O -0.293 6.293 4 C 0.357 3.643 5 N -0.545 5.545 6 C 0.150 3.850 7 C -0.215 4.215 8 C 0.024 3.976 9 C -0.123 4.123 10 C -0.183 4.183 11 C 0.571 3.429 12 O -0.554 6.554 13 N -0.580 5.580 14 C 0.112 3.888 15 C 0.168 3.832 16 H 0.119 0.881 17 C -0.136 4.136 18 C -0.121 4.121 19 C 0.134 3.866 20 H 0.078 0.922 21 C 0.101 3.899 22 N -0.585 5.585 23 C -0.222 4.222 24 H 0.077 0.923 25 C -0.004 4.004 26 N -0.916 5.916 27 Si 0.912 3.088 28 H -0.289 1.289 29 H -0.281 1.281 30 H -0.291 1.291 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.161 0.839 37 H 0.140 0.860 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.052 0.948 42 H 0.081 0.919 43 H 0.051 0.949 44 H 0.057 0.943 45 H 0.056 0.944 46 H 0.053 0.947 47 H 0.075 0.925 48 H 0.063 0.937 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.701 -9.003 9.874 13.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.008 4.008 3 O -0.199 6.199 4 C 0.178 3.822 5 N -0.269 5.269 6 C -0.006 4.006 7 C -0.236 4.236 8 C 0.016 3.984 9 C -0.179 4.179 10 C -0.189 4.189 11 C 0.357 3.643 12 O -0.433 6.433 13 N -0.311 5.311 14 C -0.011 4.011 15 C 0.060 3.940 16 H 0.136 0.864 17 C -0.175 4.175 18 C -0.160 4.160 19 C 0.026 3.974 20 H 0.096 0.904 21 C -0.024 4.024 22 N -0.306 5.306 23 C -0.350 4.350 24 H 0.095 0.905 25 C -0.201 4.201 26 N -0.563 5.563 27 Si 0.743 3.257 28 H -0.216 1.216 29 H -0.207 1.207 30 H -0.218 1.218 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.178 0.822 37 H 0.158 0.842 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.070 0.930 42 H 0.100 0.900 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.071 0.929 47 H 0.093 0.907 48 H 0.082 0.918 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.960 -9.326 10.132 13.909 hybrid contribution 0.679 0.923 -0.892 1.452 sum 2.639 -8.403 9.240 12.765 Atomic orbital electron populations 1.21820 0.92941 1.02617 1.03730 1.22618 0.94938 0.80918 1.02283 1.86290 1.16262 1.30642 1.86690 1.19616 0.84315 0.88346 0.89961 1.67361 1.06571 1.32322 1.20672 1.22460 0.89139 0.97268 0.91736 1.21747 1.01237 0.92465 1.08127 1.20155 0.90568 0.96969 0.90677 1.20916 1.01621 0.92178 1.03179 1.19773 0.94179 0.92703 1.12234 1.17713 0.80289 0.82316 0.83948 1.90721 1.55024 1.65989 1.31610 1.48165 1.51412 1.25465 1.06064 1.22509 1.00010 0.96564 0.82047 1.21862 0.89180 0.85674 0.97254 0.86389 1.22730 0.98880 0.97413 0.98464 1.22511 0.98296 0.96220 0.98957 1.22144 0.92452 0.96164 0.86644 0.90429 1.22564 0.94331 0.85295 1.00172 1.45197 1.64614 1.09883 1.10860 1.19033 1.16480 1.02839 0.96628 0.90546 1.24803 0.96725 0.99035 0.99525 1.69820 1.22057 1.31109 1.33313 0.86121 0.76804 0.79514 0.83305 1.21648 1.20692 1.21774 0.90454 0.91679 0.91242 0.91487 0.91806 0.82199 0.84172 0.89968 0.90098 0.90463 0.93000 0.90035 0.93047 0.92438 0.92527 0.92852 0.90674 0.91821 0.93597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 10.28 37.16 0.38 -1.28 16 2 C 0.07 0.87 6.03 37.16 0.22 1.09 16 3 O -0.29 -4.91 8.60 -17.99 -0.15 -5.07 16 4 C 0.36 6.02 7.35 -16.61 -0.12 5.90 16 5 N -0.54 -8.01 9.21 -12.98 -0.12 -8.13 16 6 C 0.15 1.78 11.17 -17.49 -0.20 1.58 16 7 C -0.22 -2.53 9.81 -39.50 -0.39 -2.92 16 8 C 0.02 0.35 5.95 -103.93 -0.62 -0.27 16 9 C -0.12 -1.59 9.75 36.00 0.35 -1.24 16 10 C -0.18 -3.20 3.75 -104.69 -0.39 -3.59 16 11 C 0.57 11.28 5.27 -12.47 -0.07 11.21 16 12 O -0.55 -12.32 16.57 5.29 0.09 -12.23 16 13 N -0.58 -11.48 2.16 -172.22 -0.37 -11.86 16 14 C 0.11 2.34 5.69 -3.22 -0.02 2.32 16 15 C 0.17 3.75 3.10 -65.64 -0.20 3.55 16 16 H 0.12 2.99 6.31 -51.93 -0.33 2.66 16 17 C -0.14 -2.67 6.23 -24.95 -0.16 -2.82 16 18 C -0.12 -2.28 6.24 -24.96 -0.16 -2.43 16 19 C 0.13 2.73 4.32 -65.20 -0.28 2.45 16 20 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 21 C 0.10 1.99 5.99 -2.76 -0.02 1.98 16 22 N -0.58 -13.80 2.80 -152.07 -0.43 -14.23 16 23 C -0.22 -5.74 10.37 -15.06 -0.16 -5.89 16 24 H 0.08 1.94 7.84 -52.48 -0.41 1.53 16 25 C 0.00 -0.11 5.43 -17.43 -0.09 -0.20 16 26 N -0.92 -24.48 10.36 55.49 0.57 -23.91 16 27 Si 0.91 20.99 29.56 -169.99 -5.03 15.96 16 28 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 29 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 30 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 35 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 36 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16 37 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 38 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.08 0.87 8.13 -51.93 -0.42 0.44 16 40 H 0.08 1.19 6.94 -51.93 -0.36 0.83 16 41 H 0.05 1.05 6.41 -51.93 -0.33 0.71 16 42 H 0.08 1.91 7.82 -51.93 -0.41 1.51 16 43 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.06 1.11 6.86 -51.93 -0.36 0.75 16 45 H 0.06 1.07 7.87 -51.93 -0.41 0.66 16 46 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 47 H 0.07 1.45 7.08 -51.93 -0.37 1.08 16 48 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 49 H 0.25 6.68 8.31 -40.82 -0.34 6.34 16 LS Contribution 388.32 15.07 5.85 5.85 Total: -1.00 -30.45 388.32 -9.09 -39.53 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -7.60 Total: 4.64 kcal Atomic # 6 Polarization: 11.35 SS G_CDS: -1.91 Total: 9.44 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: -0.34 Total: -58.13 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: -0.07 Total: -17.30 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.45 -9.09 -39.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029407960.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.197 kcal (2) G-P(sol) polarization free energy of solvation -30.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds