Wall clock time and date at job start Wed Apr 1 2020 05:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42901 * 109.46971 * 2 1 4 4 C 1.35432 * 117.00104 * 180.02562 * 3 2 1 5 5 N 1.32231 * 119.79488 * 359.97438 * 4 3 2 6 6 C 1.31888 * 121.79632 * 179.97438 * 5 4 3 7 7 C 1.38351 * 121.18557 * 359.97438 * 6 5 4 8 8 C 1.38336 * 119.45879 * 359.78013 * 7 6 5 9 9 C 1.50698 * 120.82673 * 180.23546 * 8 7 6 10 10 C 1.39984 * 118.34785 * 0.48292 * 8 7 6 11 11 C 1.47529 * 120.59923 * 179.75205 * 10 8 7 12 12 O 1.21586 * 120.00126 * 264.32798 * 11 10 8 13 13 N 1.34778 * 119.99581 * 84.32102 * 11 10 8 14 14 C 1.47156 * 120.71137 * 5.10872 * 13 11 10 15 15 C 1.53893 * 108.03236 * 132.73645 * 14 13 11 16 16 H 1.08999 * 112.09573 * 181.91227 * 15 14 13 17 17 C 1.54552 * 108.36466 * 306.24975 * 15 14 13 18 18 C 1.54825 * 104.74234 * 89.17256 * 17 15 14 19 19 C 1.54550 * 104.74391 * 0.02562 * 18 17 15 20 20 H 1.09007 * 112.67801 * 146.81241 * 19 18 17 21 21 C 1.47162 * 120.70624 * 185.08492 * 13 11 10 22 22 N 1.48302 * 104.35576 * 24.82613 * 19 18 17 23 23 C 1.36938 * 128.07554 * 139.08624 * 22 19 18 24 24 H 1.08008 * 119.99779 * 344.99512 * 23 22 19 25 25 C 1.38811 * 120.00350 * 165.00642 * 23 22 19 26 26 N 1.31625 * 119.99636 * 351.39397 * 25 23 22 27 27 Si 1.86791 * 120.00539 * 171.39989 * 25 23 22 28 28 H 1.48500 * 109.47019 * 269.99731 * 27 25 23 29 29 H 1.48502 * 109.47083 * 29.99434 * 27 25 23 30 30 H 1.48500 * 109.47347 * 149.99533 * 27 25 23 31 31 H 1.08995 * 109.46919 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46702 * 299.99559 * 1 2 3 33 33 H 1.08995 * 109.47497 * 59.99758 * 1 2 3 34 34 H 1.08998 * 109.46702 * 240.00441 * 2 1 3 35 35 H 1.08995 * 109.47497 * 120.00242 * 2 1 3 36 36 H 1.08001 * 119.40427 * 179.97438 * 6 5 4 37 37 H 1.08001 * 120.26938 * 180.02562 * 7 6 5 38 38 H 1.08996 * 109.47333 * 274.27959 * 9 8 7 39 39 H 1.09001 * 109.46837 * 34.27690 * 9 8 7 40 40 H 1.09000 * 109.47159 * 154.27468 * 9 8 7 41 41 H 1.08997 * 109.74955 * 13.10595 * 14 13 11 42 42 H 1.08997 * 109.79202 * 252.39139 * 14 13 11 43 43 H 1.09002 * 110.35899 * 208.14001 * 17 15 14 44 44 H 1.08991 * 110.36605 * 330.45251 * 17 15 14 45 45 H 1.08996 * 110.30820 * 241.24410 * 18 17 15 46 46 H 1.08998 * 110.61709 * 118.90871 * 18 17 15 47 47 H 1.09005 * 109.75431 * 346.89969 * 21 13 11 48 48 H 1.09004 * 109.75125 * 107.63058 * 21 13 11 49 49 H 0.96997 * 119.99764 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3490 1.5248 -0.0005 5 7 4.1508 0.4733 -0.0005 6 6 5.4635 0.6004 -0.0015 7 6 6.0625 1.8475 -0.0032 8 6 5.2713 2.9823 -0.0084 9 6 5.8912 4.3558 -0.0157 10 6 3.8806 2.8229 -0.0015 11 6 2.9900 3.9991 -0.0011 12 8 2.5448 4.4242 1.0474 13 7 2.6699 4.6022 -1.1631 14 6 3.1077 4.0365 -2.4491 15 6 1.8963 4.0170 -3.3980 16 1 2.1400 3.5769 -4.3650 17 6 0.7382 3.2740 -2.6941 18 6 -0.0211 4.3758 -1.9154 19 6 0.7507 5.6787 -2.2242 20 1 0.1007 6.5529 -2.2638 21 6 1.8747 5.8405 -1.1729 22 7 1.4138 5.4140 -3.5240 23 6 1.5537 6.2632 -4.5891 24 1 0.9581 7.1624 -4.6447 25 6 2.4609 5.9682 -5.5975 26 7 3.3046 4.9685 -5.4520 27 14 2.4845 6.9900 -7.1610 28 1 1.5607 6.3912 -8.1577 29 1 2.0495 8.3761 -6.8531 30 1 3.8619 7.0151 -7.7153 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 6.0820 -0.2850 -0.0011 37 1 7.1390 1.9344 -0.0044 38 1 6.1111 4.6606 1.0074 39 1 6.8143 4.3348 -0.5949 40 1 5.1965 5.0656 -0.4649 41 1 3.4743 3.0210 -2.2990 42 1 3.8985 4.6545 -2.8741 43 1 0.0843 2.8068 -3.4305 44 1 1.1306 2.5260 -2.0053 45 1 0.0002 4.1663 -0.8460 46 1 -1.0505 4.4532 -2.2655 47 1 1.4356 6.0041 -0.1888 48 1 2.5111 6.6848 -1.4380 49 1 3.9387 4.7626 -6.1565 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029407960.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:03 Heat of formation + Delta-G solvation = -17.179474 kcal Electronic energy + Delta-G solvation = -33019.996565 eV Core-core repulsion = 28947.716306 eV Total energy + Delta-G solvation = -4072.280259 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.22857 -41.03164 -39.40957 -38.99058 -35.47276 -34.89237 -34.16744 -33.10005 -32.24502 -31.07585 -30.98011 -29.14282 -27.87938 -25.98216 -25.44345 -24.69079 -24.49480 -22.69047 -21.54756 -21.26539 -20.35414 -19.12744 -18.98544 -18.19937 -17.77813 -17.35308 -17.13897 -16.69958 -16.50403 -15.92754 -15.59907 -15.29639 -15.08992 -14.77243 -14.72393 -14.68259 -14.39338 -14.15694 -14.03183 -13.65220 -13.55381 -13.40812 -13.33581 -13.29246 -13.15411 -12.91881 -12.86443 -12.72722 -12.57422 -12.45553 -11.99391 -11.85676 -11.72660 -11.52063 -11.44293 -11.32401 -11.17519 -10.74959 -10.62907 -10.47346 -9.76655 -9.51460 -8.71611 -7.83614 -5.19371 -0.09515 0.20220 1.48908 1.51415 1.52426 1.59129 1.95391 2.05958 2.51943 2.66302 3.22057 3.35373 3.47047 3.58242 3.68721 3.87065 4.07601 4.07811 4.08613 4.11273 4.16165 4.20640 4.30667 4.38290 4.38722 4.43839 4.54008 4.54975 4.62391 4.69665 4.77456 4.80136 4.84448 4.93367 4.96610 5.00121 5.02086 5.05207 5.11789 5.19832 5.22634 5.30248 5.34254 5.47056 5.53042 5.59438 5.79525 6.20766 6.22402 6.47278 6.75354 7.07831 7.10761 7.72358 8.52082 9.27708 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011936 B = 0.004444 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2345.243317 B = 6298.632078 C = 6990.867319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.064 3.936 3 O -0.318 6.318 4 C 0.341 3.659 5 N -0.552 5.552 6 C 0.155 3.845 7 C -0.203 4.203 8 C 0.013 3.987 9 C -0.120 4.120 10 C -0.221 4.221 11 C 0.579 3.421 12 O -0.584 6.584 13 N -0.580 5.580 14 C 0.138 3.862 15 C 0.166 3.834 16 H 0.087 0.913 17 C -0.125 4.125 18 C -0.109 4.109 19 C 0.132 3.868 20 H 0.089 0.911 21 C 0.105 3.895 22 N -0.600 5.600 23 C -0.233 4.233 24 H 0.078 0.922 25 C -0.050 4.050 26 N -0.935 5.935 27 Si 0.971 3.029 28 H -0.291 1.291 29 H -0.274 1.274 30 H -0.297 1.297 31 H 0.106 0.894 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.206 0.794 37 H 0.182 0.818 38 H 0.095 0.905 39 H 0.106 0.894 40 H 0.044 0.956 41 H 0.057 0.943 42 H 0.051 0.949 43 H 0.055 0.945 44 H 0.060 0.940 45 H 0.057 0.943 46 H 0.069 0.931 47 H 0.081 0.919 48 H 0.052 0.948 49 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.560 -10.332 10.387 15.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.011 4.011 3 O -0.225 6.225 4 C 0.163 3.837 5 N -0.277 5.277 6 C -0.001 4.001 7 C -0.223 4.223 8 C 0.005 3.995 9 C -0.176 4.176 10 C -0.227 4.227 11 C 0.367 3.633 12 O -0.466 6.466 13 N -0.310 5.310 14 C 0.014 3.986 15 C 0.058 3.942 16 H 0.105 0.895 17 C -0.164 4.164 18 C -0.148 4.148 19 C 0.024 3.976 20 H 0.107 0.893 21 C -0.020 4.020 22 N -0.322 5.322 23 C -0.362 4.362 24 H 0.095 0.905 25 C -0.244 4.244 26 N -0.582 5.582 27 Si 0.800 3.200 28 H -0.218 1.218 29 H -0.200 1.200 30 H -0.223 1.223 31 H 0.125 0.875 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.223 0.777 37 H 0.199 0.801 38 H 0.113 0.887 39 H 0.125 0.875 40 H 0.063 0.937 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.075 0.925 46 H 0.087 0.913 47 H 0.099 0.901 48 H 0.070 0.930 49 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 2.801 -10.657 10.662 15.333 hybrid contribution 0.487 1.280 -1.002 1.697 sum 3.288 -9.378 9.660 13.859 Atomic orbital electron populations 1.21839 0.91526 1.04287 1.02881 1.22830 0.96029 0.79622 1.02571 1.86254 1.16696 1.32700 1.86842 1.19730 0.84688 0.88598 0.90734 1.67469 1.07786 1.31398 1.21010 1.23320 0.88504 0.99090 0.89147 1.22188 1.02988 0.91215 1.05876 1.20490 0.89816 0.98634 0.90518 1.20937 1.01733 0.90828 1.04115 1.19765 0.95118 0.91943 1.15886 1.18057 0.79743 0.82515 0.83022 1.90682 1.56322 1.67166 1.32441 1.48113 1.51499 1.25427 1.05932 1.22045 0.98418 0.96107 0.82052 1.21761 0.90588 0.85486 0.96362 0.89515 1.22600 0.97957 0.97414 0.98393 1.22405 0.98724 0.94870 0.98800 1.22309 0.92594 0.97397 0.85285 0.89323 1.22463 0.94081 0.85177 1.00249 1.45342 1.65019 1.10210 1.11627 1.19294 1.16297 1.03143 0.97443 0.90459 1.25456 0.96814 1.00246 1.01922 1.69985 1.22443 1.32196 1.33596 0.85200 0.76127 0.78533 0.80099 1.21820 1.19951 1.22346 0.87514 0.92172 0.92323 0.91401 0.91171 0.77735 0.80095 0.88687 0.87515 0.93684 0.92447 0.93094 0.92581 0.92096 0.92472 0.91261 0.90090 0.92989 0.94210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 10.28 71.98 0.74 -2.30 16 2 C 0.06 1.60 6.03 71.98 0.43 2.04 16 3 O -0.32 -10.69 8.60 -87.28 -0.75 -11.44 16 4 C 0.34 11.36 7.35 85.13 0.63 11.99 16 5 N -0.55 -15.21 9.21 -308.00 -2.84 -18.05 16 6 C 0.16 3.14 11.17 84.71 0.95 4.08 16 7 C -0.20 -4.08 9.81 22.32 0.22 -3.86 16 8 C 0.01 0.37 5.95 -19.42 -0.12 0.26 16 9 C -0.12 -3.01 9.75 71.24 0.69 -2.32 16 10 C -0.22 -7.72 3.75 -19.91 -0.07 -7.79 16 11 C 0.58 23.31 5.27 86.69 0.46 23.76 16 12 O -0.58 -26.57 16.57 -3.99 -0.07 -26.64 16 13 N -0.58 -23.53 2.16 -817.05 -1.76 -25.29 16 14 C 0.14 5.93 5.69 86.56 0.49 6.42 16 15 C 0.17 7.56 3.10 45.47 0.14 7.71 16 16 H 0.09 4.55 6.31 -2.39 -0.02 4.53 16 17 C -0.12 -4.90 6.23 31.75 0.20 -4.70 16 18 C -0.11 -4.05 6.24 31.74 0.20 -3.85 16 19 C 0.13 5.36 4.32 45.77 0.20 5.55 16 20 H 0.09 3.38 8.14 -2.38 -0.02 3.36 16 21 C 0.10 4.23 5.99 86.85 0.52 4.75 16 22 N -0.60 -28.78 2.80 -635.02 -1.78 -30.56 16 23 C -0.23 -12.20 10.37 84.03 0.87 -11.32 16 24 H 0.08 3.94 7.84 -2.91 -0.02 3.91 16 25 C -0.05 -2.64 5.43 84.86 0.46 -2.18 16 26 N -0.93 -51.14 10.36 21.65 0.22 -50.92 16 27 Si 0.97 43.56 29.56 68.60 2.03 45.59 16 28 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 29 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 30 H -0.30 -13.48 7.11 99.48 0.71 -12.77 16 31 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.07 1.65 8.10 -2.39 -0.02 1.63 16 35 H 0.07 1.63 8.10 -2.39 -0.02 1.61 16 36 H 0.21 2.20 8.06 -2.91 -0.02 2.18 16 37 H 0.18 2.12 8.06 -2.91 -0.02 2.10 16 38 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.11 2.06 8.13 -2.39 -0.02 2.04 16 40 H 0.04 1.42 6.94 -2.39 -0.02 1.40 16 41 H 0.06 2.38 6.41 -2.39 -0.02 2.37 16 42 H 0.05 2.49 7.82 -2.39 -0.02 2.48 16 43 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 44 H 0.06 2.36 6.86 -2.39 -0.02 2.34 16 45 H 0.06 2.13 7.87 -2.39 -0.02 2.11 16 46 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 47 H 0.08 3.17 7.08 -2.38 -0.02 3.16 16 48 H 0.05 2.19 8.14 -2.39 -0.02 2.18 16 49 H 0.25 13.37 8.31 -92.71 -0.77 12.60 16 Total: -1.00 -67.78 388.32 3.02 -64.77 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: 0.95 Total: 24.30 kcal Atomic # 6 Polarization: 21.22 SS G_CDS: 7.01 Total: 28.23 kcal Atomic # 7 Polarization: -118.66 SS G_CDS: -6.15 Total: -124.81 kcal Atomic # 8 Polarization: -37.26 SS G_CDS: -0.82 Total: -38.08 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -67.78 3.02 -64.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029407960.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.588 kcal (2) G-P(sol) polarization free energy of solvation -67.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds