Wall clock time and date at job start Wed Apr 1 2020 04:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.47080 * 2 1 4 4 C 1.34766 * 120.00390 * 252.29135 * 3 2 1 5 5 O 1.21518 * 120.00027 * 180.21844 * 4 3 2 6 6 C 1.48167 * 119.99926 * 0.21941 * 4 3 2 7 7 C 1.39609 * 120.89382 * 32.65761 * 6 4 3 8 8 C 1.38848 * 118.94792 * 179.77678 * 7 6 4 9 9 O 1.35690 * 119.61976 * 180.25063 * 8 7 6 10 10 N 1.32199 * 120.75920 * 0.51057 * 8 7 6 11 11 C 1.31884 * 121.97019 * 359.74035 * 10 8 7 12 12 C 1.50697 * 119.51295 * 179.97438 * 11 10 8 13 13 C 1.52994 * 117.49838 * 163.64260 * 12 11 10 14 14 C 1.52994 * 117.50012 * 95.01837 * 12 11 10 15 15 C 1.38024 * 120.97286 * 359.97438 * 11 10 8 16 16 C 1.46503 * 119.99419 * 72.29729 * 3 2 1 17 17 H 1.09001 * 110.88686 * 349.38083 * 16 3 2 18 18 C 1.55150 * 111.00527 * 113.26434 * 16 3 2 19 19 C 1.54323 * 102.94591 * 82.57080 * 18 16 3 20 20 N 1.47021 * 107.27014 * 22.19057 * 19 18 16 21 21 C 1.36936 * 125.64991 * 181.02467 * 20 19 18 22 22 H 1.07999 * 120.00014 * 180.02562 * 21 20 19 23 23 C 1.38806 * 119.99754 * 359.75087 * 21 20 19 24 24 N 1.31624 * 120.00084 * 0.27517 * 23 21 20 25 25 Si 1.86800 * 119.99869 * 180.27556 * 23 21 20 26 26 H 1.48499 * 109.47486 * 0.02562 * 25 23 21 27 27 H 1.48507 * 109.47309 * 120.00033 * 25 23 21 28 28 H 1.48507 * 109.47197 * 239.99744 * 25 23 21 29 29 C 1.47427 * 108.70246 * 1.29199 * 20 19 18 30 30 H 1.09000 * 109.47201 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47116 * 299.99783 * 1 2 3 32 32 H 1.09008 * 109.46984 * 59.99667 * 1 2 3 33 33 H 1.09001 * 109.46556 * 240.00648 * 2 1 3 34 34 H 1.08995 * 109.46762 * 120.00523 * 2 1 3 35 35 H 1.07999 * 120.51840 * 0.02562 * 7 6 4 36 36 H 0.96705 * 113.99753 * 270.25776 * 9 8 7 37 37 H 1.09002 * 115.54982 * 309.34933 * 12 11 10 38 38 H 1.08997 * 117.49997 * 0.02562 * 13 12 11 39 39 H 1.09000 * 117.49906 * 145.02012 * 13 12 11 40 40 H 1.08994 * 117.50260 * 214.97778 * 14 12 11 41 41 H 1.09000 * 117.49733 * 0.02562 * 14 12 11 42 42 H 1.07995 * 120.43342 * 180.02562 * 15 11 10 43 43 H 1.09003 * 110.72249 * 324.20176 * 18 16 3 44 44 H 1.09000 * 110.71950 * 200.93431 * 18 16 3 45 45 H 1.09005 * 109.88101 * 262.77677 * 19 18 16 46 46 H 1.09000 * 109.88710 * 141.60966 * 19 18 16 47 47 H 0.97000 * 119.99340 * 179.97438 * 24 23 21 48 48 H 1.08998 * 110.36686 * 94.48194 * 29 20 19 49 49 H 1.09001 * 110.36599 * 216.80132 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.5777 1.8983 -1.1118 5 8 2.9863 3.0427 -1.1105 6 6 2.6944 1.0713 -2.3357 7 6 1.7331 0.1069 -2.6434 8 6 1.8799 -0.6422 -3.8033 9 8 0.9509 -1.5797 -4.1183 10 7 2.9171 -0.4560 -4.6016 11 6 3.8470 0.4420 -4.3404 12 6 5.0064 0.6075 -5.2887 13 6 5.8401 1.8847 -5.1691 14 6 4.8950 1.6966 -6.3575 15 6 3.7739 1.2324 -3.2113 16 6 1.8987 2.2003 1.2087 17 1 1.2660 1.7106 1.9490 18 6 3.2956 2.5269 1.7998 19 6 3.7539 3.7353 0.9564 20 7 2.5466 4.3596 0.3960 21 6 2.5226 5.4522 -0.4291 22 1 1.5796 5.8368 -0.7886 23 6 3.7099 6.0688 -0.7987 24 7 4.8592 5.6001 -0.3605 25 14 3.6768 7.5640 -1.9180 26 1 2.2708 7.8894 -2.2680 27 1 4.2924 8.7201 -1.2181 28 1 4.4410 7.2716 -3.1573 29 6 1.3655 3.6183 0.8747 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 0.8865 -0.0512 -1.9917 36 1 1.1389 -2.4567 -3.7567 37 1 5.5279 -0.3109 -5.5585 38 1 5.5503 2.6051 -4.4042 39 1 6.9104 1.8068 -5.3600 40 1 5.3436 1.4949 -7.3302 41 1 3.9833 2.2937 -6.3744 42 1 4.5401 1.9654 -3.0061 43 1 3.9759 1.6853 1.6694 44 1 3.2150 2.7994 2.8521 45 1 4.4056 3.3987 0.1500 46 1 4.2814 4.4498 1.5884 47 1 5.6889 6.0309 -0.6192 48 1 0.9562 4.0922 1.7669 49 1 0.6088 3.5640 0.0920 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033853712.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:42 Heat of formation + Delta-G solvation = 92.387134 kcal Electronic energy + Delta-G solvation = -32462.216867 eV Core-core repulsion = 28394.687773 eV Total energy + Delta-G solvation = -4067.529095 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -40.98694 -39.59609 -37.88651 -36.59983 -35.81595 -35.58000 -32.68368 -31.81362 -30.30241 -29.83546 -28.86563 -27.24422 -24.90974 -24.64006 -23.92043 -22.97177 -22.33203 -21.58109 -20.69455 -19.85235 -18.78208 -17.86131 -17.11744 -16.92485 -16.38868 -16.32161 -15.81325 -15.51425 -15.10086 -14.63238 -14.44243 -14.35934 -13.84764 -13.67715 -13.53300 -13.21475 -13.10522 -12.37064 -12.11577 -12.06804 -11.89506 -11.86288 -11.75323 -11.64726 -11.58523 -11.35626 -11.31996 -10.74147 -10.72724 -10.67334 -10.60224 -10.43919 -10.10182 -9.94699 -9.78256 -9.55063 -9.49965 -9.42731 -8.70647 -8.65384 -8.45761 -7.86723 -6.27471 -5.42569 -2.67755 0.91492 0.98992 3.11492 3.31473 3.51547 3.52481 3.58299 3.59631 3.78099 3.96774 4.36510 4.62760 4.71498 4.83008 4.87125 4.92121 5.04671 5.08837 5.13054 5.14786 5.35608 5.38542 5.47792 5.51800 5.60486 5.66075 5.68303 5.68934 5.74544 5.77434 5.87489 5.89149 6.02204 6.08850 6.13132 6.16704 6.24008 6.26955 6.46629 6.50772 6.59297 6.62416 6.74811 7.23742 7.37374 7.76765 7.88579 7.89681 7.92461 8.10519 8.53670 9.01132 9.50094 10.11853 10.77613 11.70583 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008707 B = 0.005408 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3214.942749 B = 5176.389514 C = 7501.247665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.085 3.915 3 N -0.603 5.603 4 C 0.493 3.507 5 O -0.378 6.378 6 C -0.045 4.045 7 C -0.187 4.187 8 C 0.302 3.698 9 O -0.480 6.480 10 N -0.494 5.494 11 C 0.178 3.822 12 C -0.110 4.110 13 C -0.170 4.170 14 C -0.161 4.161 15 C -0.127 4.127 16 C 0.135 3.865 17 H 0.083 0.917 18 C -0.161 4.161 19 C 0.192 3.808 20 N -0.568 5.568 21 C -0.191 4.191 22 H 0.066 0.934 23 C -0.006 4.006 24 N -0.920 5.920 25 Si 0.897 3.103 26 H -0.285 1.285 27 H -0.295 1.295 28 H -0.295 1.295 29 C 0.129 3.871 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.066 0.934 35 H 0.160 0.840 36 H 0.396 0.604 37 H 0.122 0.878 38 H 0.108 0.892 39 H 0.103 0.897 40 H 0.100 0.900 41 H 0.096 0.904 42 H 0.152 0.848 43 H 0.057 0.943 44 H 0.062 0.938 45 H 0.059 0.941 46 H 0.030 0.970 47 H 0.243 0.757 48 H 0.024 0.976 49 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.676 -17.332 -2.270 17.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.039 4.039 3 N -0.341 5.341 4 C 0.276 3.724 5 O -0.242 6.242 6 C -0.057 4.057 7 C -0.208 4.208 8 C 0.123 3.877 9 O -0.287 6.287 10 N -0.213 5.213 11 C 0.041 3.959 12 C -0.129 4.129 13 C -0.208 4.208 14 C -0.199 4.199 15 C -0.147 4.147 16 C 0.031 3.969 17 H 0.101 0.899 18 C -0.200 4.200 19 C 0.068 3.932 20 N -0.293 5.293 21 C -0.320 4.320 22 H 0.084 0.916 23 C -0.201 4.201 24 N -0.570 5.570 25 Si 0.730 3.270 26 H -0.210 1.210 27 H -0.223 1.223 28 H -0.222 1.222 29 C 0.002 3.998 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.111 0.889 34 H 0.085 0.915 35 H 0.178 0.822 36 H 0.253 0.747 37 H 0.140 0.860 38 H 0.126 0.874 39 H 0.121 0.879 40 H 0.118 0.882 41 H 0.114 0.886 42 H 0.170 0.830 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.077 0.923 46 H 0.048 0.952 47 H 0.054 0.946 48 H 0.041 0.959 49 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -3.548 -16.550 -3.397 17.264 hybrid contribution -0.096 0.568 0.244 0.625 sum -3.644 -15.983 -3.153 16.693 Atomic orbital electron populations 1.22276 0.96243 1.01922 1.02904 1.22046 0.94242 0.84177 1.03396 1.47632 1.62176 1.12396 1.11934 1.18495 0.82780 0.88376 0.82739 1.91676 1.39412 1.12815 1.80283 1.20768 0.94095 0.94144 0.96650 1.22943 1.02074 0.98247 0.97521 1.18957 0.87620 0.92295 0.88848 1.84823 1.43488 1.21931 1.78416 1.66606 1.02019 1.20840 1.31871 1.19941 0.92451 0.90793 0.92740 1.20743 0.96750 0.95086 1.00328 1.23186 0.97725 0.98493 1.01354 1.22967 1.02095 1.00857 0.93973 1.22148 0.99011 0.99703 0.93836 1.22302 0.97329 0.92171 0.85140 0.89897 1.23393 0.95990 1.00909 0.99733 1.21118 0.89365 0.89079 0.93678 1.44151 0.99274 1.31522 1.54350 1.18821 0.92361 1.00855 1.19978 0.91563 1.24539 0.95450 0.99173 1.00945 1.69960 0.96263 1.41610 1.49163 0.86243 0.76871 0.83219 0.80686 1.21047 1.22310 1.22213 1.21816 0.91919 0.89368 0.96723 0.91732 0.91753 0.92066 0.88902 0.91526 0.82242 0.74739 0.86045 0.87420 0.87870 0.88182 0.88597 0.83036 0.92454 0.91963 0.92275 0.95179 0.94604 0.95890 0.94772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.66 9.21 37.16 0.34 -1.32 16 2 C 0.08 0.94 5.58 -4.04 -0.02 0.92 16 3 N -0.60 -9.50 2.62 -164.52 -0.43 -9.93 16 4 C 0.49 9.40 6.96 -12.19 -0.08 9.32 16 5 O -0.38 -9.13 8.74 5.35 0.05 -9.09 16 6 C -0.05 -0.75 5.45 -104.67 -0.57 -1.32 16 7 C -0.19 -2.57 7.41 -38.84 -0.29 -2.85 16 8 C 0.30 4.16 7.74 -17.17 -0.13 4.02 16 9 O -0.48 -5.38 13.56 -18.77 -0.25 -5.64 16 10 N -0.49 -7.48 10.27 -9.60 -0.10 -7.58 16 11 C 0.18 2.67 6.45 -82.65 -0.53 2.13 16 12 C -0.11 -1.39 6.21 -91.78 -0.57 -1.96 16 13 C -0.17 -2.08 9.79 -26.74 -0.26 -2.34 16 14 C -0.16 -1.92 10.23 -26.74 -0.27 -2.20 16 15 C -0.13 -2.09 8.95 -39.03 -0.35 -2.44 16 16 C 0.13 2.25 3.57 -65.66 -0.23 2.02 16 17 H 0.08 1.12 7.59 -51.93 -0.39 0.72 16 18 C -0.16 -2.99 6.52 -24.90 -0.16 -3.15 16 19 C 0.19 4.73 4.21 -3.06 -0.01 4.72 16 20 N -0.57 -14.54 1.74 -169.93 -0.29 -14.83 16 21 C -0.19 -5.49 8.83 -15.06 -0.13 -5.62 16 22 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 23 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 24 N -0.92 -27.70 10.31 55.49 0.57 -27.13 16 25 Si 0.90 23.24 29.55 -169.99 -5.02 18.21 16 26 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 27 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 28 H -0.29 -7.70 7.11 56.52 0.40 -7.30 16 29 C 0.13 2.69 6.25 -2.41 -0.02 2.67 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.62 7.64 -51.93 -0.40 0.23 16 32 H 0.06 0.66 6.91 -51.92 -0.36 0.30 16 33 H 0.09 1.00 4.09 -51.93 -0.21 0.78 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.16 1.88 3.49 -52.49 -0.18 1.70 16 36 H 0.40 2.24 9.06 45.56 0.41 2.66 16 37 H 0.12 1.34 8.14 -51.93 -0.42 0.91 16 38 H 0.11 1.54 6.38 -51.93 -0.33 1.21 16 39 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.15 2.68 6.21 -52.49 -0.33 2.35 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.06 1.64 5.69 -51.93 -0.30 1.35 16 46 H 0.03 0.84 7.50 -51.93 -0.39 0.45 16 47 H 0.24 7.20 8.31 -40.82 -0.34 6.86 16 48 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 379.09 15.07 5.71 5.71 Total: -1.00 -35.07 379.09 -9.42 -44.49 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -6.25 Total: 3.45 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: -3.40 Total: 2.34 kcal Atomic # 7 Polarization: -59.22 SS G_CDS: -0.25 Total: -59.47 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -0.21 Total: -14.73 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -5.02 Total: 18.21 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.07 -9.42 -44.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033853712.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.875 kcal (2) G-P(sol) polarization free energy of solvation -35.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds