Wall clock time and date at job start Wed Apr 1 2020 04:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.47080 * 2 1 4 4 C 1.34766 * 120.00390 * 252.29135 * 3 2 1 5 5 O 1.21518 * 120.00027 * 180.21844 * 4 3 2 6 6 C 1.48167 * 119.99926 * 0.21941 * 4 3 2 7 7 C 1.39609 * 120.89382 * 32.65761 * 6 4 3 8 8 C 1.38848 * 118.94792 * 179.77678 * 7 6 4 9 9 O 1.35690 * 119.61976 * 180.25063 * 8 7 6 10 10 N 1.32199 * 120.75920 * 0.51057 * 8 7 6 11 11 C 1.31884 * 121.97019 * 359.74035 * 10 8 7 12 12 C 1.50697 * 119.51295 * 179.97438 * 11 10 8 13 13 C 1.52994 * 117.49838 * 163.64260 * 12 11 10 14 14 C 1.52994 * 117.50012 * 95.01837 * 12 11 10 15 15 C 1.38024 * 120.97286 * 359.97438 * 11 10 8 16 16 C 1.46503 * 119.99419 * 72.29729 * 3 2 1 17 17 H 1.09001 * 110.88686 * 349.38083 * 16 3 2 18 18 C 1.55150 * 111.00527 * 113.26434 * 16 3 2 19 19 C 1.54323 * 102.94591 * 82.57080 * 18 16 3 20 20 N 1.47021 * 107.27014 * 22.19057 * 19 18 16 21 21 C 1.36936 * 125.64991 * 181.02467 * 20 19 18 22 22 H 1.07999 * 120.00014 * 180.02562 * 21 20 19 23 23 C 1.38806 * 119.99754 * 359.75087 * 21 20 19 24 24 N 1.31624 * 120.00084 * 0.27517 * 23 21 20 25 25 Si 1.86800 * 119.99869 * 180.27556 * 23 21 20 26 26 H 1.48499 * 109.47486 * 0.02562 * 25 23 21 27 27 H 1.48507 * 109.47309 * 120.00033 * 25 23 21 28 28 H 1.48507 * 109.47197 * 239.99744 * 25 23 21 29 29 C 1.47427 * 108.70246 * 1.29199 * 20 19 18 30 30 H 1.09000 * 109.47201 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47116 * 299.99783 * 1 2 3 32 32 H 1.09008 * 109.46984 * 59.99667 * 1 2 3 33 33 H 1.09001 * 109.46556 * 240.00648 * 2 1 3 34 34 H 1.08995 * 109.46762 * 120.00523 * 2 1 3 35 35 H 1.07999 * 120.51840 * 0.02562 * 7 6 4 36 36 H 0.96705 * 113.99753 * 270.25776 * 9 8 7 37 37 H 1.09002 * 115.54982 * 309.34933 * 12 11 10 38 38 H 1.08997 * 117.49997 * 0.02562 * 13 12 11 39 39 H 1.09000 * 117.49906 * 145.02012 * 13 12 11 40 40 H 1.08994 * 117.50260 * 214.97778 * 14 12 11 41 41 H 1.09000 * 117.49733 * 0.02562 * 14 12 11 42 42 H 1.07995 * 120.43342 * 180.02562 * 15 11 10 43 43 H 1.09003 * 110.72249 * 324.20176 * 18 16 3 44 44 H 1.09000 * 110.71950 * 200.93431 * 18 16 3 45 45 H 1.09005 * 109.88101 * 262.77677 * 19 18 16 46 46 H 1.09000 * 109.88710 * 141.60966 * 19 18 16 47 47 H 0.97000 * 119.99340 * 179.97438 * 24 23 21 48 48 H 1.08998 * 110.36686 * 94.48194 * 29 20 19 49 49 H 1.09001 * 110.36599 * 216.80132 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.5777 1.8983 -1.1118 5 8 2.9863 3.0427 -1.1105 6 6 2.6944 1.0713 -2.3357 7 6 1.7331 0.1069 -2.6434 8 6 1.8799 -0.6422 -3.8033 9 8 0.9509 -1.5797 -4.1183 10 7 2.9171 -0.4560 -4.6016 11 6 3.8470 0.4420 -4.3404 12 6 5.0064 0.6075 -5.2887 13 6 5.8401 1.8847 -5.1691 14 6 4.8950 1.6966 -6.3575 15 6 3.7739 1.2324 -3.2113 16 6 1.8987 2.2003 1.2087 17 1 1.2660 1.7106 1.9490 18 6 3.2956 2.5269 1.7998 19 6 3.7539 3.7353 0.9564 20 7 2.5466 4.3596 0.3960 21 6 2.5226 5.4522 -0.4291 22 1 1.5796 5.8368 -0.7886 23 6 3.7099 6.0688 -0.7987 24 7 4.8592 5.6001 -0.3605 25 14 3.6768 7.5640 -1.9180 26 1 2.2708 7.8894 -2.2680 27 1 4.2924 8.7201 -1.2181 28 1 4.4410 7.2716 -3.1573 29 6 1.3655 3.6183 0.8747 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 0.8865 -0.0512 -1.9917 36 1 1.1389 -2.4567 -3.7567 37 1 5.5279 -0.3109 -5.5585 38 1 5.5503 2.6051 -4.4042 39 1 6.9104 1.8068 -5.3600 40 1 5.3436 1.4949 -7.3302 41 1 3.9833 2.2937 -6.3744 42 1 4.5401 1.9654 -3.0061 43 1 3.9759 1.6853 1.6694 44 1 3.2150 2.7994 2.8521 45 1 4.4056 3.3987 0.1500 46 1 4.2814 4.4498 1.5884 47 1 5.6889 6.0309 -0.6192 48 1 0.9562 4.0922 1.7669 49 1 0.6088 3.5640 0.0920 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033853712.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:41 Heat of formation + Delta-G solvation = 67.181291 kcal Electronic energy + Delta-G solvation = -32463.309875 eV Core-core repulsion = 28394.687773 eV Total energy + Delta-G solvation = -4068.622102 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.19893 -40.95364 -38.86902 -38.05262 -37.09443 -36.84090 -34.40175 -33.27166 -31.65966 -30.96666 -30.55631 -28.90388 -26.52304 -25.96739 -25.39538 -23.93207 -23.36889 -22.71215 -22.01439 -21.73571 -19.95267 -19.14348 -18.60532 -18.25746 -17.89231 -17.45123 -17.11513 -16.69285 -16.53295 -16.27094 -15.80655 -15.59617 -15.54204 -15.37630 -14.60911 -14.33455 -14.26559 -13.69980 -13.56033 -13.45842 -13.40892 -13.14561 -12.89750 -12.87207 -12.83252 -12.75798 -12.63234 -12.37306 -12.32240 -12.11950 -11.96773 -11.78394 -11.62096 -11.52978 -11.41969 -11.38441 -10.89799 -10.75706 -10.51938 -10.10668 -9.80628 -9.39925 -8.29845 -7.63688 -4.86610 -0.28862 -0.16265 1.40768 1.42163 1.50160 1.92652 2.05276 2.41417 2.57660 2.58627 2.91460 3.28860 3.47314 3.54427 3.79844 3.82356 3.83834 3.92104 3.98686 3.99485 4.06199 4.11879 4.20060 4.33227 4.37702 4.42051 4.55620 4.56935 4.63124 4.70645 4.73834 4.84215 4.88245 4.91618 4.98091 5.02889 5.05542 5.11016 5.12626 5.16123 5.16630 5.35356 5.44509 5.53912 5.83682 5.92920 6.05543 6.42137 6.57039 6.62412 6.80699 7.33161 7.60389 8.03630 8.66927 9.48112 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008707 B = 0.005408 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3214.942749 B = 5176.389514 C = 7501.247665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.078 3.922 3 N -0.598 5.598 4 C 0.490 3.510 5 O -0.445 6.445 6 C -0.060 4.060 7 C -0.173 4.173 8 C 0.312 3.688 9 O -0.479 6.479 10 N -0.504 5.504 11 C 0.178 3.822 12 C -0.113 4.113 13 C -0.174 4.174 14 C -0.155 4.155 15 C -0.147 4.147 16 C 0.149 3.851 17 H 0.137 0.863 18 C -0.147 4.147 19 C 0.204 3.796 20 N -0.581 5.581 21 C -0.190 4.190 22 H 0.059 0.941 23 C -0.062 4.062 24 N -0.945 5.945 25 Si 0.952 3.048 26 H -0.276 1.276 27 H -0.295 1.295 28 H -0.301 1.301 29 C 0.123 3.877 30 H 0.097 0.903 31 H 0.067 0.933 32 H 0.045 0.955 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.184 0.816 36 H 0.423 0.577 37 H 0.144 0.856 38 H 0.075 0.925 39 H 0.127 0.873 40 H 0.129 0.871 41 H 0.077 0.923 42 H 0.125 0.875 43 H 0.069 0.931 44 H 0.084 0.916 45 H 0.020 0.980 46 H -0.017 1.017 47 H 0.234 0.766 48 H 0.037 0.963 49 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.815 -20.804 -2.090 21.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.043 4.043 3 N -0.334 5.334 4 C 0.274 3.726 5 O -0.314 6.314 6 C -0.071 4.071 7 C -0.194 4.194 8 C 0.133 3.867 9 O -0.290 6.290 10 N -0.224 5.224 11 C 0.041 3.959 12 C -0.131 4.131 13 C -0.212 4.212 14 C -0.192 4.192 15 C -0.168 4.168 16 C 0.045 3.955 17 H 0.154 0.846 18 C -0.186 4.186 19 C 0.079 3.921 20 N -0.306 5.306 21 C -0.320 4.320 22 H 0.077 0.923 23 C -0.254 4.254 24 N -0.597 5.597 25 Si 0.783 3.217 26 H -0.201 1.201 27 H -0.222 1.222 28 H -0.229 1.229 29 C -0.003 4.003 30 H 0.116 0.884 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.115 0.885 34 H 0.112 0.888 35 H 0.201 0.799 36 H 0.285 0.715 37 H 0.162 0.838 38 H 0.094 0.906 39 H 0.145 0.855 40 H 0.148 0.852 41 H 0.095 0.905 42 H 0.143 0.857 43 H 0.087 0.913 44 H 0.103 0.897 45 H 0.038 0.962 46 H 0.002 0.998 47 H 0.043 0.957 48 H 0.054 0.946 49 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -5.751 -20.108 -3.183 21.155 hybrid contribution 0.445 1.509 0.173 1.583 sum -5.306 -18.599 -3.009 19.574 Atomic orbital electron populations 1.22247 0.94359 1.03936 1.02295 1.22386 0.95614 0.81280 1.05001 1.47743 1.60911 1.14143 1.10588 1.18946 0.81655 0.87953 0.84048 1.91652 1.42440 1.15620 1.81638 1.20627 0.95263 0.95185 0.96048 1.23046 1.01647 0.96854 0.97865 1.19085 0.87129 0.92390 0.88126 1.84778 1.42441 1.23180 1.78555 1.66726 1.02506 1.20855 1.32311 1.20158 0.93142 0.90153 0.92398 1.20891 0.96173 0.95980 1.00085 1.23150 0.99125 0.97954 1.00946 1.23041 1.01252 0.99918 0.95038 1.22034 0.99214 1.00308 0.95265 1.22257 0.96349 0.90657 0.86220 0.84578 1.23233 0.97261 0.98309 0.99786 1.20765 0.88779 0.90167 0.92403 1.44271 1.01285 1.31233 1.53765 1.19015 0.91868 1.01486 1.19620 0.92343 1.25171 0.95405 1.01922 1.02933 1.70190 0.96300 1.42652 1.50533 0.85370 0.76961 0.80524 0.78812 1.20059 1.22215 1.22931 1.22029 0.90228 0.91620 0.96459 0.88387 0.91438 0.93622 0.88500 0.88801 0.79923 0.71537 0.83796 0.90642 0.85527 0.85245 0.90484 0.85735 0.91265 0.89716 0.96245 0.99850 0.95659 0.94572 0.95797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.41 9.21 71.98 0.66 -1.75 16 2 C 0.08 1.43 5.58 86.38 0.48 1.91 16 3 N -0.60 -17.69 2.62 -792.72 -2.07 -19.76 16 4 C 0.49 19.03 6.96 86.88 0.61 19.63 16 5 O -0.45 -22.76 8.74 -3.77 -0.03 -22.79 16 6 C -0.06 -2.01 5.45 -19.90 -0.11 -2.12 16 7 C -0.17 -4.44 7.41 22.75 0.17 -4.27 16 8 C 0.31 7.87 7.74 84.78 0.66 8.52 16 9 O -0.48 -8.97 13.56 -90.09 -1.22 -10.19 16 10 N -0.50 -14.56 10.27 -297.16 -3.05 -17.61 16 11 C 0.18 5.39 6.45 42.50 0.27 5.66 16 12 C -0.11 -2.81 6.21 -11.54 -0.07 -2.88 16 13 C -0.17 -4.43 9.79 30.59 0.30 -4.13 16 14 C -0.16 -3.65 10.23 30.59 0.31 -3.34 16 15 C -0.15 -5.15 8.95 22.63 0.20 -4.95 16 16 C 0.15 4.61 3.57 46.46 0.17 4.78 16 17 H 0.14 2.90 7.59 -2.39 -0.02 2.88 16 18 C -0.15 -5.28 6.52 31.78 0.21 -5.07 16 19 C 0.20 10.52 4.21 86.73 0.37 10.89 16 20 N -0.58 -30.87 1.74 -691.54 -1.20 -32.07 16 21 C -0.19 -11.39 8.83 84.03 0.74 -10.64 16 22 H 0.06 3.50 7.83 -2.91 -0.02 3.47 16 23 C -0.06 -3.82 5.49 84.86 0.47 -3.36 16 24 N -0.94 -60.74 10.31 21.65 0.22 -60.52 16 25 Si 0.95 50.14 29.55 68.60 2.03 52.17 16 26 H -0.28 -13.90 7.11 99.48 0.71 -13.19 16 27 H -0.29 -15.32 7.11 99.48 0.71 -14.61 16 28 H -0.30 -16.03 7.11 99.48 0.71 -15.33 16 29 C 0.12 5.03 6.25 86.93 0.54 5.58 16 30 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 0.96 7.64 -2.39 -0.02 0.94 16 32 H 0.04 0.81 6.91 -2.38 -0.02 0.79 16 33 H 0.10 1.72 4.09 -2.39 -0.01 1.71 16 34 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.18 3.72 3.49 -2.91 -0.01 3.71 16 36 H 0.42 2.91 9.06 -74.05 -0.67 2.24 16 37 H 0.14 2.92 8.14 -2.39 -0.02 2.90 16 38 H 0.08 2.42 6.38 -2.39 -0.02 2.41 16 39 H 0.13 2.55 8.14 -2.39 -0.02 2.53 16 40 H 0.13 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.12 4.98 6.21 -2.91 -0.02 4.97 16 43 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 44 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 45 H 0.02 1.17 5.69 -2.38 -0.01 1.15 16 46 H -0.02 -0.99 7.50 -2.39 -0.02 -1.00 16 47 H 0.23 14.79 8.31 -92.71 -0.77 14.02 16 48 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 49 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -83.93 379.09 0.97 -82.96 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 0.32 Total: 13.35 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: 5.97 Total: 14.46 kcal Atomic # 7 Polarization: -123.85 SS G_CDS: -6.10 Total: -129.96 kcal Atomic # 8 Polarization: -31.72 SS G_CDS: -1.25 Total: -32.98 kcal Atomic # 14 Polarization: 50.14 SS G_CDS: 2.03 Total: 52.17 kcal Total: -83.93 0.97 -82.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033853712.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.141 kcal (2) G-P(sol) polarization free energy of solvation -83.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds