Wall clock time and date at job start Wed Apr 1 2020 04:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.46998 * 2 1 4 4 C 1.34773 * 120.00170 * 259.32545 * 3 2 1 5 5 O 1.21518 * 120.00354 * 185.16655 * 4 3 2 6 6 C 1.48164 * 120.00025 * 5.16067 * 4 3 2 7 7 C 1.39611 * 120.89189 * 18.47583 * 6 4 3 8 8 C 1.38847 * 118.94873 * 179.77805 * 7 6 4 9 9 O 1.35692 * 119.62184 * 180.24876 * 8 7 6 10 10 N 1.32199 * 120.75816 * 0.50491 * 8 7 6 11 11 C 1.31881 * 121.97220 * 359.74058 * 10 8 7 12 12 C 1.50695 * 119.51302 * 179.97438 * 11 10 8 13 13 C 1.53005 * 117.49833 * 163.77171 * 12 11 10 14 14 C 1.52992 * 117.50077 * 95.11267 * 12 11 10 15 15 C 1.38027 * 120.97166 * 0.02562 * 11 10 8 16 16 C 1.46503 * 120.00054 * 79.32041 * 3 2 1 17 17 H 1.09005 * 110.88288 * 4.53215 * 16 3 2 18 18 C 1.55152 * 111.00482 * 240.60785 * 16 3 2 19 19 C 1.54319 * 102.94394 * 277.42695 * 18 16 3 20 20 N 1.47022 * 107.27024 * 337.80504 * 19 18 16 21 21 C 1.36937 * 125.64756 * 178.90305 * 20 19 18 22 22 H 1.08002 * 120.00103 * 175.16742 * 21 20 19 23 23 C 1.38809 * 120.00284 * 355.16287 * 21 20 19 24 24 N 1.31621 * 119.99948 * 5.17515 * 23 21 20 25 25 Si 1.86803 * 120.00288 * 185.17734 * 23 21 20 26 26 H 1.48500 * 109.46957 * 94.99528 * 25 23 21 27 27 H 1.48490 * 109.47145 * 215.00130 * 25 23 21 28 28 H 1.48500 * 109.46932 * 335.00093 * 25 23 21 29 29 C 1.47422 * 108.70167 * 358.94435 * 20 19 18 30 30 H 1.09003 * 109.47320 * 299.99632 * 1 2 3 31 31 H 1.09000 * 109.47216 * 60.00289 * 1 2 3 32 32 H 1.09001 * 109.46793 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47320 * 240.00368 * 2 1 3 34 34 H 1.08994 * 109.47273 * 120.00155 * 2 1 3 35 35 H 1.08001 * 120.51996 * 359.97438 * 7 6 4 36 36 H 0.96698 * 113.99432 * 270.25723 * 9 8 7 37 37 H 1.08997 * 115.54964 * 309.43556 * 12 11 10 38 38 H 1.09003 * 117.49934 * 359.97438 * 13 12 11 39 39 H 1.08993 * 117.50015 * 145.01534 * 13 12 11 40 40 H 1.09005 * 117.49859 * 214.97922 * 14 12 11 41 41 H 1.09007 * 117.50015 * 359.97233 * 14 12 11 42 42 H 1.07996 * 120.43138 * 180.02562 * 15 11 10 43 43 H 1.09005 * 110.72036 * 159.06362 * 18 16 3 44 44 H 1.09000 * 110.72455 * 35.79281 * 18 16 3 45 45 H 1.09002 * 109.88250 * 218.39582 * 19 18 16 46 46 H 1.08992 * 109.88304 * 97.22461 * 19 18 16 47 47 H 0.97001 * 119.99765 * 180.02562 * 24 23 21 48 48 H 1.09002 * 110.36699 * 142.96831 * 29 20 19 49 49 H 1.09000 * 110.36635 * 265.17638 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4467 1.9445 -1.1469 5 8 2.9387 3.0555 -1.1315 6 6 2.3180 1.2091 -2.4267 7 6 1.4382 0.1320 -2.5492 8 6 1.3464 -0.5254 -3.7686 9 8 0.4919 -1.5708 -3.9043 10 7 2.0855 -0.1479 -4.7976 11 6 2.9306 0.8613 -4.7174 12 6 3.7465 1.2441 -5.9252 13 6 4.4152 2.6203 -5.9188 14 6 3.2044 2.3614 -6.8188 15 6 3.0796 1.5715 -3.5433 16 6 2.0408 2.1502 1.2468 17 1 1.7395 1.5302 2.0912 18 6 1.1474 3.4140 1.1369 19 6 2.0689 4.4281 0.4271 20 7 3.4545 3.9920 0.6540 21 6 4.5756 4.6118 0.1701 22 1 5.5548 4.2580 0.4573 23 6 4.4536 5.6947 -0.6897 24 7 3.2644 6.1901 -0.9596 25 14 5.9772 6.4490 -1.4638 26 1 6.1932 5.8580 -2.8089 27 1 5.7923 7.9168 -1.5918 28 1 7.1572 6.1717 -0.6060 29 6 3.4370 2.7764 1.4878 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 0.8362 -0.1826 -1.7095 36 1 0.8827 -2.4286 -3.6886 37 1 4.2813 0.4270 -6.4095 38 1 4.2646 3.2490 -5.0412 39 1 5.3896 2.7086 -6.3991 40 1 3.3828 2.2795 -7.8910 41 1 2.2573 2.8193 -6.5334 42 1 3.7740 2.3967 -3.4875 43 1 0.8665 3.7749 2.1264 44 1 0.2624 3.2095 0.5343 45 1 1.9197 5.4224 0.8481 46 1 1.8541 4.4395 -0.6414 47 1 3.1792 6.9466 -1.5607 48 1 4.2211 2.0883 1.1719 49 1 3.5619 3.0357 2.5391 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033853713.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:49 Heat of formation + Delta-G solvation = 111.403188 kcal Electronic energy + Delta-G solvation = -32580.586176 eV Core-core repulsion = 28513.881679 eV Total energy + Delta-G solvation = -4066.704497 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.02804 -39.59734 -37.87065 -36.60411 -35.86486 -35.69091 -32.73092 -31.73701 -30.45707 -29.70778 -28.94112 -27.17022 -24.82803 -24.62621 -23.96002 -23.02240 -22.30907 -21.53324 -20.70422 -19.87688 -18.76793 -17.90077 -17.16444 -16.84955 -16.44727 -16.38788 -15.74689 -15.45475 -14.99900 -14.71209 -14.53477 -14.39137 -13.85872 -13.62839 -13.37600 -13.20794 -12.98709 -12.54818 -12.05122 -11.95325 -11.86120 -11.83616 -11.71956 -11.66433 -11.58324 -11.29842 -11.22578 -10.76214 -10.74500 -10.67392 -10.58960 -10.41243 -10.11447 -9.96367 -9.71049 -9.55930 -9.46033 -9.33462 -8.69571 -8.63458 -8.46274 -7.81073 -6.29940 -5.44466 -2.69212 0.92818 1.01935 3.14749 3.32842 3.51197 3.54205 3.56446 3.58049 3.84430 4.03381 4.38510 4.64392 4.70116 4.78495 4.87876 4.94331 5.10542 5.12509 5.13519 5.18124 5.32611 5.41489 5.48318 5.55651 5.61506 5.64871 5.67852 5.69755 5.71544 5.81676 5.87660 5.90620 6.04070 6.10900 6.13430 6.19258 6.24229 6.28961 6.49725 6.52221 6.60151 6.63437 6.74945 7.24310 7.39976 7.74647 7.89787 7.93101 7.94778 8.12289 8.53350 9.03951 9.48605 10.11186 10.77433 11.68542 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008813 B = 0.005689 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3176.274705 B = 4920.616556 C = 7574.473144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.080 3.920 3 N -0.604 5.604 4 C 0.489 3.511 5 O -0.376 6.376 6 C -0.047 4.047 7 C -0.211 4.211 8 C 0.299 3.701 9 O -0.481 6.481 10 N -0.494 5.494 11 C 0.176 3.824 12 C -0.110 4.110 13 C -0.171 4.171 14 C -0.161 4.161 15 C -0.124 4.124 16 C 0.136 3.864 17 H 0.083 0.917 18 C -0.160 4.160 19 C 0.189 3.811 20 N -0.568 5.568 21 C -0.202 4.202 22 H 0.067 0.933 23 C 0.000 4.000 24 N -0.914 5.914 25 Si 0.895 3.105 26 H -0.293 1.293 27 H -0.295 1.295 28 H -0.286 1.286 29 C 0.127 3.873 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.098 0.902 34 H 0.071 0.929 35 H 0.184 0.816 36 H 0.395 0.605 37 H 0.121 0.879 38 H 0.107 0.893 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.153 0.847 43 H 0.061 0.939 44 H 0.057 0.943 45 H 0.025 0.975 46 H 0.070 0.930 47 H 0.244 0.756 48 H 0.035 0.965 49 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.804 -16.341 -2.781 17.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.043 4.043 3 N -0.342 5.342 4 C 0.273 3.727 5 O -0.240 6.240 6 C -0.059 4.059 7 C -0.232 4.232 8 C 0.121 3.879 9 O -0.287 6.287 10 N -0.214 5.214 11 C 0.039 3.961 12 C -0.128 4.128 13 C -0.208 4.208 14 C -0.199 4.199 15 C -0.145 4.145 16 C 0.032 3.968 17 H 0.101 0.899 18 C -0.199 4.199 19 C 0.065 3.935 20 N -0.294 5.294 21 C -0.330 4.330 22 H 0.085 0.915 23 C -0.196 4.196 24 N -0.563 5.563 25 Si 0.727 3.273 26 H -0.220 1.220 27 H -0.222 1.222 28 H -0.211 1.211 29 C -0.001 4.001 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.115 0.885 34 H 0.089 0.911 35 H 0.200 0.800 36 H 0.252 0.748 37 H 0.139 0.861 38 H 0.126 0.874 39 H 0.121 0.879 40 H 0.118 0.882 41 H 0.114 0.886 42 H 0.171 0.829 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.043 0.957 46 H 0.088 0.912 47 H 0.055 0.945 48 H 0.053 0.947 49 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -4.965 -15.524 -3.813 16.738 hybrid contribution 0.941 0.168 0.340 1.015 sum -4.023 -15.356 -3.473 16.250 Atomic orbital electron populations 1.22390 0.96411 1.02205 1.03165 1.22251 0.94015 0.84385 1.03637 1.47584 1.66147 1.12681 1.07796 1.18400 0.83420 0.88022 0.82849 1.91606 1.34284 1.14529 1.83625 1.20732 0.95010 0.94092 0.96042 1.23822 1.01818 0.98129 0.99387 1.19008 0.89930 0.91088 0.87913 1.84813 1.35796 1.16857 1.91248 1.66583 1.05823 1.16520 1.32488 1.19931 0.92474 0.90391 0.93339 1.20740 1.02209 0.93372 0.96522 1.23202 0.97393 0.97208 1.03021 1.22973 0.98790 1.00877 0.97227 1.22187 1.00029 1.00537 0.91732 1.22279 0.98081 0.92027 0.84437 0.89868 1.23389 0.98704 0.97095 1.00726 1.21216 0.81856 0.91901 0.98482 1.44162 1.02470 1.25655 1.57097 1.18796 0.84604 1.08677 1.20967 0.91515 1.24580 0.95829 0.99082 1.00090 1.69950 1.20267 1.26216 1.39869 0.86347 0.82908 0.78295 0.79768 1.22047 1.22222 1.21143 1.21824 0.93491 0.90200 0.94549 0.91458 0.91580 0.91538 0.88455 0.91110 0.80011 0.74803 0.86094 0.87424 0.87906 0.88217 0.88618 0.82916 0.91999 0.92447 0.95653 0.91233 0.94495 0.94680 0.96021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.76 8.99 37.16 0.33 -1.42 16 2 C 0.08 0.89 5.51 -4.04 -0.02 0.87 16 3 N -0.60 -9.55 2.58 -164.66 -0.42 -9.97 16 4 C 0.49 9.38 7.05 -12.19 -0.09 9.30 16 5 O -0.38 -9.06 8.37 5.35 0.04 -9.02 16 6 C -0.05 -0.80 5.67 -104.68 -0.59 -1.39 16 7 C -0.21 -2.90 7.35 -38.84 -0.29 -3.19 16 8 C 0.30 4.17 7.74 -17.17 -0.13 4.04 16 9 O -0.48 -5.40 13.56 -18.78 -0.25 -5.65 16 10 N -0.49 -7.63 10.27 -9.60 -0.10 -7.73 16 11 C 0.18 2.71 6.46 -82.65 -0.53 2.18 16 12 C -0.11 -1.43 6.21 -91.78 -0.57 -2.00 16 13 C -0.17 -2.19 9.79 -26.69 -0.26 -2.45 16 14 C -0.16 -1.96 10.24 -26.70 -0.27 -2.23 16 15 C -0.12 -2.12 8.92 -39.03 -0.35 -2.47 16 16 C 0.14 2.27 3.77 -65.79 -0.25 2.02 16 17 H 0.08 1.11 7.99 -51.93 -0.41 0.70 16 18 C -0.16 -2.99 6.45 -24.90 -0.16 -3.15 16 19 C 0.19 4.70 4.18 -3.07 -0.01 4.69 16 20 N -0.57 -14.50 1.79 -170.08 -0.30 -14.80 16 21 C -0.20 -5.72 9.09 -15.06 -0.14 -5.86 16 22 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 23 C 0.00 0.00 5.34 -17.43 -0.09 -0.09 16 24 N -0.91 -27.54 10.34 55.49 0.57 -26.96 16 25 Si 0.89 22.80 29.56 -169.99 -5.02 17.78 16 26 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 27 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 28 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 29 C 0.13 2.62 6.38 -2.53 -0.02 2.60 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.74 6.78 -51.93 -0.35 0.39 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.10 1.04 4.31 -51.93 -0.22 0.82 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.18 2.09 2.06 -52.49 -0.11 1.98 16 36 H 0.40 2.29 9.06 45.56 0.41 2.70 16 37 H 0.12 1.40 8.14 -51.93 -0.42 0.97 16 38 H 0.11 1.62 6.38 -51.93 -0.33 1.29 16 39 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16 42 H 0.15 2.84 6.03 -52.49 -0.32 2.52 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.03 0.71 7.64 -51.93 -0.40 0.31 16 46 H 0.07 1.96 5.22 -51.93 -0.27 1.69 16 47 H 0.24 7.26 8.31 -40.82 -0.34 6.92 16 48 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 378.09 15.07 5.70 5.70 Total: -1.00 -34.79 378.09 -9.43 -44.22 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -6.20 Total: 5.01 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: -3.44 Total: 1.43 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: -0.25 Total: -59.46 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -0.21 Total: -14.67 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.79 -9.43 -44.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033853713.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.621 kcal (2) G-P(sol) polarization free energy of solvation -34.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds