Wall clock time and date at job start Wed Apr 1 2020 04:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.46998 * 2 1 4 4 C 1.34773 * 120.00170 * 259.32545 * 3 2 1 5 5 O 1.21518 * 120.00354 * 185.16655 * 4 3 2 6 6 C 1.48164 * 120.00025 * 5.16067 * 4 3 2 7 7 C 1.39611 * 120.89189 * 18.47583 * 6 4 3 8 8 C 1.38847 * 118.94873 * 179.77805 * 7 6 4 9 9 O 1.35692 * 119.62184 * 180.24876 * 8 7 6 10 10 N 1.32199 * 120.75816 * 0.50491 * 8 7 6 11 11 C 1.31881 * 121.97220 * 359.74058 * 10 8 7 12 12 C 1.50695 * 119.51302 * 179.97438 * 11 10 8 13 13 C 1.53005 * 117.49833 * 163.77171 * 12 11 10 14 14 C 1.52992 * 117.50077 * 95.11267 * 12 11 10 15 15 C 1.38027 * 120.97166 * 0.02562 * 11 10 8 16 16 C 1.46503 * 120.00054 * 79.32041 * 3 2 1 17 17 H 1.09005 * 110.88288 * 4.53215 * 16 3 2 18 18 C 1.55152 * 111.00482 * 240.60785 * 16 3 2 19 19 C 1.54319 * 102.94394 * 277.42695 * 18 16 3 20 20 N 1.47022 * 107.27024 * 337.80504 * 19 18 16 21 21 C 1.36937 * 125.64756 * 178.90305 * 20 19 18 22 22 H 1.08002 * 120.00103 * 175.16742 * 21 20 19 23 23 C 1.38809 * 120.00284 * 355.16287 * 21 20 19 24 24 N 1.31621 * 119.99948 * 5.17515 * 23 21 20 25 25 Si 1.86803 * 120.00288 * 185.17734 * 23 21 20 26 26 H 1.48500 * 109.46957 * 94.99528 * 25 23 21 27 27 H 1.48490 * 109.47145 * 215.00130 * 25 23 21 28 28 H 1.48500 * 109.46932 * 335.00093 * 25 23 21 29 29 C 1.47422 * 108.70167 * 358.94435 * 20 19 18 30 30 H 1.09003 * 109.47320 * 299.99632 * 1 2 3 31 31 H 1.09000 * 109.47216 * 60.00289 * 1 2 3 32 32 H 1.09001 * 109.46793 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47320 * 240.00368 * 2 1 3 34 34 H 1.08994 * 109.47273 * 120.00155 * 2 1 3 35 35 H 1.08001 * 120.51996 * 359.97438 * 7 6 4 36 36 H 0.96698 * 113.99432 * 270.25723 * 9 8 7 37 37 H 1.08997 * 115.54964 * 309.43556 * 12 11 10 38 38 H 1.09003 * 117.49934 * 359.97438 * 13 12 11 39 39 H 1.08993 * 117.50015 * 145.01534 * 13 12 11 40 40 H 1.09005 * 117.49859 * 214.97922 * 14 12 11 41 41 H 1.09007 * 117.50015 * 359.97233 * 14 12 11 42 42 H 1.07996 * 120.43138 * 180.02562 * 15 11 10 43 43 H 1.09005 * 110.72036 * 159.06362 * 18 16 3 44 44 H 1.09000 * 110.72455 * 35.79281 * 18 16 3 45 45 H 1.09002 * 109.88250 * 218.39582 * 19 18 16 46 46 H 1.08992 * 109.88304 * 97.22461 * 19 18 16 47 47 H 0.97001 * 119.99765 * 180.02562 * 24 23 21 48 48 H 1.09002 * 110.36699 * 142.96831 * 29 20 19 49 49 H 1.09000 * 110.36635 * 265.17638 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4467 1.9445 -1.1469 5 8 2.9387 3.0555 -1.1315 6 6 2.3180 1.2091 -2.4267 7 6 1.4382 0.1320 -2.5492 8 6 1.3464 -0.5254 -3.7686 9 8 0.4919 -1.5708 -3.9043 10 7 2.0855 -0.1479 -4.7976 11 6 2.9306 0.8613 -4.7174 12 6 3.7465 1.2441 -5.9252 13 6 4.4152 2.6203 -5.9188 14 6 3.2044 2.3614 -6.8188 15 6 3.0796 1.5715 -3.5433 16 6 2.0408 2.1502 1.2468 17 1 1.7395 1.5302 2.0912 18 6 1.1474 3.4140 1.1369 19 6 2.0689 4.4281 0.4271 20 7 3.4545 3.9920 0.6540 21 6 4.5756 4.6118 0.1701 22 1 5.5548 4.2580 0.4573 23 6 4.4536 5.6947 -0.6897 24 7 3.2644 6.1901 -0.9596 25 14 5.9772 6.4490 -1.4638 26 1 6.1932 5.8580 -2.8089 27 1 5.7923 7.9168 -1.5918 28 1 7.1572 6.1717 -0.6060 29 6 3.4370 2.7764 1.4878 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 0.8362 -0.1826 -1.7095 36 1 0.8827 -2.4286 -3.6886 37 1 4.2813 0.4270 -6.4095 38 1 4.2646 3.2490 -5.0412 39 1 5.3896 2.7086 -6.3991 40 1 3.3828 2.2795 -7.8910 41 1 2.2573 2.8193 -6.5334 42 1 3.7740 2.3967 -3.4875 43 1 0.8665 3.7749 2.1264 44 1 0.2624 3.2095 0.5343 45 1 1.9197 5.4224 0.8481 46 1 1.8541 4.4395 -0.6414 47 1 3.1792 6.9466 -1.5607 48 1 4.2211 2.0883 1.1719 49 1 3.5619 3.0357 2.5391 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033853713.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:47 Heat of formation + Delta-G solvation = 86.299587 kcal Electronic energy + Delta-G solvation = -32581.674749 eV Core-core repulsion = 28513.881679 eV Total energy + Delta-G solvation = -4067.793071 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.25709 -40.95103 -38.87761 -38.05533 -37.18557 -36.90116 -34.46340 -33.19689 -31.80031 -30.85638 -30.67501 -28.82129 -26.48187 -25.94183 -25.42068 -23.99161 -23.37108 -22.68061 -22.02419 -21.76281 -19.96709 -19.14574 -18.60947 -18.32451 -17.87181 -17.50620 -17.07950 -16.59165 -16.51755 -16.22168 -16.10891 -15.62619 -15.58758 -15.23956 -14.49117 -14.30019 -14.18540 -13.72904 -13.66478 -13.49220 -13.40643 -13.03935 -12.86099 -12.82130 -12.78808 -12.72868 -12.57414 -12.35082 -12.30622 -12.10378 -11.98185 -11.81734 -11.65021 -11.49054 -11.41896 -11.34216 -10.84924 -10.69082 -10.46158 -10.11858 -9.79314 -9.37167 -8.31176 -7.63900 -4.86924 -0.30589 -0.14655 1.41873 1.44168 1.51119 1.95455 2.06917 2.42042 2.59402 2.65190 2.90881 3.28466 3.48039 3.55120 3.79675 3.84060 3.85215 3.89282 3.97450 4.01376 4.05407 4.13461 4.21883 4.35354 4.37985 4.38473 4.54694 4.57630 4.63216 4.69004 4.74194 4.82850 4.87170 4.93167 4.97859 5.03548 5.06217 5.06989 5.12481 5.15017 5.18006 5.36847 5.43458 5.54883 5.82519 5.93432 6.10353 6.43310 6.58037 6.63645 6.81688 7.33159 7.62095 8.05031 8.68742 9.47955 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008813 B = 0.005689 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3176.274705 B = 4920.616556 C = 7574.473144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.073 3.927 3 N -0.598 5.598 4 C 0.486 3.514 5 O -0.441 6.441 6 C -0.064 4.064 7 C -0.195 4.195 8 C 0.309 3.691 9 O -0.478 6.478 10 N -0.504 5.504 11 C 0.175 3.825 12 C -0.113 4.113 13 C -0.178 4.178 14 C -0.151 4.151 15 C -0.147 4.147 16 C 0.150 3.850 17 H 0.139 0.861 18 C -0.145 4.145 19 C 0.201 3.799 20 N -0.584 5.584 21 C -0.201 4.201 22 H 0.062 0.938 23 C -0.056 4.056 24 N -0.942 5.942 25 Si 0.950 3.050 26 H -0.295 1.295 27 H -0.300 1.300 28 H -0.273 1.273 29 C 0.120 3.880 30 H 0.071 0.929 31 H 0.047 0.953 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.211 0.789 36 H 0.422 0.578 37 H 0.143 0.857 38 H 0.073 0.927 39 H 0.125 0.875 40 H 0.130 0.870 41 H 0.078 0.922 42 H 0.123 0.877 43 H 0.084 0.916 44 H 0.066 0.934 45 H -0.024 1.024 46 H 0.030 0.970 47 H 0.233 0.767 48 H 0.026 0.974 49 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.967 -20.454 -2.216 21.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.049 4.049 3 N -0.334 5.334 4 C 0.270 3.730 5 O -0.309 6.309 6 C -0.075 4.075 7 C -0.215 4.215 8 C 0.130 3.870 9 O -0.288 6.288 10 N -0.224 5.224 11 C 0.038 3.962 12 C -0.131 4.131 13 C -0.215 4.215 14 C -0.189 4.189 15 C -0.168 4.168 16 C 0.046 3.954 17 H 0.157 0.843 18 C -0.184 4.184 19 C 0.076 3.924 20 N -0.308 5.308 21 C -0.331 4.331 22 H 0.080 0.920 23 C -0.248 4.248 24 N -0.593 5.593 25 Si 0.781 3.219 26 H -0.223 1.223 27 H -0.227 1.227 28 H -0.198 1.198 29 C -0.006 4.006 30 H 0.090 0.910 31 H 0.066 0.934 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.227 0.773 36 H 0.284 0.716 37 H 0.161 0.839 38 H 0.092 0.908 39 H 0.143 0.857 40 H 0.148 0.852 41 H 0.097 0.903 42 H 0.141 0.859 43 H 0.102 0.898 44 H 0.085 0.915 45 H -0.006 1.006 46 H 0.048 0.952 47 H 0.042 0.958 48 H 0.045 0.955 49 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -6.133 -19.743 -3.204 20.921 hybrid contribution 1.255 1.260 0.187 1.788 sum -4.878 -18.483 -3.017 19.353 Atomic orbital electron populations 1.22358 0.94634 1.04297 1.02486 1.22599 0.95315 0.81469 1.05468 1.47699 1.64898 1.14418 1.06433 1.18875 0.82326 0.87444 0.84313 1.91596 1.37378 1.17136 1.84815 1.20635 0.96468 0.95406 0.94993 1.24011 1.00686 0.96440 1.00349 1.19169 0.88992 0.91465 0.87406 1.84769 1.35219 1.17670 1.91182 1.66700 1.06171 1.16414 1.33159 1.20133 0.92642 0.90038 0.93380 1.20887 1.02237 0.93940 0.96070 1.23153 0.98946 0.97018 1.02396 1.23050 0.97531 0.99672 0.98627 1.22061 1.00786 1.00730 0.93213 1.22248 0.94614 0.92113 0.86401 0.84327 1.23212 0.97803 0.96339 1.01078 1.20856 0.83196 0.91602 0.96721 1.44272 1.01908 1.27258 1.57410 1.19033 0.85607 1.08204 1.20259 0.91975 1.25217 0.98099 1.00259 1.01273 1.70197 1.21991 1.26472 1.40594 0.85455 0.80581 0.76982 0.78882 1.22307 1.22719 1.19797 1.22050 0.95985 0.88529 0.94062 0.91037 0.93405 0.88020 0.88058 0.87934 0.77321 0.71609 0.83908 0.90814 0.85714 0.85183 0.90299 0.85933 0.89791 0.91526 1.00594 0.95214 0.95758 0.95523 0.94694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.55 8.99 71.98 0.65 -1.90 16 2 C 0.07 1.29 5.51 86.38 0.48 1.77 16 3 N -0.60 -17.68 2.58 -793.16 -2.04 -19.72 16 4 C 0.49 18.99 7.05 86.88 0.61 19.61 16 5 O -0.44 -22.55 8.37 -3.77 -0.03 -22.58 16 6 C -0.06 -2.18 5.67 -19.90 -0.11 -2.29 16 7 C -0.20 -4.98 7.35 22.75 0.17 -4.81 16 8 C 0.31 7.86 7.74 84.78 0.66 8.51 16 9 O -0.48 -8.85 13.56 -90.11 -1.22 -10.07 16 10 N -0.50 -14.87 10.27 -297.16 -3.05 -17.92 16 11 C 0.17 5.45 6.46 42.50 0.27 5.73 16 12 C -0.11 -2.93 6.21 -11.54 -0.07 -3.00 16 13 C -0.18 -4.76 9.79 30.62 0.30 -4.46 16 14 C -0.15 -3.66 10.24 30.62 0.31 -3.34 16 15 C -0.15 -5.32 8.92 22.63 0.20 -5.12 16 16 C 0.15 4.62 3.77 46.38 0.17 4.80 16 17 H 0.14 2.88 7.99 -2.38 -0.02 2.86 16 18 C -0.15 -5.28 6.45 31.78 0.20 -5.08 16 19 C 0.20 10.48 4.18 86.73 0.36 10.84 16 20 N -0.58 -30.94 1.79 -692.02 -1.24 -32.17 16 21 C -0.20 -11.96 9.09 84.03 0.76 -11.20 16 22 H 0.06 3.64 7.83 -2.91 -0.02 3.62 16 23 C -0.06 -3.41 5.34 84.86 0.45 -2.96 16 24 N -0.94 -60.84 10.34 21.65 0.22 -60.61 16 25 Si 0.95 49.46 29.56 68.60 2.03 51.48 16 26 H -0.30 -15.29 7.11 99.48 0.71 -14.59 16 27 H -0.30 -15.69 7.11 99.48 0.71 -14.99 16 28 H -0.27 -13.45 7.11 99.48 0.71 -12.75 16 29 C 0.12 4.88 6.38 86.85 0.55 5.43 16 30 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.05 0.88 6.78 -2.39 -0.02 0.87 16 32 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.10 1.76 4.31 -2.39 -0.01 1.75 16 34 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.21 4.05 2.06 -2.91 -0.01 4.04 16 36 H 0.42 2.92 9.06 -74.06 -0.67 2.25 16 37 H 0.14 3.06 8.14 -2.39 -0.02 3.04 16 38 H 0.07 2.50 6.38 -2.39 -0.02 2.48 16 39 H 0.12 2.72 8.14 -2.39 -0.02 2.70 16 40 H 0.13 2.33 8.14 -2.38 -0.02 2.32 16 41 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 42 H 0.12 5.14 6.03 -2.91 -0.02 5.12 16 43 H 0.08 2.69 8.14 -2.38 -0.02 2.67 16 44 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 45 H -0.02 -1.44 7.64 -2.39 -0.02 -1.46 16 46 H 0.03 1.81 5.22 -2.39 -0.01 1.80 16 47 H 0.23 14.89 8.31 -92.71 -0.77 14.12 16 48 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 49 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -84.29 378.09 0.97 -83.32 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: 0.33 Total: 15.75 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: 5.98 Total: 12.52 kcal Atomic # 7 Polarization: -124.32 SS G_CDS: -6.11 Total: -130.43 kcal Atomic # 8 Polarization: -31.40 SS G_CDS: -1.25 Total: -32.65 kcal Atomic # 14 Polarization: 49.46 SS G_CDS: 2.03 Total: 51.48 kcal Total: -84.29 0.97 -83.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033853713.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.621 kcal (2) G-P(sol) polarization free energy of solvation -84.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds