Wall clock time and date at job start Wed Apr 1 2020 04:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.47091 * 2 1 4 4 C 1.34780 * 119.99333 * 250.43995 * 3 2 1 5 5 O 1.21596 * 119.99325 * 183.21174 * 4 3 2 6 6 C 1.47590 * 120.00371 * 3.21065 * 4 3 2 7 7 C 1.39747 * 120.07185 * 29.21020 * 6 4 3 8 8 C 1.37670 * 119.92206 * 179.75915 * 7 6 4 9 9 C 1.39136 * 120.07606 * 0.49474 * 8 7 6 10 10 N 1.39440 * 119.92690 * 179.73879 * 9 8 7 11 11 C 1.34772 * 119.99999 * 214.24536 * 10 9 8 12 12 C 1.50696 * 120.00257 * 185.31839 * 11 10 9 13 13 O 1.21280 * 120.00077 * 5.32746 * 11 10 9 14 14 C 1.39128 * 120.14351 * 359.76111 * 9 8 7 15 15 C 1.37671 * 120.07686 * 359.97438 * 14 9 8 16 16 C 1.46497 * 120.00470 * 70.43587 * 3 2 1 17 17 H 1.08999 * 110.77914 * 334.52171 * 16 3 2 18 18 C 1.55156 * 110.71936 * 97.75265 * 16 3 2 19 19 C 1.55137 * 101.48301 * 82.70092 * 18 16 3 20 20 N 1.47426 * 104.72127 * 37.29478 * 19 18 16 21 21 C 1.36928 * 125.64507 * 155.82120 * 20 19 18 22 22 H 1.08008 * 119.99879 * 179.68838 * 21 20 19 23 23 C 1.38808 * 120.00381 * 359.41550 * 21 20 19 24 24 N 1.31622 * 120.00086 * 0.27508 * 23 21 20 25 25 Si 1.86801 * 120.00393 * 180.27702 * 23 21 20 26 26 H 1.48506 * 109.47100 * 89.99684 * 25 23 21 27 27 H 1.48505 * 109.47187 * 209.99790 * 25 23 21 28 28 H 1.48502 * 109.47093 * 329.99758 * 25 23 21 29 29 C 1.47022 * 108.70057 * 335.55308 * 20 19 18 30 30 H 1.08998 * 109.46795 * 300.00087 * 1 2 3 31 31 H 1.08993 * 109.46906 * 60.00411 * 1 2 3 32 32 H 1.09003 * 109.46609 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47279 * 239.99324 * 2 1 3 34 34 H 1.09006 * 109.47102 * 119.99650 * 2 1 3 35 35 H 1.07999 * 120.03869 * 359.97438 * 7 6 4 36 36 H 1.07996 * 119.96039 * 180.23084 * 8 7 6 37 37 H 0.97009 * 119.99888 * 34.24955 * 10 9 8 38 38 H 1.08997 * 109.47103 * 59.99990 * 12 11 10 39 39 H 1.08998 * 109.47327 * 180.02562 * 12 11 10 40 40 H 1.09005 * 109.47362 * 300.00637 * 12 11 10 41 41 H 1.08005 * 119.95963 * 179.97438 * 14 9 8 42 42 H 1.07995 * 120.03295 * 179.97438 * 15 14 9 43 43 H 1.09004 * 111.00462 * 200.93769 * 18 16 3 44 44 H 1.09002 * 111.00826 * 324.75386 * 18 16 3 45 45 H 1.09005 * 110.49127 * 278.45287 * 19 18 16 46 46 H 1.09001 * 110.34216 * 156.06251 * 19 18 16 47 47 H 0.96996 * 120.00209 * 180.02562 * 24 23 21 48 48 H 1.08995 * 109.87944 * 120.71228 * 29 20 19 49 49 H 1.09005 * 109.88073 * 241.71293 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.6114 1.8862 -1.0999 5 8 3.0689 3.0126 -1.0810 6 6 2.7055 1.0720 -2.3273 7 6 1.7335 0.1066 -2.6035 8 6 1.8216 -0.6477 -3.7518 9 6 2.8824 -0.4570 -4.6317 10 7 2.9715 -1.2265 -5.7911 11 6 4.1787 -1.5891 -6.2681 12 6 4.2816 -2.3171 -7.5835 13 8 5.1824 -1.3295 -5.6387 14 6 3.8547 0.4996 -4.3570 15 6 3.7696 1.2611 -3.2132 16 6 1.8620 2.2135 1.1954 17 1 1.0205 1.8711 1.7976 18 6 3.1683 2.2226 2.0326 19 6 3.9984 3.3080 1.2979 20 7 3.0124 4.3305 0.9034 21 6 3.2852 5.6500 0.6596 22 1 2.4901 6.3212 0.3699 23 6 4.5824 6.1263 0.7901 24 7 5.5514 5.3083 1.1431 25 14 4.9532 7.9280 0.4650 26 1 4.8082 8.6986 1.7262 27 1 6.3427 8.0640 -0.0411 28 1 4.0036 8.4538 -0.5484 29 6 1.6888 3.6974 0.8088 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8901 35 1 0.9123 -0.0451 -1.9187 36 1 1.0688 -1.3913 -3.9677 37 1 2.1646 -1.5008 -6.2544 38 1 3.8607 -1.6977 -8.3755 39 1 5.3288 -2.5257 -7.8025 40 1 3.7294 -3.2551 -7.5238 41 1 4.6771 0.6449 -5.0419 42 1 4.5249 2.0031 -3.0005 43 1 2.9689 2.5106 3.0648 44 1 3.6673 1.2545 1.9888 45 1 4.4819 2.8870 0.4164 46 1 4.7412 3.7368 1.9706 47 1 6.4578 5.6412 1.2347 48 1 0.9963 4.1815 1.4973 49 1 1.3125 3.7756 -0.2112 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034027009.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:16 Heat of formation + Delta-G solvation = 43.361473 kcal Electronic energy + Delta-G solvation = -31350.813408 eV Core-core repulsion = 27281.158401 eV Total energy + Delta-G solvation = -4069.655007 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.90780 -40.12870 -38.28137 -36.21535 -35.67910 -34.74857 -32.30088 -31.07365 -31.01472 -30.09273 -29.15117 -28.58603 -26.99718 -24.40850 -23.78621 -23.02939 -22.82811 -20.89276 -20.79783 -19.82132 -18.57308 -18.01474 -17.34042 -17.01729 -16.50991 -16.07031 -15.45957 -15.12302 -15.04763 -14.82363 -14.37284 -14.19926 -14.07652 -13.60341 -13.54973 -13.20145 -13.17137 -13.09024 -12.91074 -12.47856 -12.38221 -12.35290 -11.95221 -11.80023 -11.53335 -11.35800 -11.27755 -11.18634 -10.76829 -10.66500 -10.61831 -10.47291 -10.09255 -9.91383 -9.90128 -9.59077 -9.32067 -8.93924 -8.84653 -8.37769 -8.17588 -7.94176 -6.43357 -5.33991 -2.70178 0.90253 1.35622 2.22826 2.73617 3.28032 3.38299 3.56446 3.60889 3.63538 3.99104 4.32304 4.69748 4.74246 4.77976 4.80336 4.84749 4.89002 5.00088 5.15529 5.28581 5.29555 5.38271 5.45095 5.48354 5.55112 5.65580 5.70039 5.75690 5.77421 5.91223 5.96856 6.03467 6.08823 6.14881 6.18617 6.38076 6.41588 6.51750 6.62613 6.72003 6.82024 6.89246 6.94503 7.03660 7.33671 7.76158 7.85430 7.92370 7.97559 8.15451 8.67467 8.91184 9.54057 10.16038 10.83629 11.70201 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012090 B = 0.003232 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.377552 B = 8660.082940 C =10322.379722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.080 3.920 3 N -0.603 5.603 4 C 0.526 3.474 5 O -0.447 6.447 6 C -0.131 4.131 7 C -0.096 4.096 8 C -0.158 4.158 9 C 0.155 3.845 10 N -0.675 5.675 11 C 0.506 3.494 12 C -0.173 4.173 13 O -0.519 6.519 14 C -0.127 4.127 15 C -0.043 4.043 16 C 0.135 3.865 17 H 0.080 0.920 18 C -0.161 4.161 19 C 0.163 3.837 20 N -0.576 5.576 21 C -0.195 4.195 22 H 0.070 0.930 23 C -0.018 4.018 24 N -0.924 5.924 25 Si 0.908 3.092 26 H -0.293 1.293 27 H -0.293 1.293 28 H -0.285 1.285 29 C 0.143 3.857 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.102 0.898 34 H 0.067 0.933 35 H 0.153 0.847 36 H 0.127 0.873 37 H 0.411 0.589 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.135 0.865 42 H 0.139 0.861 43 H 0.065 0.935 44 H 0.055 0.945 45 H 0.019 0.981 46 H 0.097 0.903 47 H 0.246 0.754 48 H 0.017 0.983 49 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.367 -21.105 -12.917 27.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.043 4.043 3 N -0.339 5.339 4 C 0.312 3.688 5 O -0.317 6.317 6 C -0.135 4.135 7 C -0.114 4.114 8 C -0.178 4.178 9 C 0.060 3.940 10 N -0.321 5.321 11 C 0.295 3.705 12 C -0.232 4.232 13 O -0.394 6.394 14 C -0.147 4.147 15 C -0.062 4.062 16 C 0.032 3.968 17 H 0.098 0.902 18 C -0.201 4.201 19 C 0.038 3.962 20 N -0.301 5.301 21 C -0.324 4.324 22 H 0.088 0.912 23 C -0.212 4.212 24 N -0.575 5.575 25 Si 0.740 3.260 26 H -0.221 1.221 27 H -0.220 1.220 28 H -0.211 1.211 29 C 0.016 3.984 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.119 0.881 34 H 0.086 0.914 35 H 0.170 0.830 36 H 0.145 0.855 37 H 0.247 0.753 38 H 0.110 0.890 39 H 0.115 0.885 40 H 0.109 0.891 41 H 0.153 0.847 42 H 0.157 0.843 43 H 0.083 0.917 44 H 0.073 0.927 45 H 0.037 0.963 46 H 0.115 0.885 47 H 0.057 0.943 48 H 0.035 0.965 49 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -10.162 -20.137 -12.544 25.809 hybrid contribution -0.315 0.525 -0.569 0.836 sum -10.476 -19.612 -13.113 25.814 Atomic orbital electron populations 1.22270 0.96278 1.01993 1.02858 1.22164 0.94101 0.84087 1.03986 1.47721 1.60315 1.12469 1.13404 1.18322 0.79945 0.87587 0.82921 1.91235 1.41683 1.16859 1.81924 1.20225 0.97314 0.98721 0.97213 1.21869 0.99321 0.93934 0.96304 1.20768 0.99763 1.02751 0.94513 1.17862 0.96685 0.91929 0.87492 1.43525 1.09654 1.52749 1.26142 1.21049 0.82716 0.78976 0.87790 1.21930 1.05988 1.01321 0.93977 1.90797 1.35657 1.53702 1.59212 1.21044 0.99871 0.94902 0.98894 1.21218 0.96530 0.96777 0.91688 1.22046 0.97808 0.91807 0.85120 0.90179 1.23532 0.97022 1.00636 0.98901 1.21914 0.91597 0.86183 0.96516 1.44138 1.01432 1.05055 1.79487 1.18966 0.93203 0.83300 1.36965 0.91208 1.24657 0.95697 0.97532 1.03317 1.69811 0.99845 1.32321 1.55482 0.86146 0.77141 0.85182 0.77531 1.22084 1.21988 1.21112 1.21324 0.90479 0.89023 0.97557 0.91716 0.92005 0.91631 0.88072 0.91423 0.83017 0.85503 0.75332 0.88972 0.88508 0.89129 0.84678 0.84323 0.91665 0.92651 0.96281 0.88485 0.94335 0.96509 0.95623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.58 9.16 37.16 0.34 -1.24 16 2 C 0.08 0.92 5.63 -4.04 -0.02 0.90 16 3 N -0.60 -9.96 2.59 -165.22 -0.43 -10.39 16 4 C 0.53 10.24 6.50 -12.44 -0.08 10.16 16 5 O -0.45 -11.21 10.39 5.28 0.05 -11.15 16 6 C -0.13 -2.10 5.48 -104.95 -0.58 -2.68 16 7 C -0.10 -1.14 7.38 -39.23 -0.29 -1.43 16 8 C -0.16 -1.58 9.94 -39.46 -0.39 -1.97 16 9 C 0.15 1.77 6.26 -83.73 -0.52 1.24 16 10 N -0.67 -5.37 5.32 -9.86 -0.05 -5.42 16 11 C 0.51 4.67 7.66 -10.99 -0.08 4.59 16 12 C -0.17 -0.74 10.32 36.00 0.37 -0.37 16 13 O -0.52 -7.46 14.81 5.56 0.08 -7.38 16 14 C -0.13 -1.83 8.62 -39.46 -0.34 -2.17 16 15 C -0.04 -0.71 9.58 -39.23 -0.38 -1.08 16 16 C 0.14 2.48 3.51 -66.10 -0.23 2.25 16 17 H 0.08 1.21 7.16 -51.93 -0.37 0.84 16 18 C -0.16 -3.28 6.78 -24.46 -0.17 -3.45 16 19 C 0.16 4.32 5.03 -2.40 -0.01 4.31 16 20 N -0.58 -15.97 2.16 -169.93 -0.37 -16.34 16 21 C -0.20 -5.91 10.27 -15.06 -0.15 -6.07 16 22 H 0.07 2.07 7.83 -52.48 -0.41 1.66 16 23 C -0.02 -0.54 5.49 -17.43 -0.10 -0.64 16 24 N -0.92 -29.13 10.08 55.49 0.56 -28.57 16 25 Si 0.91 23.93 29.55 -169.99 -5.02 18.91 16 26 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 27 H -0.29 -7.80 7.11 56.52 0.40 -7.40 16 28 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 29 C 0.14 3.27 5.93 -3.07 -0.02 3.25 16 30 H 0.06 0.62 7.24 -51.93 -0.38 0.24 16 31 H 0.06 0.58 6.93 -51.93 -0.36 0.22 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.10 1.11 4.01 -51.93 -0.21 0.90 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.15 1.52 3.13 -52.49 -0.16 1.35 16 36 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.41 1.61 8.82 -40.82 -0.36 1.25 16 38 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 39 H 0.10 0.47 8.12 -51.93 -0.42 0.05 16 40 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 41 H 0.14 2.01 6.47 -52.48 -0.34 1.67 16 42 H 0.14 2.54 7.91 -52.49 -0.42 2.13 16 43 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 45 H 0.02 0.57 6.23 -51.93 -0.32 0.24 16 46 H 0.10 2.90 5.85 -51.93 -0.30 2.60 16 47 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 48 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.03 0.63 6.54 -51.93 -0.34 0.29 16 LS Contribution 379.38 15.07 5.72 5.72 Total: -1.00 -39.23 379.38 -9.02 -48.25 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -6.91 Total: 0.76 kcal Atomic # 6 Polarization: 8.25 SS G_CDS: -2.65 Total: 5.60 kcal Atomic # 7 Polarization: -60.43 SS G_CDS: -0.29 Total: -60.72 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: 0.14 Total: -18.53 kcal Atomic # 14 Polarization: 23.93 SS G_CDS: -5.02 Total: 18.91 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -39.23 -9.02 -48.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034027009.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.616 kcal (2) G-P(sol) polarization free energy of solvation -39.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds