Wall clock time and date at job start Wed Apr 1 2020 04:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.47091 * 2 1 4 4 C 1.34780 * 119.99798 * 243.40287 * 3 2 1 5 5 O 1.21584 * 119.99777 * 186.40681 * 4 3 2 6 6 C 1.47602 * 119.99924 * 6.39911 * 4 3 2 7 7 C 1.39748 * 120.07335 * 31.65161 * 6 4 3 8 8 C 1.37670 * 119.92156 * 179.71292 * 7 6 4 9 9 C 1.39131 * 120.07575 * 0.54393 * 8 7 6 10 10 N 1.39446 * 119.92665 * 179.74018 * 9 8 7 11 11 C 1.34775 * 119.99456 * 213.96346 * 10 9 8 12 12 C 1.50705 * 119.99610 * 185.39105 * 11 10 9 13 13 O 1.21274 * 120.00619 * 5.39305 * 11 10 9 14 14 C 1.39136 * 120.14692 * 359.75135 * 9 8 7 15 15 C 1.37666 * 120.07198 * 359.96771 * 14 9 8 16 16 C 1.46492 * 120.00256 * 63.40097 * 3 2 1 17 17 H 1.09006 * 110.78080 * 13.96597 * 16 3 2 18 18 C 1.55150 * 110.72437 * 250.72927 * 16 3 2 19 19 C 1.54918 * 101.61288 * 277.11965 * 18 16 3 20 20 N 1.47468 * 104.81054 * 323.03864 * 19 18 16 21 21 C 1.36933 * 125.62716 * 204.05087 * 20 19 18 22 22 H 1.08007 * 119.99430 * 180.02562 * 21 20 19 23 23 C 1.38806 * 120.00397 * 0.02608 * 21 20 19 24 24 N 1.31619 * 119.99832 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00146 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46987 * 60.00300 * 25 23 21 27 27 H 1.48496 * 109.47031 * 179.97438 * 25 23 21 28 28 H 1.48494 * 109.47434 * 299.99844 * 25 23 21 29 29 C 1.47024 * 108.71843 * 24.07266 * 20 19 18 30 30 H 1.08997 * 109.47023 * 299.99851 * 1 2 3 31 31 H 1.09002 * 109.47158 * 60.00009 * 1 2 3 32 32 H 1.08995 * 109.47222 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46690 * 239.99719 * 2 1 3 34 34 H 1.09002 * 109.47158 * 119.99991 * 2 1 3 35 35 H 1.07996 * 120.03389 * 359.97438 * 7 6 4 36 36 H 1.07999 * 119.95933 * 180.27306 * 8 7 6 37 37 H 0.97000 * 119.99849 * 33.96308 * 10 9 8 38 38 H 1.09008 * 109.47218 * 359.97438 * 12 11 10 39 39 H 1.08997 * 109.47228 * 119.99791 * 12 11 10 40 40 H 1.09004 * 109.47101 * 240.00223 * 12 11 10 41 41 H 1.08000 * 119.96025 * 179.97438 * 14 9 8 42 42 H 1.07999 * 120.03368 * 180.02562 * 15 14 9 43 43 H 1.09002 * 111.00639 * 35.20389 * 18 16 3 44 44 H 1.09000 * 111.01111 * 159.02557 * 18 16 3 45 45 H 1.08999 * 110.36533 * 81.84502 * 19 18 16 46 46 H 1.08999 * 110.36461 * 204.16885 * 19 18 16 47 47 H 0.97005 * 120.00012 * 180.02562 * 24 23 21 48 48 H 1.09010 * 109.87804 * 239.55415 * 29 20 19 49 49 H 1.09001 * 109.88235 * 118.39771 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.7357 1.8424 -1.0437 5 8 3.2395 2.9478 -0.9941 6 6 2.9097 1.0053 -2.2469 7 6 1.9035 0.1154 -2.6325 8 6 2.0667 -0.6596 -3.7586 9 6 3.2363 -0.5657 -4.5061 10 7 3.4005 -1.3561 -5.6432 11 6 4.6238 -1.8150 -5.9738 12 6 4.8232 -2.5658 -7.2652 13 8 5.5642 -1.6238 -5.2323 14 6 4.2426 0.3148 -4.1216 15 6 4.0835 1.0968 -2.9998 16 6 1.7270 2.2612 1.1344 17 1 1.3632 1.6865 1.9862 18 6 0.7024 3.3545 0.7321 19 6 1.6187 4.4100 0.0640 20 7 2.8595 4.3902 0.8606 21 6 3.7565 5.4196 0.9657 22 1 4.6396 5.3059 1.5770 23 6 3.5307 6.6089 0.2866 24 7 2.4543 6.7475 -0.4580 25 14 4.7540 8.0134 0.4305 26 1 6.0817 7.5657 -0.0616 27 1 4.2862 9.1627 -0.3851 28 1 4.8669 8.4278 1.8519 29 6 2.9744 3.0825 1.5227 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 0.9973 0.0388 -2.0500 36 1 1.2876 -1.3443 -4.0595 37 1 2.6343 -1.5756 -6.1960 38 1 3.8725 -2.6388 -7.7936 39 1 5.5447 -2.0351 -7.8864 40 1 5.1963 -3.5670 -7.0495 41 1 5.1495 0.3849 -4.7038 42 1 4.8649 1.7803 -2.7021 43 1 -0.0266 2.9645 0.0217 44 1 0.2064 3.7676 1.6104 45 1 1.8270 4.1320 -0.9691 46 1 1.1555 5.3958 0.1065 47 1 2.2967 7.5786 -0.9329 48 1 3.0084 3.2163 2.6040 49 1 3.8752 2.5722 1.1818 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034027010.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:21 Heat of formation + Delta-G solvation = 13.772364 kcal Electronic energy + Delta-G solvation = -31390.100145 eV Core-core repulsion = 27319.162058 eV Total energy + Delta-G solvation = -4070.938087 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.97060 -41.27616 -39.44099 -37.83721 -36.93638 -35.80429 -34.19985 -32.19452 -31.90115 -31.30596 -30.76044 -29.76397 -28.60838 -26.45764 -24.89776 -24.15754 -23.69423 -22.30278 -21.94292 -21.60435 -19.93908 -18.92500 -18.82001 -18.18024 -17.96363 -17.13513 -16.95358 -16.45902 -16.34078 -16.07743 -15.84314 -15.62078 -15.26012 -15.02771 -14.79682 -14.47311 -14.18500 -14.17237 -13.77438 -13.63060 -13.50846 -13.36667 -13.29219 -13.17268 -13.02639 -12.85180 -12.78575 -12.57281 -12.30954 -12.23069 -12.04392 -12.00167 -11.75388 -11.64565 -11.37802 -11.28516 -10.99673 -10.67739 -10.31599 -9.96662 -9.40300 -9.15823 -8.62505 -7.64529 -5.02421 -0.17277 0.32431 1.39814 1.45367 1.45768 1.50944 2.00528 2.06484 2.14638 2.54395 2.80361 3.41036 3.61840 3.71262 3.84050 3.88946 3.93137 3.97776 4.11421 4.21642 4.29081 4.33783 4.37401 4.43197 4.46354 4.54338 4.64347 4.65747 4.74803 4.85104 4.92710 4.97030 5.02740 5.06268 5.07937 5.09699 5.13728 5.18130 5.22770 5.33742 5.39677 5.48228 5.51302 5.85379 5.90238 5.90660 6.00763 6.40338 6.44452 6.62363 7.10313 7.24149 7.52081 7.96404 8.61287 9.36697 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012344 B = 0.003218 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.757932 B = 8699.275754 C =10335.676958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.076 3.924 3 N -0.599 5.599 4 C 0.515 3.485 5 O -0.515 6.515 6 C -0.154 4.154 7 C -0.073 4.073 8 C -0.136 4.136 9 C 0.162 3.838 10 N -0.657 5.657 11 C 0.501 3.499 12 C -0.159 4.159 13 O -0.579 6.579 14 C -0.141 4.141 15 C -0.069 4.069 16 C 0.152 3.848 17 H 0.131 0.869 18 C -0.141 4.141 19 C 0.164 3.836 20 N -0.594 5.594 21 C -0.218 4.218 22 H 0.065 0.935 23 C -0.075 4.075 24 N -0.948 5.948 25 Si 0.974 3.026 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.273 1.273 29 C 0.134 3.866 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.098 0.902 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.170 0.830 36 H 0.181 0.819 37 H 0.435 0.565 38 H 0.115 0.885 39 H 0.103 0.897 40 H 0.108 0.892 41 H 0.121 0.879 42 H 0.099 0.901 43 H 0.079 0.921 44 H 0.076 0.924 45 H -0.001 1.001 46 H 0.052 0.948 47 H 0.239 0.761 48 H 0.028 0.972 49 H -0.003 1.003 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.450 -27.461 -11.332 30.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.045 4.045 3 N -0.334 5.334 4 C 0.304 3.696 5 O -0.390 6.390 6 C -0.157 4.157 7 C -0.091 4.091 8 C -0.155 4.155 9 C 0.067 3.933 10 N -0.305 5.305 11 C 0.292 3.708 12 C -0.218 4.218 13 O -0.458 6.458 14 C -0.161 4.161 15 C -0.089 4.089 16 C 0.049 3.951 17 H 0.148 0.852 18 C -0.180 4.180 19 C 0.040 3.960 20 N -0.318 5.318 21 C -0.348 4.348 22 H 0.083 0.917 23 C -0.266 4.266 24 N -0.599 5.599 25 Si 0.803 3.197 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.199 1.199 29 C 0.007 3.993 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.117 0.883 33 H 0.125 0.875 34 H 0.100 0.900 35 H 0.187 0.813 36 H 0.198 0.802 37 H 0.276 0.724 38 H 0.134 0.866 39 H 0.121 0.879 40 H 0.126 0.874 41 H 0.139 0.861 42 H 0.117 0.883 43 H 0.097 0.903 44 H 0.094 0.906 45 H 0.016 0.984 46 H 0.070 0.930 47 H 0.049 0.951 48 H 0.046 0.954 49 H 0.015 0.985 Dipole moment (debyes) X Y Z Total from point charges -7.452 -26.592 -10.920 29.697 hybrid contribution 1.112 1.500 -0.203 1.879 sum -6.340 -25.091 -11.124 28.169 Atomic orbital electron populations 1.22219 0.93600 1.04028 1.02699 1.22459 0.96271 0.80722 1.05006 1.47837 1.54008 1.13505 1.18040 1.18914 0.80262 0.86448 0.84014 1.91195 1.46095 1.20694 1.81023 1.20031 0.97363 1.00911 0.97445 1.21812 0.98584 0.92519 0.96211 1.21234 0.98050 1.02174 0.94070 1.17985 0.95089 0.90960 0.89290 1.43596 1.11993 1.49542 1.25346 1.22045 0.81388 0.78151 0.89170 1.21910 1.06684 1.01508 0.91738 1.90777 1.42345 1.58678 1.54000 1.20921 1.00557 0.96562 0.98081 1.20953 0.96587 0.97039 0.94339 1.21906 0.93885 0.90613 0.88737 0.85179 1.23334 0.97188 0.96578 1.00927 1.21727 0.85125 0.96886 0.92312 1.44378 1.23578 1.10180 1.53700 1.19280 1.01073 0.91857 1.22617 0.91704 1.25498 1.00301 1.00576 1.00271 1.70127 1.28407 1.25261 1.36106 0.85203 0.78041 0.78840 0.77581 1.21713 1.21771 1.19905 1.21550 0.96087 0.87088 0.94527 0.91945 0.92502 0.88330 0.87482 0.90011 0.81254 0.80177 0.72445 0.86616 0.87901 0.87396 0.86126 0.88290 0.90280 0.90570 0.98379 0.93016 0.95116 0.95412 0.98466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 9.27 71.98 0.67 -1.65 16 2 C 0.08 1.49 5.60 86.38 0.48 1.97 16 3 N -0.60 -19.17 2.63 -794.92 -2.09 -21.26 16 4 C 0.52 21.00 6.45 86.71 0.56 21.56 16 5 O -0.52 -28.15 10.24 -3.98 -0.04 -28.19 16 6 C -0.15 -5.10 5.40 -20.08 -0.11 -5.21 16 7 C -0.07 -1.59 7.34 22.50 0.17 -1.43 16 8 C -0.14 -2.21 9.94 22.35 0.22 -1.99 16 9 C 0.16 3.41 6.26 38.36 0.24 3.65 16 10 N -0.66 -8.49 5.32 -303.49 -1.61 -10.11 16 11 C 0.50 8.23 7.66 87.66 0.67 8.90 16 12 C -0.16 -0.83 10.39 71.24 0.74 -0.09 16 13 O -0.58 -16.48 14.81 -3.01 -0.04 -16.52 16 14 C -0.14 -4.23 8.63 22.35 0.19 -4.04 16 15 C -0.07 -2.49 9.59 22.50 0.22 -2.27 16 16 C 0.15 5.36 3.05 46.18 0.14 5.50 16 17 H 0.13 3.39 7.91 -2.38 -0.02 3.38 16 18 C -0.14 -5.54 6.69 31.99 0.21 -5.33 16 19 C 0.16 9.12 4.92 86.85 0.43 9.54 16 20 N -0.59 -34.67 2.23 -691.86 -1.54 -36.21 16 21 C -0.22 -13.97 10.27 84.03 0.86 -13.10 16 22 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 23 C -0.07 -4.79 5.49 84.86 0.47 -4.33 16 24 N -0.95 -63.09 10.09 21.65 0.22 -62.87 16 25 Si 0.97 51.45 29.55 68.60 2.03 53.48 16 26 H -0.29 -15.22 7.11 99.48 0.71 -14.51 16 27 H -0.29 -15.21 7.11 99.48 0.71 -14.50 16 28 H -0.27 -13.61 7.11 99.48 0.71 -12.91 16 29 C 0.13 6.33 5.98 86.73 0.52 6.85 16 30 H 0.06 0.94 7.67 -2.39 -0.02 0.92 16 31 H 0.06 0.86 7.04 -2.39 -0.02 0.84 16 32 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.11 1.94 3.96 -2.39 -0.01 1.93 16 34 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.17 2.84 3.94 -2.91 -0.01 2.83 16 36 H 0.18 1.13 8.06 -2.91 -0.02 1.11 16 37 H 0.43 1.44 8.66 -92.71 -0.80 0.63 16 38 H 0.12 -0.25 7.92 -2.38 -0.02 -0.26 16 39 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.11 0.43 8.14 -2.38 -0.02 0.41 16 41 H 0.12 3.89 6.45 -2.91 -0.02 3.87 16 42 H 0.10 4.13 7.95 -2.91 -0.02 4.10 16 43 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 44 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 45 H 0.00 -0.09 5.53 -2.39 -0.01 -0.10 16 46 H 0.05 3.27 5.88 -2.39 -0.01 3.26 16 47 H 0.24 15.47 8.31 -92.70 -0.77 14.70 16 48 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 49 H 0.00 -0.13 7.15 -2.39 -0.02 -0.15 16 Total: -1.00 -98.00 380.36 3.78 -94.21 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: 0.19 Total: 8.93 kcal Atomic # 6 Polarization: 11.87 SS G_CDS: 6.68 Total: 18.55 kcal Atomic # 7 Polarization: -125.43 SS G_CDS: -5.02 Total: -130.46 kcal Atomic # 8 Polarization: -44.63 SS G_CDS: -0.09 Total: -44.71 kcal Atomic # 14 Polarization: 51.45 SS G_CDS: 2.03 Total: 53.48 kcal Total: -98.00 3.78 -94.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034027010.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.984 kcal (2) G-P(sol) polarization free energy of solvation -97.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds