Wall clock time and date at job start Wed Apr 1 2020 04:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.46680 * 2 1 4 4 C 1.34781 * 119.99788 * 82.74400 * 3 2 1 5 5 O 1.21551 * 119.99585 * 184.24620 * 4 3 2 6 6 C 1.47925 * 120.00163 * 4.24319 * 4 3 2 7 7 C 1.39470 * 119.71474 * 173.33941 * 6 4 3 8 8 C 1.38404 * 119.06540 * 179.97438 * 7 6 4 9 9 C 1.38697 * 118.72650 * 359.86296 * 8 7 6 10 10 C 1.39544 * 119.04024 * 0.21292 * 9 8 7 11 11 N 1.31299 * 120.84726 * 359.83341 * 10 9 8 12 12 O 1.35526 * 121.72435 * 180.28589 * 9 8 7 13 13 C 1.42877 * 117.75850 * 342.72164 * 12 9 8 14 14 C 1.53395 * 108.52880 * 49.23672 * 13 12 9 15 15 C 1.50583 * 119.60755 * 179.66835 * 8 7 6 16 16 C 1.46498 * 120.00112 * 262.73436 * 3 2 1 17 17 H 1.08998 * 110.88422 * 10.16795 * 16 3 2 18 18 C 1.55156 * 111.00733 * 246.28324 * 16 3 2 19 19 C 1.54328 * 102.94194 * 277.42893 * 18 16 3 20 20 N 1.47020 * 107.26943 * 337.80722 * 19 18 16 21 21 C 1.36945 * 125.65011 * 178.99126 * 20 19 18 22 22 H 1.07992 * 120.00178 * 179.97438 * 21 20 19 23 23 C 1.38807 * 119.99569 * 359.97202 * 21 20 19 24 24 N 1.31624 * 120.00135 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99905 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47034 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.46940 * 119.99938 * 25 23 21 28 28 H 1.48497 * 109.46958 * 239.99928 * 25 23 21 29 29 C 1.47428 * 108.70514 * 358.93917 * 20 19 18 30 30 H 1.09001 * 109.47028 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47253 * 299.99981 * 1 2 3 32 32 H 1.08997 * 109.47596 * 59.99814 * 1 2 3 33 33 H 1.08992 * 109.47432 * 239.99985 * 2 1 3 34 34 H 1.08998 * 109.47042 * 119.99662 * 2 1 3 35 35 H 1.08004 * 120.46495 * 359.96328 * 7 6 4 36 36 H 1.08001 * 119.58229 * 179.83255 * 10 9 8 37 37 H 1.09002 * 109.62641 * 289.52865 * 13 12 9 38 38 H 1.08998 * 109.62922 * 168.95291 * 13 12 9 39 39 H 1.08994 * 109.69062 * 55.03975 * 14 13 12 40 40 H 1.09003 * 109.69230 * 175.57249 * 14 13 12 41 41 H 1.08996 * 109.50451 * 42.53914 * 15 8 7 42 42 H 1.09000 * 109.46458 * 282.55491 * 15 8 7 43 43 H 1.09001 * 110.71954 * 35.79027 * 18 16 3 44 44 H 1.09000 * 110.72134 * 159.06584 * 18 16 3 45 45 H 1.08998 * 109.88401 * 97.22442 * 19 18 16 46 46 H 1.08999 * 109.87874 * 218.39113 * 19 18 16 47 47 H 0.97003 * 119.99876 * 180.02562 * 24 23 21 48 48 H 1.08997 * 110.36988 * 265.29008 * 29 20 19 49 49 H 1.09000 * 110.36342 * 142.96919 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1038 2.0658 1.1579 5 8 2.4350 3.2352 1.1495 6 6 1.7946 1.3938 2.4389 7 6 2.0182 2.0628 3.6421 8 6 1.7237 1.4216 4.8328 9 6 1.2122 0.1332 4.7873 10 6 1.0161 -0.4744 3.5465 11 7 1.3060 0.1590 2.4334 12 8 0.8973 -0.5488 5.9153 13 6 1.4414 -0.0796 7.1504 14 6 1.1849 1.4292 7.2541 15 6 1.9673 2.1297 6.1392 16 6 2.4136 2.0185 -1.2585 17 1 2.1208 1.4073 -2.1122 18 6 3.9374 2.3099 -1.2797 19 6 4.0456 3.6403 -0.5050 20 7 2.7295 4.2923 -0.5713 21 6 2.4010 5.4881 0.0096 22 1 1.4022 5.8844 -0.0981 23 6 3.3518 6.1907 0.7370 24 7 4.5693 5.7078 0.8679 25 14 2.9036 7.8215 1.5300 26 1 1.4836 8.1413 1.2357 27 1 3.0959 7.7267 2.9995 28 1 3.7751 8.8931 0.9848 29 6 1.8223 3.4461 -1.3678 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.4157 3.0670 3.6446 36 1 0.6209 -1.4784 3.5009 37 1 2.5142 -0.2711 7.1741 38 1 0.9568 -0.5914 7.9818 39 1 0.1199 1.6296 7.1371 40 1 1.5225 1.7933 8.2244 41 1 1.6368 3.1652 6.0590 42 1 3.0318 2.1056 6.3724 43 1 4.4882 1.5203 -0.7687 44 1 4.2930 2.4296 -2.3030 45 1 4.3101 3.4439 0.5340 46 1 4.7990 4.2782 -0.9673 47 1 5.2336 6.1987 1.3765 48 1 1.8124 3.7740 -2.4072 49 1 0.8154 3.4726 -0.9512 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034029932.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:37 Heat of formation + Delta-G solvation = 59.060618 kcal Electronic energy + Delta-G solvation = -32492.210666 eV Core-core repulsion = 28423.236425 eV Total energy + Delta-G solvation = -4068.974241 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.18293 -39.76352 -38.24421 -35.85469 -35.22854 -34.60732 -32.20546 -31.59813 -30.51212 -29.73304 -28.64910 -27.08184 -26.25383 -24.91978 -24.13901 -23.23852 -22.81001 -21.63947 -20.21797 -19.74678 -18.39890 -17.92321 -17.30146 -16.73202 -16.30151 -15.74560 -15.54025 -15.05782 -14.71365 -14.56060 -14.39899 -14.24178 -13.99897 -13.67483 -13.57090 -13.56398 -13.25842 -12.98274 -12.56588 -12.44141 -11.98413 -11.75038 -11.71991 -11.58520 -11.55858 -11.31376 -11.16656 -10.90341 -10.74824 -10.68150 -10.63836 -10.52005 -10.01167 -9.88572 -9.60390 -9.39898 -9.35320 -9.10772 -8.64334 -8.33708 -8.24751 -7.63546 -6.17255 -5.35490 -2.59344 0.96205 1.22657 2.98966 3.35440 3.54712 3.60334 3.61754 3.62250 4.25818 4.34070 4.37431 4.43378 4.54130 4.64139 4.77013 4.89078 5.09570 5.12262 5.23207 5.29376 5.46219 5.48915 5.54601 5.61455 5.68658 5.74515 5.78442 5.82310 5.87479 5.89549 5.99581 6.02215 6.08111 6.10200 6.24131 6.34565 6.37406 6.48260 6.66620 6.73812 6.74963 6.77937 6.88536 7.14011 7.50842 7.84244 7.88366 7.97250 8.17125 8.24844 8.61608 9.24475 9.57414 10.19554 10.86782 11.77942 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010249 B = 0.004668 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.316203 B = 5997.445902 C = 8109.968300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.105 3.895 3 N -0.597 5.597 4 C 0.514 3.486 5 O -0.397 6.397 6 C 0.061 3.939 7 C -0.074 4.074 8 C -0.128 4.128 9 C 0.088 3.912 10 C 0.065 3.935 11 N -0.419 5.419 12 O -0.310 6.310 13 C 0.059 3.941 14 C -0.159 4.159 15 C -0.082 4.082 16 C 0.133 3.867 17 H 0.081 0.919 18 C -0.161 4.161 19 C 0.192 3.808 20 N -0.566 5.566 21 C -0.183 4.183 22 H 0.066 0.934 23 C -0.010 4.010 24 N -0.922 5.922 25 Si 0.896 3.104 26 H -0.285 1.285 27 H -0.297 1.297 28 H -0.296 1.296 29 C 0.130 3.870 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.043 0.957 33 H 0.055 0.945 34 H 0.111 0.889 35 H 0.153 0.847 36 H 0.163 0.837 37 H 0.066 0.934 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.056 0.944 44 H 0.061 0.939 45 H 0.056 0.944 46 H 0.029 0.971 47 H 0.242 0.758 48 H 0.021 0.979 49 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.249 -16.519 8.886 19.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 N -0.334 5.334 4 C 0.296 3.704 5 O -0.261 6.261 6 C -0.076 4.076 7 C -0.094 4.094 8 C -0.137 4.137 9 C 0.040 3.960 10 C -0.096 4.096 11 N -0.132 5.132 12 O -0.222 6.222 13 C -0.016 4.016 14 C -0.197 4.197 15 C -0.119 4.119 16 C 0.029 3.971 17 H 0.099 0.901 18 C -0.200 4.200 19 C 0.068 3.932 20 N -0.291 5.291 21 C -0.312 4.312 22 H 0.084 0.916 23 C -0.204 4.204 24 N -0.573 5.573 25 Si 0.729 3.271 26 H -0.211 1.211 27 H -0.225 1.225 28 H -0.224 1.224 29 C 0.003 3.997 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.128 0.872 35 H 0.171 0.829 36 H 0.180 0.820 37 H 0.084 0.916 38 H 0.126 0.874 39 H 0.097 0.903 40 H 0.105 0.895 41 H 0.109 0.891 42 H 0.103 0.897 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.074 0.926 46 H 0.047 0.953 47 H 0.053 0.947 48 H 0.039 0.961 49 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -6.198 -16.176 8.245 19.184 hybrid contribution -0.082 1.279 1.496 1.970 sum -6.280 -14.897 9.741 18.874 Atomic orbital electron populations 1.22021 0.96888 1.00720 1.01269 1.21947 0.94062 0.82939 1.02926 1.47609 1.66164 1.13662 1.05916 1.18187 0.81910 0.87724 0.82573 1.91679 1.38810 1.11528 1.84054 1.21758 0.99627 0.90777 0.95448 1.21984 0.95655 1.01520 0.90255 1.20088 1.03120 0.93762 0.96712 1.19958 0.97244 0.90846 0.87938 1.22506 1.01438 1.00648 0.85038 1.68201 1.09243 1.08339 1.27435 1.85929 1.69232 1.53265 1.13821 1.23024 0.99239 0.94901 0.84411 1.22254 1.01979 0.95564 0.99905 1.20510 1.01298 0.99881 0.90176 1.22292 0.95477 0.94733 0.84642 0.90066 1.23396 0.94872 1.01105 1.00656 1.21079 0.87502 0.87043 0.97606 1.44131 1.06877 1.20261 1.57846 1.18839 0.95590 0.92934 1.23815 0.91583 1.24529 0.96191 0.98294 1.01392 1.69970 1.02773 1.38149 1.46377 0.86243 0.77040 0.84695 0.79108 1.21064 1.22462 1.22424 1.21761 0.94422 0.88856 0.94680 0.92829 0.92618 0.93814 0.92670 0.87212 0.82934 0.81977 0.91608 0.87355 0.90307 0.89452 0.89095 0.89713 0.92506 0.92081 0.92643 0.95255 0.94741 0.96123 0.94779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.60 37.16 0.36 -1.63 16 2 C 0.10 1.48 5.70 -4.04 -0.02 1.45 16 3 N -0.60 -10.69 2.58 -164.75 -0.42 -11.11 16 4 C 0.51 10.57 7.05 -12.29 -0.09 10.48 16 5 O -0.40 -9.95 8.29 5.32 0.04 -9.90 16 6 C 0.06 1.08 6.53 -83.02 -0.54 0.54 16 7 C -0.07 -1.24 9.30 -39.06 -0.36 -1.60 16 8 C -0.13 -1.76 5.75 -104.45 -0.60 -2.36 16 9 C 0.09 1.13 6.50 -38.93 -0.25 0.88 16 10 C 0.06 0.83 11.12 -17.29 -0.19 0.63 16 11 N -0.42 -6.21 4.40 -9.61 -0.04 -6.25 16 12 O -0.31 -3.44 10.29 -18.27 -0.19 -3.63 16 13 C 0.06 0.47 7.01 37.36 0.26 0.73 16 14 C -0.16 -1.28 6.19 -26.44 -0.16 -1.45 16 15 C -0.08 -0.87 5.91 -27.86 -0.16 -1.04 16 16 C 0.13 2.45 3.77 -65.78 -0.25 2.21 16 17 H 0.08 1.25 7.89 -51.93 -0.41 0.84 16 18 C -0.16 -3.20 6.52 -24.90 -0.16 -3.36 16 19 C 0.19 4.93 4.21 -3.06 -0.01 4.92 16 20 N -0.57 -15.03 1.73 -170.07 -0.29 -15.32 16 21 C -0.18 -5.34 8.75 -15.06 -0.13 -5.47 16 22 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 23 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 24 N -0.92 -28.33 10.31 55.49 0.57 -27.76 16 25 Si 0.90 23.39 29.55 -169.99 -5.02 18.36 16 26 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 27 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 28 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 29 C 0.13 2.87 6.19 -2.53 -0.02 2.86 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.84 6.85 -51.93 -0.36 0.48 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.69 7.90 -51.93 -0.41 0.28 16 34 H 0.11 1.57 5.16 -53.47 -0.28 1.29 16 35 H 0.15 2.87 7.66 -52.48 -0.40 2.47 16 36 H 0.16 1.60 8.06 -52.49 -0.42 1.18 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.06 1.60 5.82 -51.93 -0.30 1.30 16 46 H 0.03 0.84 7.50 -51.93 -0.39 0.45 16 47 H 0.24 7.29 8.31 -40.82 -0.34 6.95 16 48 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 374.77 15.07 5.65 5.65 Total: -1.00 -34.10 374.77 -9.73 -43.84 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -7.59 Total: -1.28 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: -2.44 Total: 7.41 kcal Atomic # 7 Polarization: -60.26 SS G_CDS: -0.19 Total: -60.45 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -0.14 Total: -13.53 kcal Atomic # 14 Polarization: 23.39 SS G_CDS: -5.02 Total: 18.36 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.10 -9.73 -43.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034029932.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.899 kcal (2) G-P(sol) polarization free energy of solvation -34.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds