Wall clock time and date at job start Wed Apr 1 2020 04:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.46680 * 2 1 4 4 C 1.34781 * 119.99788 * 82.74400 * 3 2 1 5 5 O 1.21551 * 119.99585 * 184.24620 * 4 3 2 6 6 C 1.47925 * 120.00163 * 4.24319 * 4 3 2 7 7 C 1.39470 * 119.71474 * 173.33941 * 6 4 3 8 8 C 1.38404 * 119.06540 * 179.97438 * 7 6 4 9 9 C 1.38697 * 118.72650 * 359.86296 * 8 7 6 10 10 C 1.39544 * 119.04024 * 0.21292 * 9 8 7 11 11 N 1.31299 * 120.84726 * 359.83341 * 10 9 8 12 12 O 1.35526 * 121.72435 * 180.28589 * 9 8 7 13 13 C 1.42877 * 117.75850 * 342.72164 * 12 9 8 14 14 C 1.53395 * 108.52880 * 49.23672 * 13 12 9 15 15 C 1.50583 * 119.60755 * 179.66835 * 8 7 6 16 16 C 1.46498 * 120.00112 * 262.73436 * 3 2 1 17 17 H 1.08998 * 110.88422 * 10.16795 * 16 3 2 18 18 C 1.55156 * 111.00733 * 246.28324 * 16 3 2 19 19 C 1.54328 * 102.94194 * 277.42893 * 18 16 3 20 20 N 1.47020 * 107.26943 * 337.80722 * 19 18 16 21 21 C 1.36945 * 125.65011 * 178.99126 * 20 19 18 22 22 H 1.07992 * 120.00178 * 179.97438 * 21 20 19 23 23 C 1.38807 * 119.99569 * 359.97202 * 21 20 19 24 24 N 1.31624 * 120.00135 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99905 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47034 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.46940 * 119.99938 * 25 23 21 28 28 H 1.48497 * 109.46958 * 239.99928 * 25 23 21 29 29 C 1.47428 * 108.70514 * 358.93917 * 20 19 18 30 30 H 1.09001 * 109.47028 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47253 * 299.99981 * 1 2 3 32 32 H 1.08997 * 109.47596 * 59.99814 * 1 2 3 33 33 H 1.08992 * 109.47432 * 239.99985 * 2 1 3 34 34 H 1.08998 * 109.47042 * 119.99662 * 2 1 3 35 35 H 1.08004 * 120.46495 * 359.96328 * 7 6 4 36 36 H 1.08001 * 119.58229 * 179.83255 * 10 9 8 37 37 H 1.09002 * 109.62641 * 289.52865 * 13 12 9 38 38 H 1.08998 * 109.62922 * 168.95291 * 13 12 9 39 39 H 1.08994 * 109.69062 * 55.03975 * 14 13 12 40 40 H 1.09003 * 109.69230 * 175.57249 * 14 13 12 41 41 H 1.08996 * 109.50451 * 42.53914 * 15 8 7 42 42 H 1.09000 * 109.46458 * 282.55491 * 15 8 7 43 43 H 1.09001 * 110.71954 * 35.79027 * 18 16 3 44 44 H 1.09000 * 110.72134 * 159.06584 * 18 16 3 45 45 H 1.08998 * 109.88401 * 97.22442 * 19 18 16 46 46 H 1.08999 * 109.87874 * 218.39113 * 19 18 16 47 47 H 0.97003 * 119.99876 * 180.02562 * 24 23 21 48 48 H 1.08997 * 110.36988 * 265.29008 * 29 20 19 49 49 H 1.09000 * 110.36342 * 142.96919 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1038 2.0658 1.1579 5 8 2.4350 3.2352 1.1495 6 6 1.7946 1.3938 2.4389 7 6 2.0182 2.0628 3.6421 8 6 1.7237 1.4216 4.8328 9 6 1.2122 0.1332 4.7873 10 6 1.0161 -0.4744 3.5465 11 7 1.3060 0.1590 2.4334 12 8 0.8973 -0.5488 5.9153 13 6 1.4414 -0.0796 7.1504 14 6 1.1849 1.4292 7.2541 15 6 1.9673 2.1297 6.1392 16 6 2.4136 2.0185 -1.2585 17 1 2.1208 1.4073 -2.1122 18 6 3.9374 2.3099 -1.2797 19 6 4.0456 3.6403 -0.5050 20 7 2.7295 4.2923 -0.5713 21 6 2.4010 5.4881 0.0096 22 1 1.4022 5.8844 -0.0981 23 6 3.3518 6.1907 0.7370 24 7 4.5693 5.7078 0.8679 25 14 2.9036 7.8215 1.5300 26 1 1.4836 8.1413 1.2357 27 1 3.0959 7.7267 2.9995 28 1 3.7751 8.8931 0.9848 29 6 1.8223 3.4461 -1.3678 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.4157 3.0670 3.6446 36 1 0.6209 -1.4784 3.5009 37 1 2.5142 -0.2711 7.1741 38 1 0.9568 -0.5914 7.9818 39 1 0.1199 1.6296 7.1371 40 1 1.5225 1.7933 8.2244 41 1 1.6368 3.1652 6.0590 42 1 3.0318 2.1056 6.3724 43 1 4.4882 1.5203 -0.7687 44 1 4.2930 2.4296 -2.3030 45 1 4.3101 3.4439 0.5340 46 1 4.7990 4.2782 -0.9673 47 1 5.2336 6.1987 1.3765 48 1 1.8124 3.7740 -2.4072 49 1 0.8154 3.4726 -0.9512 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034029932.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:36 Heat of formation + Delta-G solvation = 38.877328 kcal Electronic energy + Delta-G solvation = -32493.085879 eV Core-core repulsion = 28423.236425 eV Total energy + Delta-G solvation = -4069.849454 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.26717 -41.15009 -39.42545 -37.55804 -36.64804 -35.59222 -34.11254 -32.64834 -31.69585 -31.35311 -30.35194 -28.78153 -27.17607 -26.44682 -25.77991 -24.35949 -23.98057 -22.89414 -21.79577 -21.35283 -19.70136 -18.93224 -18.76952 -18.26871 -17.79491 -16.89285 -16.82083 -16.50733 -16.32826 -15.91840 -15.61869 -15.57815 -15.46713 -15.04803 -14.95131 -14.67905 -14.37349 -14.18927 -13.71850 -13.64243 -13.55092 -13.50180 -13.27346 -13.12056 -12.83691 -12.74151 -12.56243 -12.41862 -12.13498 -11.96617 -11.93861 -11.87013 -11.79573 -11.62981 -11.53707 -11.35398 -10.61754 -10.51662 -10.44789 -10.05257 -9.40490 -9.19557 -8.26954 -7.61357 -4.84047 -0.23849 0.10358 1.41356 1.42650 1.51673 2.00056 2.15564 2.28641 2.60452 2.92045 3.26519 3.44743 3.49285 3.56368 3.65891 3.83770 3.85810 3.94902 4.06038 4.10710 4.22058 4.26563 4.34997 4.44664 4.48942 4.53460 4.67873 4.71643 4.74245 4.74746 4.83937 4.85457 4.90077 4.94540 4.98205 5.02063 5.06786 5.11900 5.19095 5.20847 5.25329 5.41349 5.54982 5.68579 5.85177 6.02464 6.12342 6.19256 6.43129 6.68145 6.85037 7.34511 7.74561 8.05102 8.69884 9.50978 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010249 B = 0.004668 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.316203 B = 5997.445902 C = 8109.968300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.102 3.898 3 N -0.594 5.594 4 C 0.506 3.494 5 O -0.459 6.459 6 C 0.036 3.964 7 C -0.094 4.094 8 C -0.131 4.131 9 C 0.101 3.899 10 C 0.070 3.930 11 N -0.411 5.411 12 O -0.309 6.309 13 C 0.052 3.948 14 C -0.152 4.152 15 C -0.087 4.087 16 C 0.144 3.856 17 H 0.132 0.868 18 C -0.146 4.146 19 C 0.206 3.794 20 N -0.579 5.579 21 C -0.185 4.185 22 H 0.059 0.941 23 C -0.065 4.065 24 N -0.949 5.949 25 Si 0.955 3.045 26 H -0.275 1.275 27 H -0.301 1.301 28 H -0.295 1.295 29 C 0.126 3.874 30 H 0.083 0.917 31 H 0.031 0.969 32 H 0.040 0.960 33 H 0.084 0.916 34 H 0.111 0.889 35 H 0.115 0.885 36 H 0.201 0.799 37 H 0.074 0.926 38 H 0.143 0.857 39 H 0.074 0.926 40 H 0.116 0.884 41 H 0.080 0.920 42 H 0.091 0.909 43 H 0.066 0.934 44 H 0.085 0.915 45 H 0.014 0.986 46 H -0.014 1.014 47 H 0.233 0.767 48 H 0.036 0.964 49 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.953 -20.089 9.560 23.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.020 4.020 3 N -0.329 5.329 4 C 0.291 3.709 5 O -0.328 6.328 6 C -0.099 4.099 7 C -0.115 4.115 8 C -0.139 4.139 9 C 0.052 3.948 10 C -0.092 4.092 11 N -0.124 5.124 12 O -0.221 6.221 13 C -0.022 4.022 14 C -0.189 4.189 15 C -0.124 4.124 16 C 0.040 3.960 17 H 0.149 0.851 18 C -0.185 4.185 19 C 0.081 3.919 20 N -0.303 5.303 21 C -0.315 4.315 22 H 0.077 0.923 23 C -0.257 4.257 24 N -0.601 5.601 25 Si 0.787 3.213 26 H -0.200 1.200 27 H -0.229 1.229 28 H -0.223 1.223 29 C -0.001 4.001 30 H 0.101 0.899 31 H 0.050 0.950 32 H 0.059 0.941 33 H 0.103 0.897 34 H 0.129 0.871 35 H 0.134 0.866 36 H 0.218 0.782 37 H 0.093 0.907 38 H 0.161 0.839 39 H 0.093 0.907 40 H 0.134 0.866 41 H 0.099 0.901 42 H 0.109 0.891 43 H 0.085 0.915 44 H 0.104 0.896 45 H 0.032 0.968 46 H 0.004 0.996 47 H 0.043 0.957 48 H 0.053 0.947 49 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -7.942 -19.796 8.891 23.109 hybrid contribution 0.354 2.247 1.418 2.681 sum -7.589 -17.549 10.309 21.721 Atomic orbital electron populations 1.21935 0.95948 1.02189 0.99935 1.22190 0.94709 0.80659 1.04435 1.47770 1.65243 1.14973 1.04947 1.18677 0.80747 0.87418 0.84100 1.91639 1.41769 1.14106 1.85251 1.21311 1.02254 0.92249 0.94137 1.21775 0.97410 1.00447 0.91892 1.20312 1.02549 0.94422 0.96652 1.20013 0.95532 0.90166 0.89053 1.23131 0.99974 1.01662 0.84426 1.68169 1.08950 1.06835 1.28459 1.85945 1.69018 1.52943 1.14174 1.23410 1.00262 0.94885 0.83691 1.22254 1.01196 0.95581 0.99899 1.20623 1.02279 0.99517 0.89986 1.22294 0.93688 0.93467 0.86559 0.85082 1.23236 0.96532 0.97733 1.01008 1.20715 0.86271 0.89129 0.95809 1.44267 1.08112 1.20106 1.57817 1.19049 0.95064 0.94034 1.23378 0.92316 1.25198 0.96338 1.01548 1.02607 1.70212 1.03492 1.39150 1.47256 0.85302 0.77144 0.81097 0.77753 1.19960 1.22856 1.22296 1.21945 0.93148 0.90732 0.94238 0.89851 0.94984 0.94117 0.89728 0.87128 0.86649 0.78233 0.90734 0.83899 0.90720 0.86618 0.90138 0.89090 0.91498 0.89632 0.96776 0.99625 0.95735 0.94665 0.96161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 9.60 71.98 0.69 -2.64 16 2 C 0.10 2.58 5.70 86.38 0.49 3.07 16 3 N -0.59 -20.79 2.58 -793.42 -2.04 -22.83 16 4 C 0.51 21.73 7.05 86.81 0.61 22.34 16 5 O -0.46 -24.68 8.29 -3.87 -0.03 -24.71 16 6 C 0.04 1.32 6.53 41.86 0.27 1.60 16 7 C -0.09 -3.42 9.30 22.61 0.21 -3.21 16 8 C -0.13 -3.62 5.75 -19.75 -0.11 -3.74 16 9 C 0.10 2.40 6.50 22.69 0.15 2.55 16 10 C 0.07 1.62 11.12 85.09 0.95 2.56 16 11 N -0.41 -11.71 4.40 -184.33 -0.81 -12.52 16 12 O -0.31 -5.80 10.29 -88.29 -0.91 -6.71 16 13 C 0.05 0.63 7.01 72.11 0.51 1.13 16 14 C -0.15 -2.07 6.19 30.78 0.19 -1.88 16 15 C -0.09 -1.85 5.91 29.87 0.18 -1.68 16 16 C 0.14 5.08 3.77 46.38 0.17 5.26 16 17 H 0.13 3.40 7.89 -2.39 -0.02 3.39 16 18 C -0.15 -5.71 6.52 31.78 0.21 -5.51 16 19 C 0.21 11.13 4.21 86.73 0.37 11.50 16 20 N -0.58 -32.14 1.73 -691.99 -1.20 -33.34 16 21 C -0.18 -11.39 8.75 84.03 0.74 -10.65 16 22 H 0.06 3.59 7.83 -2.91 -0.02 3.57 16 23 C -0.07 -4.08 5.49 84.86 0.47 -3.61 16 24 N -0.95 -62.18 10.31 21.65 0.22 -61.96 16 25 Si 0.96 50.56 29.55 68.60 2.03 52.59 16 26 H -0.27 -13.87 7.11 99.48 0.71 -13.17 16 27 H -0.30 -15.93 7.11 99.48 0.71 -15.22 16 28 H -0.30 -15.44 7.11 99.48 0.71 -14.73 16 29 C 0.13 5.57 6.19 86.85 0.54 6.11 16 30 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.03 0.90 6.85 -2.39 -0.02 0.89 16 32 H 0.04 0.97 8.14 -2.39 -0.02 0.96 16 33 H 0.08 1.69 7.90 -2.39 -0.02 1.68 16 34 H 0.11 2.86 5.16 -5.42 -0.03 2.84 16 35 H 0.12 4.97 7.66 -2.91 -0.02 4.95 16 36 H 0.20 3.05 8.06 -2.91 -0.02 3.03 16 37 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.14 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 44 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 45 H 0.01 0.88 5.82 -2.39 -0.01 0.87 16 46 H -0.01 -0.88 7.50 -2.39 -0.02 -0.90 16 47 H 0.23 14.99 8.31 -92.71 -0.77 14.21 16 48 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 49 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -82.24 374.77 4.81 -77.43 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: 0.93 Total: 8.86 kcal Atomic # 6 Polarization: 16.58 SS G_CDS: 6.62 Total: 23.19 kcal Atomic # 7 Polarization: -126.82 SS G_CDS: -3.83 Total: -130.65 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -0.94 Total: -31.42 kcal Atomic # 14 Polarization: 50.56 SS G_CDS: 2.03 Total: 52.59 kcal Total: -82.24 4.81 -77.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034029932.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.312 kcal (2) G-P(sol) polarization free energy of solvation -82.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds