Wall clock time and date at job start Wed Apr 1 2020 04:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47131 * 2 1 4 4 C 1.34775 * 119.99961 * 103.04557 * 3 2 1 5 5 O 1.21555 * 120.00249 * 187.24226 * 4 3 2 6 6 C 1.47856 * 119.99819 * 7.24379 * 4 3 2 7 7 C 1.39622 * 120.11212 * 308.11850 * 6 4 3 8 8 C 1.37976 * 119.99306 * 179.97438 * 7 6 4 9 9 C 1.38252 * 120.22844 * 0.02562 * 8 7 6 10 10 C 1.38951 * 120.22164 * 0.02562 * 9 8 7 11 11 N 1.39958 * 119.99689 * 179.97438 * 10 9 8 12 12 C 1.34776 * 119.99533 * 144.53377 * 11 10 9 13 13 C 1.50706 * 119.99841 * 184.81132 * 12 11 10 14 14 O 1.21283 * 120.00394 * 4.81471 * 12 11 10 15 15 C 1.38634 * 119.99709 * 359.97438 * 10 9 8 16 16 C 1.46503 * 120.00247 * 283.05263 * 3 2 1 17 17 H 1.09003 * 110.88354 * 10.42354 * 16 3 2 18 18 C 1.55151 * 111.00279 * 246.54931 * 16 3 2 19 19 C 1.54324 * 102.94300 * 277.42543 * 18 16 3 20 20 N 1.47025 * 107.26637 * 337.80659 * 19 18 16 21 21 C 1.36946 * 125.64526 * 178.98623 * 20 19 18 22 22 H 1.07998 * 119.99877 * 179.97438 * 21 20 19 23 23 C 1.38812 * 119.99782 * 359.97438 * 21 20 19 24 24 N 1.31615 * 120.00255 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99697 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46933 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.46807 * 120.00272 * 25 23 21 28 28 H 1.48492 * 109.47218 * 240.00402 * 25 23 21 29 29 C 1.47416 * 108.70561 * 358.93921 * 20 19 18 30 30 H 1.09001 * 109.46812 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46950 * 299.99763 * 1 2 3 32 32 H 1.08995 * 109.47297 * 60.00094 * 1 2 3 33 33 H 1.08995 * 109.46950 * 240.00237 * 2 1 3 34 34 H 1.08997 * 109.47243 * 120.00454 * 2 1 3 35 35 H 1.07998 * 119.99793 * 0.25593 * 7 6 4 36 36 H 1.08007 * 119.88243 * 180.02562 * 8 7 6 37 37 H 1.08002 * 119.88971 * 179.97438 * 9 8 7 38 38 H 0.96995 * 120.00071 * 324.53432 * 11 10 9 39 39 H 1.09006 * 109.46452 * 90.00078 * 13 12 11 40 40 H 1.08992 * 109.47279 * 210.00078 * 13 12 11 41 41 H 1.08998 * 109.46771 * 330.00630 * 13 12 11 42 42 H 1.08008 * 120.10502 * 179.97438 * 15 10 9 43 43 H 1.09004 * 110.72481 * 35.78605 * 18 16 3 44 44 H 1.09000 * 110.72144 * 159.06113 * 18 16 3 45 45 H 1.08994 * 109.88256 * 97.22231 * 19 18 16 46 46 H 1.09002 * 109.88341 * 218.23710 * 19 18 16 47 47 H 0.97007 * 119.99872 * 180.02562 * 24 23 21 48 48 H 1.09002 * 110.37118 * 265.28897 * 29 20 19 49 49 H 1.09005 * 110.36770 * 142.96551 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4914 1.9287 1.1371 5 8 2.7731 3.1106 1.1712 6 6 2.6676 1.0916 2.3430 7 6 1.6126 0.3054 2.8103 8 6 1.7799 -0.4752 3.9356 9 6 2.9899 -0.4821 4.6044 10 6 4.0456 0.2976 4.1480 11 7 5.2683 0.2875 4.8290 12 6 6.4232 0.3892 4.1417 13 6 7.7417 0.2695 4.8618 14 8 6.4015 0.5769 2.9437 15 6 3.8877 1.0855 3.0183 16 6 1.9924 2.1674 -1.2359 17 1 1.4205 1.6556 -2.0100 18 6 3.4307 2.4832 -1.7244 19 6 3.8196 3.7154 -0.8805 20 7 2.5709 4.3499 -0.4335 21 6 2.4805 5.4642 0.3574 22 1 1.5116 5.8547 0.6315 23 6 3.6343 6.0918 0.8067 24 7 4.8150 5.6161 0.4723 25 14 3.5110 7.6122 1.8850 26 1 2.0814 7.9417 2.1144 27 1 4.1734 7.3500 3.1879 28 1 4.1803 8.7532 1.2102 29 6 1.4323 3.5885 -0.9785 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 0.6672 0.3049 2.2882 36 1 0.9627 -1.0831 4.2952 37 1 3.1147 -1.0949 5.4849 38 1 5.2845 0.2074 5.7955 39 1 8.0542 -0.7747 4.8764 40 1 8.4932 0.8666 4.3454 41 1 7.6310 0.6300 5.8845 42 1 4.7071 1.6925 2.6623 43 1 4.1002 1.6480 -1.5184 44 1 3.4324 2.7273 -2.7867 45 1 4.4065 3.4030 -0.0169 46 1 4.3961 4.4135 -1.4875 47 1 5.6213 6.0545 0.7866 48 1 1.0886 4.0356 -1.9113 49 1 0.6195 3.5502 -0.2532 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034043839.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:37 Heat of formation + Delta-G solvation = 47.715414 kcal Electronic energy + Delta-G solvation = -32416.261105 eV Core-core repulsion = 28346.794899 eV Total energy + Delta-G solvation = -4069.466206 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.59619 -39.74440 -38.12482 -35.92817 -35.29062 -34.53791 -32.10920 -30.94525 -30.75700 -29.89683 -28.69636 -28.48303 -27.03188 -24.41027 -23.61408 -22.87955 -22.61958 -20.86268 -20.49433 -19.71414 -18.60167 -17.26932 -17.00307 -16.38927 -16.35688 -16.03897 -15.59077 -15.42976 -14.72715 -14.38738 -14.26096 -13.88170 -13.82589 -13.53468 -13.44993 -13.38376 -12.97261 -12.86276 -12.71299 -12.28926 -12.11330 -11.92185 -11.70417 -11.61990 -11.57759 -11.34224 -11.32326 -11.05616 -10.64768 -10.62179 -10.51919 -10.28365 -9.86080 -9.83710 -9.75542 -9.58359 -9.31134 -8.83632 -8.47855 -8.19178 -8.08361 -7.69331 -6.12282 -5.29704 -2.53470 1.20737 1.48941 2.55564 2.99088 3.52472 3.59726 3.60377 3.64544 3.66957 4.08344 4.62371 4.82189 4.88336 4.95822 5.00657 5.12114 5.15760 5.17943 5.28519 5.37453 5.54283 5.56708 5.58012 5.66765 5.67797 5.75002 5.82964 5.86392 5.92269 6.03102 6.05513 6.16577 6.25654 6.35455 6.38828 6.45586 6.48795 6.66636 6.71577 6.74504 6.77039 6.90239 7.10899 7.31465 7.45389 7.88974 8.00884 8.07911 8.16304 8.25068 8.66818 9.27696 9.62185 10.24739 10.91500 11.83623 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008355 B = 0.005242 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3350.466725 B = 5340.444451 C = 7186.588823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.100 3.900 3 N -0.607 5.607 4 C 0.501 3.499 5 O -0.391 6.391 6 C -0.085 4.085 7 C -0.119 4.119 8 C -0.111 4.111 9 C -0.141 4.141 10 C 0.135 3.865 11 N -0.676 5.676 12 C 0.504 3.496 13 C -0.169 4.169 14 O -0.513 6.513 15 C -0.073 4.073 16 C 0.135 3.865 17 H 0.080 0.920 18 C -0.161 4.161 19 C 0.190 3.810 20 N -0.565 5.565 21 C -0.183 4.183 22 H 0.066 0.934 23 C -0.010 4.010 24 N -0.920 5.920 25 Si 0.897 3.103 26 H -0.285 1.285 27 H -0.297 1.297 28 H -0.296 1.296 29 C 0.132 3.868 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.131 0.869 36 H 0.126 0.874 37 H 0.122 0.878 38 H 0.409 0.591 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.081 0.919 42 H 0.147 0.853 43 H 0.057 0.943 44 H 0.061 0.939 45 H 0.054 0.946 46 H 0.030 0.970 47 H 0.242 0.758 48 H 0.021 0.979 49 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.990 -19.414 7.767 21.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.024 4.024 3 N -0.345 5.345 4 C 0.284 3.716 5 O -0.255 6.255 6 C -0.090 4.090 7 C -0.138 4.138 8 C -0.130 4.130 9 C -0.161 4.161 10 C 0.041 3.959 11 N -0.322 5.322 12 C 0.292 3.708 13 C -0.229 4.229 14 O -0.387 6.387 15 C -0.094 4.094 16 C 0.030 3.970 17 H 0.099 0.901 18 C -0.201 4.201 19 C 0.066 3.934 20 N -0.289 5.289 21 C -0.312 4.312 22 H 0.084 0.916 23 C -0.204 4.204 24 N -0.570 5.570 25 Si 0.730 3.270 26 H -0.210 1.210 27 H -0.225 1.225 28 H -0.224 1.224 29 C 0.004 3.996 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.148 0.852 36 H 0.144 0.856 37 H 0.140 0.860 38 H 0.245 0.755 39 H 0.113 0.887 40 H 0.116 0.884 41 H 0.099 0.901 42 H 0.165 0.835 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.072 0.928 46 H 0.049 0.951 47 H 0.053 0.947 48 H 0.039 0.961 49 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -2.594 -18.402 7.050 19.876 hybrid contribution -0.052 0.486 1.317 1.405 sum -2.646 -17.916 8.367 19.950 Atomic orbital electron populations 1.22277 0.96613 1.01456 1.02511 1.21609 0.93842 0.84043 1.02884 1.47728 1.65028 1.12685 1.09013 1.18660 0.80974 0.89031 0.82948 1.91693 1.41985 1.11296 1.80499 1.20286 0.94010 0.97078 0.97588 1.21507 0.98989 0.96328 0.96986 1.20787 0.96770 0.99846 0.95557 1.20887 0.93544 0.99874 1.01810 1.17627 0.85750 0.97321 0.95195 1.43572 1.04366 1.73715 1.10543 1.21039 0.85807 0.75869 0.88095 1.21873 0.94409 1.04951 1.01617 1.90823 1.87324 1.45497 1.15038 1.21344 0.97473 0.96385 0.94181 1.22251 0.97159 0.92738 0.84837 0.90148 1.23391 0.95822 1.00970 0.99911 1.21068 0.88783 0.88718 0.94881 1.44116 0.99203 1.29068 1.56561 1.18811 0.92076 0.98948 1.21408 0.91578 1.24559 0.95473 0.99122 1.01291 1.69964 0.96082 1.41020 1.49947 0.86222 0.76691 0.83459 0.80587 1.21045 1.22483 1.22434 1.21733 0.92329 0.89300 0.96193 0.92100 0.92360 0.92231 0.91723 0.89769 0.85168 0.85633 0.85968 0.75526 0.88671 0.88373 0.90051 0.83541 0.92422 0.92057 0.92827 0.95146 0.94708 0.96135 0.94773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.82 9.62 37.16 0.36 -1.47 16 2 C 0.10 1.30 5.59 -4.04 -0.02 1.28 16 3 N -0.61 -10.75 2.59 -164.78 -0.43 -11.18 16 4 C 0.50 10.62 6.62 -12.33 -0.08 10.54 16 5 O -0.39 -10.41 9.12 5.32 0.05 -10.36 16 6 C -0.09 -1.55 4.93 -104.99 -0.52 -2.07 16 7 C -0.12 -1.67 7.42 -39.16 -0.29 -1.96 16 8 C -0.11 -1.27 10.02 -39.67 -0.40 -1.67 16 9 C -0.14 -1.62 9.96 -39.31 -0.39 -2.01 16 10 C 0.13 1.95 6.29 -83.74 -0.53 1.42 16 11 N -0.68 -7.78 5.33 -9.89 -0.05 -7.84 16 12 C 0.50 6.69 7.78 -10.98 -0.09 6.60 16 13 C -0.17 -1.34 10.31 36.01 0.37 -0.97 16 14 O -0.51 -9.72 14.55 5.56 0.08 -9.64 16 15 C -0.07 -1.38 8.39 -38.98 -0.33 -1.71 16 16 C 0.13 2.50 3.72 -65.78 -0.24 2.25 16 17 H 0.08 1.22 7.99 -51.93 -0.41 0.80 16 18 C -0.16 -3.35 6.53 -24.90 -0.16 -3.51 16 19 C 0.19 5.10 4.23 -3.06 -0.01 5.09 16 20 N -0.56 -15.47 1.72 -170.07 -0.29 -15.76 16 21 C -0.18 -5.55 8.68 -15.05 -0.13 -5.68 16 22 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 23 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 24 N -0.92 -29.57 10.31 55.49 0.57 -29.00 16 25 Si 0.90 24.34 29.55 -169.99 -5.02 19.31 16 26 H -0.28 -7.50 7.11 56.52 0.40 -7.10 16 27 H -0.30 -8.17 7.11 56.52 0.40 -7.77 16 28 H -0.30 -8.01 7.11 56.52 0.40 -7.61 16 29 C 0.13 2.95 6.14 -2.54 -0.02 2.93 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.66 6.33 -51.93 -0.33 0.34 16 32 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 1.08 4.90 -51.93 -0.25 0.83 16 35 H 0.13 1.63 4.80 -52.49 -0.25 1.38 16 36 H 0.13 1.04 8.06 -52.48 -0.42 0.61 16 37 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.41 2.95 8.82 -40.82 -0.36 2.59 16 39 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.15 3.36 6.24 -52.48 -0.33 3.04 16 43 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.05 1.65 5.96 -51.93 -0.31 1.34 16 46 H 0.03 0.91 7.50 -51.93 -0.39 0.52 16 47 H 0.24 7.65 8.31 -40.82 -0.34 7.31 16 48 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 382.41 15.07 5.76 5.76 Total: -1.00 -39.35 382.41 -9.16 -48.51 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -7.26 Total: 1.50 kcal Atomic # 6 Polarization: 11.27 SS G_CDS: -2.57 Total: 8.70 kcal Atomic # 7 Polarization: -63.58 SS G_CDS: -0.20 Total: -63.78 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: 0.13 Total: -20.00 kcal Atomic # 14 Polarization: 24.34 SS G_CDS: -5.02 Total: 19.31 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -39.35 -9.16 -48.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034043839.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.224 kcal (2) G-P(sol) polarization free energy of solvation -39.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds