Wall clock time and date at job start Wed Apr 1 2020 04:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47131 * 2 1 4 4 C 1.34775 * 119.99961 * 103.04557 * 3 2 1 5 5 O 1.21555 * 120.00249 * 187.24226 * 4 3 2 6 6 C 1.47856 * 119.99819 * 7.24379 * 4 3 2 7 7 C 1.39622 * 120.11212 * 308.11850 * 6 4 3 8 8 C 1.37976 * 119.99306 * 179.97438 * 7 6 4 9 9 C 1.38252 * 120.22844 * 0.02562 * 8 7 6 10 10 C 1.38951 * 120.22164 * 0.02562 * 9 8 7 11 11 N 1.39958 * 119.99689 * 179.97438 * 10 9 8 12 12 C 1.34776 * 119.99533 * 144.53377 * 11 10 9 13 13 C 1.50706 * 119.99841 * 184.81132 * 12 11 10 14 14 O 1.21283 * 120.00394 * 4.81471 * 12 11 10 15 15 C 1.38634 * 119.99709 * 359.97438 * 10 9 8 16 16 C 1.46503 * 120.00247 * 283.05263 * 3 2 1 17 17 H 1.09003 * 110.88354 * 10.42354 * 16 3 2 18 18 C 1.55151 * 111.00279 * 246.54931 * 16 3 2 19 19 C 1.54324 * 102.94300 * 277.42543 * 18 16 3 20 20 N 1.47025 * 107.26637 * 337.80659 * 19 18 16 21 21 C 1.36946 * 125.64526 * 178.98623 * 20 19 18 22 22 H 1.07998 * 119.99877 * 179.97438 * 21 20 19 23 23 C 1.38812 * 119.99782 * 359.97438 * 21 20 19 24 24 N 1.31615 * 120.00255 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99697 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46933 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.46807 * 120.00272 * 25 23 21 28 28 H 1.48492 * 109.47218 * 240.00402 * 25 23 21 29 29 C 1.47416 * 108.70561 * 358.93921 * 20 19 18 30 30 H 1.09001 * 109.46812 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46950 * 299.99763 * 1 2 3 32 32 H 1.08995 * 109.47297 * 60.00094 * 1 2 3 33 33 H 1.08995 * 109.46950 * 240.00237 * 2 1 3 34 34 H 1.08997 * 109.47243 * 120.00454 * 2 1 3 35 35 H 1.07998 * 119.99793 * 0.25593 * 7 6 4 36 36 H 1.08007 * 119.88243 * 180.02562 * 8 7 6 37 37 H 1.08002 * 119.88971 * 179.97438 * 9 8 7 38 38 H 0.96995 * 120.00071 * 324.53432 * 11 10 9 39 39 H 1.09006 * 109.46452 * 90.00078 * 13 12 11 40 40 H 1.08992 * 109.47279 * 210.00078 * 13 12 11 41 41 H 1.08998 * 109.46771 * 330.00630 * 13 12 11 42 42 H 1.08008 * 120.10502 * 179.97438 * 15 10 9 43 43 H 1.09004 * 110.72481 * 35.78605 * 18 16 3 44 44 H 1.09000 * 110.72144 * 159.06113 * 18 16 3 45 45 H 1.08994 * 109.88256 * 97.22231 * 19 18 16 46 46 H 1.09002 * 109.88341 * 218.23710 * 19 18 16 47 47 H 0.97007 * 119.99872 * 180.02562 * 24 23 21 48 48 H 1.09002 * 110.37118 * 265.28897 * 29 20 19 49 49 H 1.09005 * 110.36770 * 142.96551 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4914 1.9287 1.1371 5 8 2.7731 3.1106 1.1712 6 6 2.6676 1.0916 2.3430 7 6 1.6126 0.3054 2.8103 8 6 1.7799 -0.4752 3.9356 9 6 2.9899 -0.4821 4.6044 10 6 4.0456 0.2976 4.1480 11 7 5.2683 0.2875 4.8290 12 6 6.4232 0.3892 4.1417 13 6 7.7417 0.2695 4.8618 14 8 6.4015 0.5769 2.9437 15 6 3.8877 1.0855 3.0183 16 6 1.9924 2.1674 -1.2359 17 1 1.4205 1.6556 -2.0100 18 6 3.4307 2.4832 -1.7244 19 6 3.8196 3.7154 -0.8805 20 7 2.5709 4.3499 -0.4335 21 6 2.4805 5.4642 0.3574 22 1 1.5116 5.8547 0.6315 23 6 3.6343 6.0918 0.8067 24 7 4.8150 5.6161 0.4723 25 14 3.5110 7.6122 1.8850 26 1 2.0814 7.9417 2.1144 27 1 4.1734 7.3500 3.1879 28 1 4.1803 8.7532 1.2102 29 6 1.4323 3.5885 -0.9785 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 0.6672 0.3049 2.2882 36 1 0.9627 -1.0831 4.2952 37 1 3.1147 -1.0949 5.4849 38 1 5.2845 0.2074 5.7955 39 1 8.0542 -0.7747 4.8764 40 1 8.4932 0.8666 4.3454 41 1 7.6310 0.6300 5.8845 42 1 4.7071 1.6925 2.6623 43 1 4.1002 1.6480 -1.5184 44 1 3.4324 2.7273 -2.7867 45 1 4.4065 3.4030 -0.0169 46 1 4.3961 4.4135 -1.4875 47 1 5.6213 6.0545 0.7866 48 1 1.0886 4.0356 -1.9113 49 1 0.6195 3.5502 -0.2532 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034043839.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:35 Heat of formation + Delta-G solvation = 19.221772 kcal Electronic energy + Delta-G solvation = -32417.496682 eV Core-core repulsion = 28346.794899 eV Total energy + Delta-G solvation = -4070.701783 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.81641 -41.13615 -39.39730 -37.66431 -36.73589 -35.75474 -34.13020 -32.01629 -31.88925 -31.42350 -30.46728 -29.46583 -28.81467 -26.44689 -25.07933 -23.94693 -23.69826 -22.35657 -21.81830 -21.55159 -19.96371 -18.92137 -18.23611 -18.03195 -17.49228 -17.41615 -16.98495 -16.65866 -16.51617 -16.03760 -15.69947 -15.60316 -15.11494 -14.96447 -14.74828 -14.45386 -14.33546 -13.91493 -13.69965 -13.54029 -13.47052 -13.41855 -13.27818 -13.08812 -12.88382 -12.80217 -12.77259 -12.60748 -12.46219 -12.23521 -11.99885 -11.96965 -11.73739 -11.60474 -11.48218 -11.33766 -10.93664 -10.59030 -10.26313 -9.80445 -9.29629 -9.16515 -8.31046 -7.64674 -4.87552 0.08498 0.33841 1.36100 1.39889 1.48319 1.52988 1.99245 2.15187 2.28559 2.57633 2.85031 3.53375 3.63654 3.79413 3.83050 3.97103 4.01383 4.11423 4.13159 4.19869 4.29891 4.35101 4.39536 4.49613 4.53556 4.58816 4.61893 4.63534 4.70678 4.84021 4.87694 4.93257 5.00459 5.04237 5.06965 5.10549 5.15026 5.28452 5.31542 5.43644 5.48037 5.50648 5.55392 5.76828 5.94992 5.99254 6.03656 6.38127 6.40839 6.72992 7.13998 7.29211 7.73942 8.01486 8.66356 9.47883 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008355 B = 0.005242 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3350.466725 B = 5340.444451 C = 7186.588823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.094 3.906 3 N -0.603 5.603 4 C 0.493 3.507 5 O -0.465 6.465 6 C -0.114 4.114 7 C -0.114 4.114 8 C -0.094 4.094 9 C -0.119 4.119 10 C 0.126 3.874 11 N -0.660 5.660 12 C 0.492 3.508 13 C -0.158 4.158 14 O -0.583 6.583 15 C -0.112 4.112 16 C 0.148 3.852 17 H 0.136 0.864 18 C -0.149 4.149 19 C 0.206 3.794 20 N -0.577 5.577 21 C -0.181 4.181 22 H 0.064 0.936 23 C -0.076 4.076 24 N -0.953 5.953 25 Si 0.960 3.040 26 H -0.268 1.268 27 H -0.307 1.307 28 H -0.293 1.293 29 C 0.128 3.872 30 H 0.094 0.906 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.148 0.852 36 H 0.177 0.823 37 H 0.172 0.828 38 H 0.432 0.568 39 H 0.124 0.876 40 H 0.085 0.915 41 H 0.116 0.884 42 H 0.083 0.917 43 H 0.058 0.942 44 H 0.088 0.912 45 H 0.001 0.999 46 H -0.015 1.015 47 H 0.230 0.770 48 H 0.038 0.962 49 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.120 -23.442 9.535 26.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.028 4.028 3 N -0.339 5.339 4 C 0.278 3.722 5 O -0.335 6.335 6 C -0.118 4.118 7 C -0.132 4.132 8 C -0.112 4.112 9 C -0.139 4.139 10 C 0.031 3.969 11 N -0.309 5.309 12 C 0.283 3.717 13 C -0.216 4.216 14 O -0.462 6.462 15 C -0.133 4.133 16 C 0.043 3.957 17 H 0.153 0.847 18 C -0.188 4.188 19 C 0.081 3.919 20 N -0.301 5.301 21 C -0.311 4.311 22 H 0.082 0.918 23 C -0.267 4.267 24 N -0.605 5.605 25 Si 0.791 3.209 26 H -0.192 1.192 27 H -0.235 1.235 28 H -0.220 1.220 29 C 0.002 3.998 30 H 0.113 0.887 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.166 0.834 36 H 0.194 0.806 37 H 0.190 0.810 38 H 0.273 0.727 39 H 0.142 0.858 40 H 0.104 0.896 41 H 0.135 0.865 42 H 0.102 0.898 43 H 0.077 0.923 44 H 0.106 0.894 45 H 0.019 0.981 46 H 0.003 0.997 47 H 0.040 0.960 48 H 0.056 0.944 49 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -5.797 -22.504 8.845 24.865 hybrid contribution 0.862 1.587 0.836 1.990 sum -4.936 -20.917 9.681 23.571 Atomic orbital electron populations 1.22209 0.94080 1.03540 1.02142 1.21942 0.95725 0.81070 1.04033 1.47839 1.63962 1.14451 1.07695 1.19312 0.79576 0.88730 0.84557 1.91634 1.45077 1.14469 1.82324 1.20097 0.95376 0.99082 0.97212 1.21696 0.98004 0.95561 0.97965 1.21376 0.97914 0.98330 0.93553 1.21418 0.91982 0.98101 1.02384 1.17818 0.87749 0.97070 0.94221 1.43523 1.03232 1.72498 1.11600 1.22126 0.87833 0.74189 0.87562 1.21908 0.90608 1.06714 1.02418 1.90815 1.88336 1.48680 1.18381 1.21008 0.96522 0.98492 0.97255 1.22224 0.95467 0.91602 0.86386 0.84670 1.23239 0.97514 0.97864 1.00193 1.20634 0.88226 0.90028 0.93015 1.44247 1.00929 1.28869 1.56055 1.19089 0.91762 0.99456 1.20788 0.91783 1.25333 0.95314 1.02513 1.03497 1.70251 0.96354 1.42370 1.51545 0.85219 0.77279 0.80113 0.78252 1.19207 1.23503 1.22039 1.21943 0.90676 0.91159 0.96061 0.88701 0.93215 0.92142 0.89719 0.89591 0.83431 0.80584 0.81040 0.72741 0.85819 0.89644 0.86507 0.89833 0.92292 0.89377 0.98103 0.99713 0.96026 0.94412 0.95468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 9.62 71.98 0.69 -2.09 16 2 C 0.09 2.19 5.59 86.38 0.48 2.67 16 3 N -0.60 -21.24 2.59 -793.51 -2.05 -23.29 16 4 C 0.49 22.15 6.62 86.79 0.57 22.72 16 5 O -0.47 -26.96 9.12 -3.89 -0.04 -27.00 16 6 C -0.11 -4.31 4.93 -20.10 -0.10 -4.40 16 7 C -0.11 -2.93 7.42 22.54 0.17 -2.76 16 8 C -0.09 -1.69 10.02 22.21 0.22 -1.47 16 9 C -0.12 -2.24 9.96 22.44 0.22 -2.02 16 10 C 0.13 3.61 6.29 38.11 0.24 3.85 16 11 N -0.66 -14.92 5.33 -303.60 -1.62 -16.54 16 12 C 0.49 13.74 7.78 87.66 0.68 14.43 16 13 C -0.16 -2.38 10.31 71.24 0.73 -1.65 16 14 O -0.58 -24.67 14.55 -3.04 -0.04 -24.71 16 15 C -0.11 -4.56 8.39 22.66 0.19 -4.37 16 16 C 0.15 5.33 3.72 46.38 0.17 5.50 16 17 H 0.14 3.50 7.99 -2.39 -0.02 3.48 16 18 C -0.15 -6.30 6.53 31.78 0.21 -6.10 16 19 C 0.21 12.00 4.23 86.73 0.37 12.37 16 20 N -0.58 -33.46 1.72 -691.99 -1.19 -34.65 16 21 C -0.18 -11.57 8.68 84.03 0.73 -10.84 16 22 H 0.06 4.01 7.83 -2.91 -0.02 3.98 16 23 C -0.08 -4.98 5.49 84.86 0.47 -4.51 16 24 N -0.95 -66.73 10.31 21.65 0.22 -66.50 16 25 Si 0.96 53.08 29.55 68.60 2.03 55.11 16 26 H -0.27 -13.83 7.11 99.48 0.71 -13.12 16 27 H -0.31 -17.24 7.11 99.48 0.71 -16.54 16 28 H -0.29 -15.84 7.11 99.48 0.71 -15.14 16 29 C 0.13 5.74 6.14 86.86 0.53 6.28 16 30 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.05 0.96 6.33 -2.39 -0.02 0.94 16 32 H 0.06 1.06 8.12 -2.39 -0.02 1.04 16 33 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.09 2.01 4.90 -2.39 -0.01 2.00 16 35 H 0.15 3.22 4.80 -2.91 -0.01 3.21 16 36 H 0.18 1.54 8.06 -2.91 -0.02 1.52 16 37 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 38 H 0.43 5.18 8.82 -92.71 -0.82 4.36 16 39 H 0.12 1.19 8.14 -2.38 -0.02 1.17 16 40 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.08 4.46 6.24 -2.91 -0.02 4.44 16 43 H 0.06 2.46 8.14 -2.38 -0.02 2.44 16 44 H 0.09 3.25 8.14 -2.39 -0.02 3.24 16 45 H 0.00 0.06 5.96 -2.39 -0.01 0.04 16 46 H -0.02 -0.99 7.50 -2.39 -0.02 -1.01 16 47 H 0.23 15.89 8.31 -92.70 -0.77 15.12 16 48 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 49 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 Total: -1.00 -103.36 382.41 4.05 -99.31 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 0.16 Total: 10.68 kcal Atomic # 6 Polarization: 21.02 SS G_CDS: 6.58 Total: 27.60 kcal Atomic # 7 Polarization: -136.34 SS G_CDS: -4.64 Total: -140.98 kcal Atomic # 8 Polarization: -51.64 SS G_CDS: -0.08 Total: -51.71 kcal Atomic # 14 Polarization: 53.08 SS G_CDS: 2.03 Total: 55.11 kcal Total: -103.36 4.05 -99.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034043839.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.528 kcal (2) G-P(sol) polarization free energy of solvation -103.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds