Wall clock time and date at job start Wed Apr 1 2020 05:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42894 * 109.47125 * 2 1 4 4 C 1.35686 * 117.00243 * 180.02562 * 3 2 1 5 5 C 1.38891 * 119.62875 * 180.02562 * 4 3 2 6 6 C 1.39571 * 118.94960 * 180.02562 * 5 4 3 7 7 C 1.48156 * 120.89125 * 179.97438 * 6 5 4 8 8 O 1.21515 * 119.99919 * 138.42593 * 7 6 5 9 9 N 1.34779 * 120.00117 * 318.42482 * 7 6 5 10 10 C 1.46894 * 120.46080 * 184.06440 * 9 7 6 11 11 C 1.53354 * 108.74101 * 124.38976 * 10 9 7 12 12 C 1.52547 * 109.13184 * 52.25524 * 11 10 9 13 13 C 1.52961 * 114.06179 * 75.54453 * 12 11 10 14 14 N 1.47162 * 87.85452 * 139.44118 * 13 12 11 15 15 C 1.36938 * 135.99859 * 153.33378 * 14 13 12 16 16 H 1.07997 * 120.00266 * 353.31929 * 15 14 13 17 17 C 1.38816 * 119.99483 * 173.31695 * 15 14 13 18 18 N 1.31619 * 120.00108 * 353.55875 * 17 15 14 19 19 Si 1.86801 * 119.99717 * 173.56311 * 17 15 14 20 20 H 1.48500 * 109.47205 * 94.98615 * 19 17 15 21 21 H 1.48501 * 109.47252 * 214.97973 * 19 17 15 22 22 H 1.48500 * 109.47355 * 334.98452 * 19 17 15 23 23 C 1.47162 * 87.99625 * 333.33858 * 14 13 12 24 24 C 1.52554 * 113.43238 * 302.67122 * 12 11 10 25 25 C 1.46881 * 120.46408 * 4.08584 * 9 7 6 26 26 C 1.39973 * 118.21450 * 0.26891 * 6 5 4 27 27 C 1.37972 * 119.13367 * 359.48207 * 26 6 5 28 28 N 1.31916 * 120.98035 * 0.53455 * 27 26 6 29 29 H 1.09003 * 109.47262 * 299.99998 * 1 2 3 30 30 H 1.09005 * 109.47170 * 59.99649 * 1 2 3 31 31 H 1.09001 * 109.47227 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.46912 * 240.00278 * 2 1 3 33 33 H 1.08996 * 109.47091 * 120.00573 * 2 1 3 34 34 H 1.08002 * 120.52585 * 359.97287 * 5 4 3 35 35 H 1.08997 * 109.59550 * 4.60635 * 10 9 7 36 36 H 1.09004 * 109.71541 * 244.23708 * 10 9 7 37 37 H 1.09006 * 109.52292 * 292.35781 * 11 10 9 38 38 H 1.09008 * 109.58477 * 172.19115 * 11 10 9 39 39 H 1.08999 * 113.48835 * 24.69317 * 13 12 11 40 40 H 1.09000 * 113.48653 * 254.19083 * 13 12 11 41 41 H 0.97000 * 119.99640 * 180.02562 * 18 17 15 42 42 H 1.09003 * 113.49323 * 141.41719 * 23 14 13 43 43 H 1.08999 * 113.48899 * 271.91495 * 23 14 13 44 44 H 1.08997 * 109.52734 * 177.20752 * 24 12 11 45 45 H 1.08999 * 109.52930 * 297.42199 * 24 12 11 46 46 H 1.09002 * 109.58965 * 355.38216 * 25 9 7 47 47 H 1.08993 * 109.59314 * 115.82125 * 25 9 7 48 48 H 1.07996 * 120.43083 * 179.73035 * 26 6 5 49 49 H 1.08003 * 119.51212 * 180.27272 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3515 1.5251 -0.0005 5 6 3.8740 2.8119 0.0000 6 6 5.2597 2.9785 -0.0011 7 6 5.8632 4.3315 -0.0012 8 8 6.8303 4.5655 0.6964 9 7 5.3397 5.3029 -0.7750 10 6 5.9821 6.6217 -0.8512 11 6 6.2817 6.9397 -2.3212 12 6 5.0076 6.7614 -3.1409 13 6 3.9937 7.8942 -2.9721 14 7 3.7422 7.8105 -4.4197 15 6 2.6960 8.0960 -5.2558 16 1 1.7395 8.3838 -4.8452 17 6 2.8651 8.0154 -6.6313 18 7 4.0597 7.7894 -7.1355 19 14 1.3970 8.2280 -7.7667 20 1 1.3187 9.6415 -8.2152 21 1 1.5525 7.3418 -8.9481 22 1 0.1528 7.8698 -7.0395 23 6 5.1082 7.2852 -4.5743 24 6 4.4045 5.3646 -3.0287 25 6 4.1185 5.0578 -1.5536 26 6 6.0639 1.8328 -0.0085 27 6 5.4634 0.5906 -0.0035 28 7 4.1497 0.4715 -0.0024 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.2183 3.6702 0.0004 35 1 6.9122 6.6086 -0.2831 36 1 5.3146 7.3801 -0.4418 37 1 7.0509 6.2618 -2.6911 38 1 6.6303 7.9689 -2.4087 39 1 4.4437 8.8376 -2.6632 40 1 3.1316 7.6186 -2.3647 41 1 4.1778 7.7335 -8.0966 42 1 5.1880 6.4951 -5.3209 43 1 5.8611 8.0632 -4.7007 44 1 3.4750 5.3224 -3.5964 45 1 5.1076 4.6314 -3.4238 46 1 3.8213 4.0144 -1.4483 47 1 3.3194 5.7057 -1.1937 48 1 7.1403 1.9201 -0.0140 49 1 6.0781 -0.2974 -0.0047 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035789914.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:34 Heat of formation + Delta-G solvation = 36.958170 kcal Electronic energy + Delta-G solvation = -30751.593128 eV Core-core repulsion = 26681.660453 eV Total energy + Delta-G solvation = -4069.932675 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.28706 -40.17336 -38.95341 -37.99921 -35.94051 -33.41537 -32.41168 -32.35591 -30.97359 -30.42795 -30.11459 -27.11679 -25.52505 -24.81792 -24.03232 -23.68081 -22.97672 -22.67051 -21.30653 -20.17562 -18.70538 -17.51958 -17.21450 -16.70357 -16.65649 -16.49628 -16.30756 -15.73417 -15.20843 -14.88187 -14.71855 -14.50991 -14.18885 -14.17744 -13.83584 -13.62237 -13.59705 -13.16867 -12.93452 -12.63756 -12.62651 -12.29503 -12.26516 -12.10955 -11.82042 -11.71854 -11.17344 -11.06208 -11.01588 -10.90637 -10.86998 -10.49015 -10.43139 -10.33419 -10.08761 -9.78418 -9.64488 -9.60005 -9.23705 -8.79967 -8.74654 -8.52475 -6.88264 -5.80032 -3.10448 0.53831 0.86390 2.52072 2.67646 2.94528 3.37050 3.42454 3.44516 3.49538 3.95380 4.21815 4.44356 4.62840 4.69723 4.72525 4.77526 4.83552 4.96015 4.99234 5.07813 5.10182 5.26668 5.29179 5.35145 5.37837 5.43510 5.50165 5.54374 5.59388 5.61980 5.74917 5.78281 5.78999 5.83691 5.93531 6.01852 6.11596 6.23675 6.31889 6.44450 6.54862 6.59233 6.76847 6.78363 6.95301 7.18608 7.30848 7.32578 7.50131 7.51816 7.95301 7.97923 9.01991 9.68781 10.64522 11.38634 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009994 B = 0.003119 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2801.083966 B = 8975.101890 C =11045.398127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.067 3.933 3 O -0.304 6.304 4 C 0.323 3.677 5 C -0.167 4.167 6 C -0.041 4.041 7 C 0.559 3.441 8 O -0.535 6.535 9 N -0.591 5.591 10 C 0.115 3.885 11 C -0.114 4.114 12 C -0.117 4.117 13 C 0.126 3.874 14 N -0.607 5.607 15 C -0.218 4.218 16 H 0.080 0.920 17 C -0.007 4.007 18 N -0.918 5.918 19 Si 0.910 3.090 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.280 1.280 23 C 0.174 3.826 24 C -0.094 4.094 25 C 0.084 3.916 26 C -0.162 4.162 27 C 0.140 3.860 28 N -0.530 5.530 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.156 0.844 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.077 0.923 39 H 0.030 0.970 40 H 0.036 0.964 41 H 0.253 0.747 42 H 0.058 0.942 43 H 0.028 0.972 44 H 0.089 0.911 45 H 0.060 0.940 46 H 0.098 0.902 47 H 0.077 0.923 48 H 0.146 0.854 49 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.408 -14.833 16.013 21.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.008 4.008 3 O -0.211 6.211 4 C 0.144 3.856 5 C -0.188 4.188 6 C -0.052 4.052 7 C 0.346 3.654 8 O -0.413 6.413 9 N -0.323 5.323 10 C -0.007 4.007 11 C -0.152 4.152 12 C -0.118 4.118 13 C 0.000 4.000 14 N -0.332 5.332 15 C -0.346 4.346 16 H 0.098 0.902 17 C -0.204 4.204 18 N -0.565 5.565 19 Si 0.740 3.260 20 H -0.217 1.217 21 H -0.216 1.216 22 H -0.205 1.205 23 C 0.048 3.952 24 C -0.132 4.132 25 C -0.038 4.038 26 C -0.183 4.183 27 C -0.016 4.016 28 N -0.255 5.255 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.174 0.826 35 H 0.108 0.892 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.048 0.952 40 H 0.055 0.945 41 H 0.063 0.937 42 H 0.076 0.924 43 H 0.046 0.954 44 H 0.108 0.892 45 H 0.079 0.921 46 H 0.115 0.885 47 H 0.095 0.905 48 H 0.164 0.836 49 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 0.105 -15.264 16.033 22.137 hybrid contribution -0.319 0.943 -0.901 1.343 sum -0.214 -14.320 15.132 20.835 Atomic orbital electron populations 1.21836 0.92880 1.02931 1.03565 1.22629 0.94863 0.80804 1.02528 1.86259 1.16389 1.30921 1.87553 1.19609 0.84292 0.89421 0.92299 1.21409 0.94655 0.96681 1.06046 1.20133 0.92841 0.94624 0.97567 1.18127 0.83261 0.83717 0.80276 1.90778 1.27077 1.81871 1.41558 1.48037 1.27346 1.12695 1.44194 1.21700 0.98633 0.82454 0.97891 1.21735 0.97956 1.02041 0.93512 1.22090 0.94961 0.95174 0.99623 1.22402 0.94782 0.94403 0.88414 1.45672 1.11197 1.74994 1.01364 1.18929 0.88558 1.40428 0.86664 0.90229 1.24808 0.96714 1.02344 0.96484 1.69852 1.20216 1.55178 1.11269 0.86143 0.81741 0.77513 0.80624 1.21670 1.21628 1.20514 1.21907 0.87081 0.95423 0.90763 1.21424 1.02349 0.95469 0.93984 1.22545 0.85925 1.02797 0.92541 1.22030 1.01795 0.91731 1.02761 1.22390 0.88919 0.97185 0.93086 1.67216 1.06855 1.33277 1.18135 0.91614 0.91374 0.90282 0.91453 0.91630 0.82644 0.89226 0.91031 0.91749 0.90467 0.95231 0.94537 0.93680 0.92405 0.95398 0.89223 0.92094 0.88477 0.90511 0.83594 0.81622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.03 10.28 37.16 0.38 -0.65 16 2 C 0.07 0.58 6.03 37.16 0.22 0.80 16 3 O -0.30 -3.40 10.11 -18.76 -0.19 -3.59 16 4 C 0.32 3.75 7.49 -17.16 -0.13 3.63 16 5 C -0.17 -1.90 7.39 -38.84 -0.29 -2.19 16 6 C -0.04 -0.49 5.35 -104.68 -0.56 -1.05 16 7 C 0.56 7.79 7.39 -12.19 -0.09 7.70 16 8 O -0.54 -8.84 16.38 5.35 0.09 -8.75 16 9 N -0.59 -7.84 2.94 -173.63 -0.51 -8.35 16 10 C 0.11 1.50 6.34 -3.64 -0.02 1.48 16 11 C -0.11 -1.63 5.30 -26.78 -0.14 -1.77 16 12 C -0.12 -2.02 0.84 -155.02 -0.13 -2.15 16 13 C 0.13 2.45 7.63 -8.22 -0.06 2.39 16 14 N -0.61 -15.02 3.53 -184.70 -0.65 -15.67 16 15 C -0.22 -5.99 10.73 -15.06 -0.16 -6.15 16 16 H 0.08 2.11 7.84 -52.49 -0.41 1.70 16 17 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 18 N -0.92 -27.04 11.83 55.49 0.66 -26.38 16 19 Si 0.91 21.85 29.56 -169.99 -5.02 16.83 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 23 C 0.17 3.94 6.36 -8.23 -0.05 3.89 16 24 C -0.09 -1.49 5.27 -26.77 -0.14 -1.63 16 25 C 0.08 1.07 5.13 -3.65 -0.02 1.05 16 26 C -0.16 -1.68 9.78 -39.03 -0.38 -2.07 16 27 C 0.14 1.30 11.17 -17.61 -0.20 1.10 16 28 N -0.53 -5.86 9.18 -13.38 -0.12 -5.98 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.58 8.10 -51.92 -0.42 0.16 16 33 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 34 H 0.16 1.62 6.20 -52.49 -0.33 1.30 16 35 H 0.09 1.19 6.99 -51.93 -0.36 0.82 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.08 1.07 8.10 -51.92 -0.42 0.65 16 39 H 0.03 0.57 8.06 -51.93 -0.42 0.15 16 40 H 0.04 0.67 7.53 -51.93 -0.39 0.28 16 41 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 42 H 0.06 1.46 7.59 -51.93 -0.39 1.06 16 43 H 0.03 0.66 8.09 -51.93 -0.42 0.24 16 44 H 0.09 1.62 7.95 -51.93 -0.41 1.21 16 45 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 46 H 0.10 1.14 3.80 -51.93 -0.20 0.94 16 47 H 0.08 0.94 7.60 -51.93 -0.39 0.55 16 48 H 0.15 1.35 8.06 -52.49 -0.42 0.92 16 49 H 0.17 0.97 8.06 -52.48 -0.42 0.55 16 LS Contribution 392.04 15.07 5.91 5.91 Total: -1.00 -32.88 392.04 -9.22 -42.10 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -7.51 Total: -0.21 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: -1.86 Total: 4.10 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: -0.63 Total: -56.38 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: -0.10 Total: -12.34 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.88 -9.22 -42.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035789914.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.059 kcal (2) G-P(sol) polarization free energy of solvation -32.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds