Wall clock time and date at job start Wed Apr 1 2020 05:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42894 * 109.47125 * 2 1 4 4 C 1.35686 * 117.00243 * 180.02562 * 3 2 1 5 5 C 1.38891 * 119.62875 * 180.02562 * 4 3 2 6 6 C 1.39571 * 118.94960 * 180.02562 * 5 4 3 7 7 C 1.48156 * 120.89125 * 179.97438 * 6 5 4 8 8 O 1.21515 * 119.99919 * 138.42593 * 7 6 5 9 9 N 1.34779 * 120.00117 * 318.42482 * 7 6 5 10 10 C 1.46894 * 120.46080 * 184.06440 * 9 7 6 11 11 C 1.53354 * 108.74101 * 124.38976 * 10 9 7 12 12 C 1.52547 * 109.13184 * 52.25524 * 11 10 9 13 13 C 1.52961 * 114.06179 * 75.54453 * 12 11 10 14 14 N 1.47162 * 87.85452 * 139.44118 * 13 12 11 15 15 C 1.36938 * 135.99859 * 153.33378 * 14 13 12 16 16 H 1.07997 * 120.00266 * 353.31929 * 15 14 13 17 17 C 1.38816 * 119.99483 * 173.31695 * 15 14 13 18 18 N 1.31619 * 120.00108 * 353.55875 * 17 15 14 19 19 Si 1.86801 * 119.99717 * 173.56311 * 17 15 14 20 20 H 1.48500 * 109.47205 * 94.98615 * 19 17 15 21 21 H 1.48501 * 109.47252 * 214.97973 * 19 17 15 22 22 H 1.48500 * 109.47355 * 334.98452 * 19 17 15 23 23 C 1.47162 * 87.99625 * 333.33858 * 14 13 12 24 24 C 1.52554 * 113.43238 * 302.67122 * 12 11 10 25 25 C 1.46881 * 120.46408 * 4.08584 * 9 7 6 26 26 C 1.39973 * 118.21450 * 0.26891 * 6 5 4 27 27 C 1.37972 * 119.13367 * 359.48207 * 26 6 5 28 28 N 1.31916 * 120.98035 * 0.53455 * 27 26 6 29 29 H 1.09003 * 109.47262 * 299.99998 * 1 2 3 30 30 H 1.09005 * 109.47170 * 59.99649 * 1 2 3 31 31 H 1.09001 * 109.47227 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.46912 * 240.00278 * 2 1 3 33 33 H 1.08996 * 109.47091 * 120.00573 * 2 1 3 34 34 H 1.08002 * 120.52585 * 359.97287 * 5 4 3 35 35 H 1.08997 * 109.59550 * 4.60635 * 10 9 7 36 36 H 1.09004 * 109.71541 * 244.23708 * 10 9 7 37 37 H 1.09006 * 109.52292 * 292.35781 * 11 10 9 38 38 H 1.09008 * 109.58477 * 172.19115 * 11 10 9 39 39 H 1.08999 * 113.48835 * 24.69317 * 13 12 11 40 40 H 1.09000 * 113.48653 * 254.19083 * 13 12 11 41 41 H 0.97000 * 119.99640 * 180.02562 * 18 17 15 42 42 H 1.09003 * 113.49323 * 141.41719 * 23 14 13 43 43 H 1.08999 * 113.48899 * 271.91495 * 23 14 13 44 44 H 1.08997 * 109.52734 * 177.20752 * 24 12 11 45 45 H 1.08999 * 109.52930 * 297.42199 * 24 12 11 46 46 H 1.09002 * 109.58965 * 355.38216 * 25 9 7 47 47 H 1.08993 * 109.59314 * 115.82125 * 25 9 7 48 48 H 1.07996 * 120.43083 * 179.73035 * 26 6 5 49 49 H 1.08003 * 119.51212 * 180.27272 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3515 1.5251 -0.0005 5 6 3.8740 2.8119 0.0000 6 6 5.2597 2.9785 -0.0011 7 6 5.8632 4.3315 -0.0012 8 8 6.8303 4.5655 0.6964 9 7 5.3397 5.3029 -0.7750 10 6 5.9821 6.6217 -0.8512 11 6 6.2817 6.9397 -2.3212 12 6 5.0076 6.7614 -3.1409 13 6 3.9937 7.8942 -2.9721 14 7 3.7422 7.8105 -4.4197 15 6 2.6960 8.0960 -5.2558 16 1 1.7395 8.3838 -4.8452 17 6 2.8651 8.0154 -6.6313 18 7 4.0597 7.7894 -7.1355 19 14 1.3970 8.2280 -7.7667 20 1 1.3187 9.6415 -8.2152 21 1 1.5525 7.3418 -8.9481 22 1 0.1528 7.8698 -7.0395 23 6 5.1082 7.2852 -4.5743 24 6 4.4045 5.3646 -3.0287 25 6 4.1185 5.0578 -1.5536 26 6 6.0639 1.8328 -0.0085 27 6 5.4634 0.5906 -0.0035 28 7 4.1497 0.4715 -0.0024 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.2183 3.6702 0.0004 35 1 6.9122 6.6086 -0.2831 36 1 5.3146 7.3801 -0.4418 37 1 7.0509 6.2618 -2.6911 38 1 6.6303 7.9689 -2.4087 39 1 4.4437 8.8376 -2.6632 40 1 3.1316 7.6186 -2.3647 41 1 4.1778 7.7335 -8.0966 42 1 5.1880 6.4951 -5.3209 43 1 5.8611 8.0632 -4.7007 44 1 3.4750 5.3224 -3.5964 45 1 5.1076 4.6314 -3.4238 46 1 3.8213 4.0144 -1.4483 47 1 3.3194 5.7057 -1.1937 48 1 7.1403 1.9201 -0.0140 49 1 6.0781 -0.2974 -0.0047 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035789914.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:33 Heat of formation + Delta-G solvation = 15.861896 kcal Electronic energy + Delta-G solvation = -30752.507931 eV Core-core repulsion = 26681.660453 eV Total energy + Delta-G solvation = -4070.847478 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.23877 -41.31621 -40.24584 -38.85293 -37.24988 -34.66080 -34.02629 -33.01517 -32.11174 -31.92684 -30.89294 -28.84562 -26.80609 -26.31356 -24.98806 -24.85947 -24.00053 -23.71426 -22.72641 -21.27602 -19.75506 -18.76784 -18.59874 -18.13954 -17.63559 -17.31698 -17.15363 -16.84362 -16.76485 -16.27319 -16.13297 -15.65467 -15.41468 -15.05626 -15.00185 -14.90329 -14.64792 -14.39866 -14.08838 -13.75851 -13.67853 -13.45188 -13.30531 -13.16190 -13.02244 -12.91500 -12.78552 -12.62536 -12.45659 -12.19017 -12.16700 -11.79048 -11.70456 -11.65798 -11.44958 -11.17408 -10.96327 -10.92207 -10.79553 -10.55111 -9.71207 -9.55742 -8.89317 -7.91611 -5.22369 -0.32889 0.06280 1.45552 1.46549 1.51111 1.56047 1.77442 2.04200 2.47993 2.66434 3.14458 3.31961 3.32747 3.45168 3.57533 3.78345 3.87353 3.91367 4.04891 4.06370 4.11964 4.12471 4.19100 4.29698 4.35747 4.48098 4.52216 4.55061 4.63864 4.67063 4.73620 4.82144 4.83868 4.85140 4.91599 4.97968 4.98491 5.06013 5.13418 5.18539 5.21334 5.25606 5.31525 5.31856 5.43256 5.55598 5.71820 5.92910 6.18620 6.22722 6.71099 6.90626 6.91651 7.61550 8.64345 9.27559 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009994 B = 0.003119 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2801.083966 B = 8975.101890 C =11045.398127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.063 3.937 3 O -0.316 6.316 4 C 0.311 3.689 5 C -0.172 4.172 6 C -0.055 4.055 7 C 0.562 3.438 8 O -0.563 6.563 9 N -0.591 5.591 10 C 0.119 3.881 11 C -0.106 4.106 12 C -0.087 4.087 13 C 0.129 3.871 14 N -0.636 5.636 15 C -0.225 4.225 16 H 0.085 0.915 17 C -0.067 4.067 18 N -0.955 5.955 19 Si 0.975 3.025 20 H -0.289 1.289 21 H -0.296 1.296 22 H -0.265 1.265 23 C 0.170 3.830 24 C -0.090 4.090 25 C 0.096 3.904 26 C -0.164 4.164 27 C 0.147 3.853 28 N -0.538 5.538 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.099 0.901 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.163 0.837 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.064 0.936 38 H 0.085 0.915 39 H 0.040 0.960 40 H 0.053 0.947 41 H 0.247 0.753 42 H 0.021 0.979 43 H 0.012 0.988 44 H 0.065 0.935 45 H 0.059 0.941 46 H 0.112 0.888 47 H 0.089 0.911 48 H 0.157 0.843 49 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.317 -15.943 17.787 23.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.224 6.224 4 C 0.133 3.867 5 C -0.193 4.193 6 C -0.065 4.065 7 C 0.351 3.649 8 O -0.443 6.443 9 N -0.321 5.321 10 C -0.003 4.003 11 C -0.145 4.145 12 C -0.088 4.088 13 C 0.004 3.996 14 N -0.362 5.362 15 C -0.353 4.353 16 H 0.103 0.897 17 C -0.260 4.260 18 N -0.604 5.604 19 Si 0.804 3.196 20 H -0.216 1.216 21 H -0.222 1.222 22 H -0.189 1.189 23 C 0.044 3.956 24 C -0.129 4.129 25 C -0.026 4.026 26 C -0.185 4.185 27 C -0.009 4.009 28 N -0.263 5.263 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.118 0.882 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.180 0.820 35 H 0.111 0.889 36 H 0.105 0.895 37 H 0.083 0.917 38 H 0.103 0.897 39 H 0.058 0.942 40 H 0.072 0.928 41 H 0.056 0.944 42 H 0.040 0.960 43 H 0.030 0.970 44 H 0.083 0.917 45 H 0.078 0.922 46 H 0.129 0.871 47 H 0.107 0.893 48 H 0.175 0.825 49 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -0.645 -16.371 17.846 24.226 hybrid contribution -0.058 1.246 -1.417 1.887 sum -0.703 -15.125 16.429 22.342 Atomic orbital electron populations 1.21853 0.91415 1.04222 1.03275 1.22811 0.96012 0.79837 1.02544 1.86248 1.16294 1.32346 1.87511 1.19756 0.84650 0.89686 0.92614 1.21424 0.94488 0.97011 1.06369 1.20083 0.93329 0.94118 0.99018 1.18352 0.82715 0.84241 0.79641 1.90762 1.28358 1.82407 1.42740 1.48065 1.27321 1.12771 1.43980 1.21690 0.99292 0.82777 0.96496 1.21671 0.96098 1.02685 0.94016 1.21853 0.95857 0.95281 0.95855 1.22553 0.95928 0.95492 0.85648 1.46010 1.11298 1.75195 1.03665 1.19341 0.89700 1.38856 0.87419 0.89679 1.25625 0.99232 1.03104 0.98075 1.70038 1.22275 1.57137 1.10913 0.85106 0.79175 0.77007 0.78344 1.21627 1.22235 1.18911 1.21887 0.86168 0.94183 0.93385 1.21345 1.00960 0.94480 0.96066 1.22480 0.85986 1.04058 0.90037 1.22257 1.02336 0.91671 1.02200 1.22969 0.88573 0.98062 0.91270 1.67296 1.07580 1.33191 1.18223 0.91557 0.91945 0.88213 0.91670 0.91315 0.82012 0.88904 0.89520 0.91729 0.89698 0.94187 0.92849 0.94435 0.96000 0.97006 0.91674 0.92225 0.87077 0.89268 0.82544 0.78081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 10.28 71.98 0.74 -1.03 16 2 C 0.06 1.00 6.03 71.98 0.43 1.44 16 3 O -0.32 -6.73 10.11 -90.05 -0.91 -7.64 16 4 C 0.31 6.80 7.49 84.80 0.63 7.44 16 5 C -0.17 -3.65 7.39 22.75 0.17 -3.48 16 6 C -0.05 -1.23 5.35 -19.90 -0.11 -1.33 16 7 C 0.56 14.70 7.39 86.88 0.64 15.34 16 8 O -0.56 -17.75 16.38 -3.76 -0.06 -17.81 16 9 N -0.59 -14.49 2.94 -821.52 -2.41 -16.90 16 10 C 0.12 2.84 6.34 86.42 0.55 3.39 16 11 C -0.11 -2.89 5.30 30.56 0.16 -2.72 16 12 C -0.09 -2.96 0.84 -52.51 -0.04 -3.00 16 13 C 0.13 4.84 7.63 83.31 0.64 5.48 16 14 N -0.64 -31.82 3.53 -738.26 -2.61 -34.43 16 15 C -0.22 -12.45 10.73 84.03 0.90 -11.55 16 16 H 0.09 4.48 7.84 -2.91 -0.02 4.46 16 17 C -0.07 -3.83 5.50 84.86 0.47 -3.37 16 18 N -0.95 -58.10 11.83 21.65 0.26 -57.85 16 19 Si 0.98 45.56 29.56 68.60 2.03 47.58 16 20 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 21 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 22 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 23 C 0.17 7.92 6.36 83.30 0.53 8.45 16 24 C -0.09 -2.80 5.27 30.57 0.16 -2.64 16 25 C 0.10 2.28 5.13 86.43 0.44 2.72 16 26 C -0.16 -3.06 9.78 22.63 0.22 -2.84 16 27 C 0.15 2.35 11.17 84.62 0.94 3.29 16 28 N -0.54 -10.85 9.18 -309.13 -2.84 -13.69 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 1.05 8.10 -2.38 -0.02 1.03 16 33 H 0.07 1.04 8.10 -2.39 -0.02 1.02 16 34 H 0.16 3.10 6.20 -2.91 -0.02 3.08 16 35 H 0.09 2.25 6.99 -2.39 -0.02 2.23 16 36 H 0.09 1.85 8.14 -2.38 -0.02 1.84 16 37 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 38 H 0.08 2.22 8.10 -2.38 -0.02 2.20 16 39 H 0.04 1.46 8.06 -2.39 -0.02 1.45 16 40 H 0.05 1.84 7.53 -2.39 -0.02 1.82 16 41 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 42 H 0.02 1.15 7.59 -2.39 -0.02 1.13 16 43 H 0.01 0.59 8.09 -2.39 -0.02 0.58 16 44 H 0.06 2.37 7.95 -2.39 -0.02 2.35 16 45 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 46 H 0.11 2.41 3.80 -2.39 -0.01 2.41 16 47 H 0.09 1.95 7.60 -2.39 -0.02 1.94 16 48 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 49 H 0.20 1.64 8.06 -2.91 -0.02 1.62 16 Total: -1.00 -72.36 392.04 1.88 -70.48 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 0.95 Total: 14.66 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: 7.48 Total: 15.59 kcal Atomic # 7 Polarization: -115.26 SS G_CDS: -7.61 Total: -122.87 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.97 Total: -25.45 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.58 kcal Total: -72.36 1.88 -70.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035789914.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.341 kcal (2) G-P(sol) polarization free energy of solvation -72.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds