Wall clock time and date at job start Wed Apr 1 2020 05:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42891 * 109.46945 * 2 1 4 4 C 1.35499 * 116.99955 * 180.02562 * 3 2 1 5 5 C 1.39163 * 119.52994 * 179.97438 * 4 3 2 6 6 C 1.37953 * 119.26699 * 179.97438 * 5 4 3 7 7 C 1.40282 * 118.35838 * 0.02562 * 6 5 4 8 8 C 1.47612 * 120.50245 * 179.97438 * 7 6 5 9 9 O 1.21587 * 119.99804 * 326.87287 * 8 7 6 10 10 N 1.34768 * 120.00320 * 146.86895 * 8 7 6 11 11 C 1.46529 * 120.97759 * 354.71837 * 10 8 7 12 12 C 1.51778 * 110.13521 * 233.78314 * 11 10 8 13 13 C 1.49519 * 115.06794 * 318.37857 * 12 11 10 14 14 H 1.09002 * 105.18959 * 156.93568 * 13 12 11 15 15 C 1.52635 * 117.06421 * 40.18138 * 13 12 11 16 16 H 1.09001 * 112.17060 * 83.01475 * 15 13 12 17 17 C 1.56123 * 101.81508 * 203.13483 * 15 13 12 18 18 C 1.55099 * 101.08210 * 37.63086 * 17 15 13 19 19 N 1.46262 * 114.17040 * 272.10837 * 13 12 11 20 20 C 1.36932 * 125.96115 * 315.60238 * 19 13 12 21 21 H 1.07998 * 120.00466 * 351.37411 * 20 19 13 22 22 C 1.38814 * 119.99788 * 171.37910 * 20 19 13 23 23 N 1.31619 * 119.99787 * 326.17035 * 22 20 19 24 24 Si 1.86796 * 120.00156 * 146.17185 * 22 20 19 25 25 H 1.48504 * 109.47362 * 179.97438 * 24 22 20 26 26 H 1.48497 * 109.47164 * 59.99946 * 24 22 20 27 27 H 1.48500 * 109.47168 * 300.00009 * 24 22 20 28 28 C 1.46168 * 120.96295 * 175.04393 * 10 8 7 29 29 C 1.39526 * 118.99845 * 0.25393 * 7 6 5 30 30 N 1.31666 * 120.62958 * 359.44792 * 29 7 6 31 31 H 1.08998 * 109.46986 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46877 * 299.99661 * 1 2 3 33 33 H 1.08990 * 109.47096 * 60.00001 * 1 2 3 34 34 H 1.09001 * 109.47068 * 239.99610 * 2 1 3 35 35 H 1.08998 * 109.46801 * 120.00111 * 2 1 3 36 36 H 1.08003 * 120.36486 * 0.02562 * 5 4 3 37 37 H 1.08000 * 120.82188 * 179.97438 * 6 5 4 38 38 H 1.08999 * 109.36085 * 113.57122 * 11 10 8 39 39 H 1.09004 * 109.35885 * 353.98325 * 11 10 8 40 40 H 1.09003 * 108.36566 * 196.92871 * 12 11 10 41 41 H 1.08999 * 108.36529 * 79.82810 * 12 11 10 42 42 H 1.09001 * 111.09759 * 279.68015 * 17 15 13 43 43 H 1.08998 * 111.10127 * 155.58293 * 17 15 13 44 44 H 1.08996 * 110.35157 * 204.08327 * 18 17 15 45 45 H 1.08996 * 110.44101 * 81.84652 * 18 17 15 46 46 H 0.97002 * 120.00339 * 358.10764 * 23 22 20 47 47 H 1.08998 * 109.51531 * 0.99339 * 28 10 8 48 48 H 1.09000 * 109.04077 * 241.08888 * 28 10 8 49 49 H 1.08007 * 119.68421 * 179.72631 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3497 1.5248 -0.0005 5 6 3.8710 2.8151 -0.0011 6 6 5.2394 2.9896 -0.0011 7 6 6.0565 1.8493 -0.0011 8 6 7.5268 1.9811 -0.0017 9 8 8.0533 2.9136 -0.5776 10 7 8.2855 1.0680 0.6362 11 6 7.6724 0.0016 1.4324 12 6 8.2499 -0.0003 2.8360 13 6 9.7276 0.2143 2.9133 14 1 9.9086 0.5958 3.9182 15 6 10.3292 1.2510 1.9683 16 1 10.2402 2.2646 2.3592 17 6 11.8154 0.7807 1.8821 18 6 11.6411 -0.7605 1.8876 19 7 10.5171 -1.0128 2.8131 20 6 10.2566 -2.1916 3.4593 21 1 9.4884 -2.2337 4.2173 22 6 10.9799 -3.3326 3.1403 23 7 11.3864 -3.5298 1.9040 24 14 11.3764 -4.5882 4.4653 25 1 12.1518 -5.7068 3.8713 26 1 10.1134 -5.1139 5.0428 27 1 12.1786 -3.9423 5.5351 28 6 9.7443 1.1168 0.5596 29 6 5.4586 0.5887 -0.0065 30 7 4.1475 0.4681 -0.0006 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.8934 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 3.2115 3.6704 -0.0007 37 1 5.6710 3.9796 -0.0020 38 1 7.8684 -0.9607 0.9595 39 1 6.5957 0.1634 1.4849 40 1 8.0172 -0.9579 3.3018 41 1 7.7584 0.7847 3.4107 42 1 12.3835 1.1144 2.7504 43 1 12.2812 1.1196 0.9567 44 1 12.5479 -1.2431 2.2521 45 1 11.3971 -1.1195 0.8878 46 1 11.1571 -2.8916 1.2104 47 1 10.0489 1.9716 -0.0443 48 1 10.1073 0.1973 0.1005 49 1 6.0772 -0.2967 -0.0110 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036731034.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:03 Heat of formation + Delta-G solvation = 6.277460 kcal Electronic energy + Delta-G solvation = -31007.271881 eV Core-core repulsion = 26936.008790 eV Total energy + Delta-G solvation = -4071.263090 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.24117 -40.11675 -38.66900 -37.81520 -35.49582 -33.17109 -32.81967 -32.35366 -31.94377 -30.66711 -29.17880 -27.88953 -25.71309 -24.74366 -24.21403 -23.61064 -22.75724 -22.42453 -20.32146 -20.13302 -18.89723 -18.54504 -17.74027 -17.32130 -16.63577 -16.57062 -15.98567 -15.45278 -15.10938 -14.81989 -14.46678 -14.30953 -14.23559 -14.11369 -13.78366 -13.57060 -13.25389 -13.14354 -13.02958 -12.85323 -12.76389 -12.60602 -12.41398 -11.92476 -11.88952 -11.50727 -11.27491 -11.04236 -11.02204 -10.64337 -10.42492 -10.32046 -10.27673 -10.22867 -10.05384 -10.04693 -9.98453 -9.65758 -9.58060 -8.77141 -8.40959 -8.30445 -6.96714 -6.21089 -3.09424 0.57088 0.92224 2.66383 2.72374 3.05657 3.47274 3.53271 3.55651 3.69995 3.94059 4.41178 4.54202 4.57094 4.66672 4.68411 4.75450 4.83686 4.98067 5.05989 5.08184 5.17938 5.25257 5.29989 5.30892 5.35652 5.38503 5.49024 5.53530 5.57829 5.69173 5.70586 5.75380 5.82775 5.90405 6.04407 6.05077 6.11475 6.14996 6.29379 6.40336 6.47929 6.59615 6.80444 6.84146 6.89700 6.98397 7.00431 7.46749 7.51713 7.75391 8.17346 8.44862 8.97414 9.79397 10.37105 11.16891 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012469 B = 0.002972 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.982544 B = 9419.394655 C =11167.731410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.063 3.937 3 O -0.305 6.305 4 C 0.340 3.660 5 C -0.198 4.198 6 C 0.013 3.987 7 C -0.220 4.220 8 C 0.568 3.432 9 O -0.545 6.545 10 N -0.594 5.594 11 C 0.101 3.899 12 C -0.135 4.135 13 C 0.172 3.828 14 H 0.010 0.990 15 C -0.106 4.106 16 H 0.081 0.919 17 C -0.132 4.132 18 C 0.141 3.859 19 N -0.591 5.591 20 C -0.342 4.342 21 H 0.068 0.932 22 C -0.021 4.021 23 N -0.910 5.910 24 Si 1.060 2.940 25 H -0.287 1.287 26 H -0.294 1.294 27 H -0.295 1.295 28 C 0.120 3.880 29 C 0.174 3.826 30 N -0.542 5.542 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.148 0.852 37 H 0.151 0.849 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.049 0.951 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.052 0.948 45 H 0.024 0.976 46 H 0.269 0.731 47 H 0.088 0.912 48 H 0.077 0.923 49 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.887 10.658 -3.853 19.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.012 4.012 3 O -0.211 6.211 4 C 0.161 3.839 5 C -0.219 4.219 6 C -0.013 4.013 7 C -0.225 4.225 8 C 0.356 3.644 9 O -0.424 6.424 10 N -0.325 5.325 11 C -0.021 4.021 12 C -0.175 4.175 13 C 0.065 3.935 14 H 0.028 0.972 15 C -0.125 4.125 16 H 0.099 0.901 17 C -0.171 4.171 18 C 0.016 3.984 19 N -0.317 5.317 20 C -0.469 4.469 21 H 0.086 0.914 22 C -0.224 4.224 23 N -0.551 5.551 24 Si 0.890 3.110 25 H -0.212 1.212 26 H -0.221 1.221 27 H -0.222 1.222 28 C -0.002 4.002 29 C 0.017 3.983 30 N -0.266 5.266 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.165 0.835 37 H 0.169 0.831 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.068 0.932 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.070 0.930 45 H 0.042 0.958 46 H 0.080 0.920 47 H 0.106 0.894 48 H 0.095 0.905 49 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -15.484 8.934 -3.779 18.272 hybrid contribution -0.487 1.854 -0.117 1.921 sum -15.972 10.788 -3.897 19.663 Atomic orbital electron populations 1.21827 0.92891 1.03054 1.03274 1.22685 0.94814 0.80703 1.02972 1.86196 1.16767 1.31171 1.87000 1.20053 0.84110 0.90037 0.89697 1.21000 0.95485 0.95840 1.09579 1.21442 0.91559 0.99060 0.89220 1.20779 0.94848 0.95261 1.11635 1.17892 0.85799 0.81768 0.78965 1.90759 1.74004 1.31937 1.45691 1.47725 1.07379 1.28904 1.48485 1.21851 0.97267 0.90284 0.92714 1.21240 0.98027 1.03027 0.95168 1.19452 0.89629 0.88042 0.96412 0.97194 1.22327 0.96380 0.98654 0.95187 0.90106 1.23084 0.94683 0.98192 1.01159 1.21650 0.92241 0.91063 0.93483 1.44704 1.24919 1.08945 1.53128 1.19586 1.23132 0.87347 1.16814 0.91380 1.25611 0.99271 0.97739 0.99769 1.70838 1.49519 1.35099 0.99601 0.83578 0.76420 0.75761 0.75277 1.21226 1.22098 1.22232 1.21610 0.78013 1.03193 0.97343 1.23071 0.89199 0.96866 0.89195 1.67419 1.06177 1.32736 1.20256 0.90141 0.91623 0.91667 0.91321 0.91224 0.83454 0.83142 0.90587 0.89839 0.89562 0.93205 0.91401 0.91488 0.92982 0.95792 0.91971 0.89390 0.90512 0.80847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.28 37.16 0.38 -0.57 16 2 C 0.06 0.56 6.02 37.16 0.22 0.78 16 3 O -0.30 -3.29 10.10 -18.19 -0.18 -3.47 16 4 C 0.34 3.99 7.49 -16.96 -0.13 3.87 16 5 C -0.20 -2.05 10.02 -39.34 -0.39 -2.44 16 6 C 0.01 0.14 9.73 -38.92 -0.38 -0.23 16 7 C -0.22 -2.89 5.38 -104.82 -0.56 -3.45 16 8 C 0.57 8.82 7.42 -12.44 -0.09 8.73 16 9 O -0.54 -9.83 16.27 5.29 0.09 -9.74 16 10 N -0.59 -9.26 2.94 -175.80 -0.52 -9.78 16 11 C 0.10 1.54 4.84 -4.65 -0.02 1.51 16 12 C -0.13 -2.33 5.60 -29.07 -0.16 -2.49 16 13 C 0.17 3.36 2.63 -69.97 -0.18 3.18 16 14 H 0.01 0.22 8.06 -51.93 -0.42 -0.20 16 15 C -0.11 -1.78 3.72 -89.08 -0.33 -2.11 16 16 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 17 C -0.13 -2.28 6.47 -23.95 -0.15 -2.44 16 18 C 0.14 3.09 4.83 -2.23 -0.01 3.08 16 19 N -0.59 -13.87 3.27 -165.71 -0.54 -14.42 16 20 C -0.34 -9.03 9.17 -15.06 -0.14 -9.16 16 21 H 0.07 1.80 7.48 -52.49 -0.39 1.41 16 22 C -0.02 -0.59 5.01 -17.43 -0.09 -0.67 16 23 N -0.91 -26.34 12.94 55.49 0.72 -25.62 16 24 Si 1.06 24.66 30.03 -169.99 -5.10 19.56 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 27 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 28 C 0.12 1.97 5.49 -4.16 -0.02 1.95 16 29 C 0.17 2.18 8.56 -17.14 -0.15 2.03 16 30 N -0.54 -6.83 9.18 -12.96 -0.12 -6.95 16 31 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 35 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 36 H 0.15 1.15 8.06 -52.48 -0.42 0.73 16 37 H 0.15 1.50 8.03 -52.49 -0.42 1.08 16 38 H 0.08 1.25 8.05 -51.93 -0.42 0.83 16 39 H 0.08 1.10 4.27 -51.93 -0.22 0.88 16 40 H 0.09 1.65 6.79 -51.93 -0.35 1.30 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.07 1.01 7.98 -51.93 -0.41 0.59 16 44 H 0.05 1.27 7.79 -51.93 -0.40 0.87 16 45 H 0.02 0.56 5.86 -51.93 -0.30 0.26 16 46 H 0.27 7.73 6.02 -40.82 -0.25 7.48 16 47 H 0.09 1.42 6.99 -51.93 -0.36 1.05 16 48 H 0.08 1.35 6.49 -51.93 -0.34 1.01 16 49 H 0.17 2.07 5.81 -52.48 -0.31 1.76 16 LS Contribution 381.46 15.07 5.75 5.75 Total: -1.00 -31.38 381.46 -9.32 -40.70 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -7.20 Total: 2.42 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -2.21 Total: 1.55 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: -0.46 Total: -56.77 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: -0.10 Total: -13.21 kcal Atomic # 14 Polarization: 24.66 SS G_CDS: -5.10 Total: 19.56 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.38 -9.32 -40.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036731034.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.982 kcal (2) G-P(sol) polarization free energy of solvation -31.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds