Wall clock time and date at job start Wed Apr 1 2020 05:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42891 * 109.46945 * 2 1 4 4 C 1.35499 * 116.99955 * 180.02562 * 3 2 1 5 5 C 1.39163 * 119.52994 * 179.97438 * 4 3 2 6 6 C 1.37953 * 119.26699 * 179.97438 * 5 4 3 7 7 C 1.40282 * 118.35838 * 0.02562 * 6 5 4 8 8 C 1.47612 * 120.50245 * 179.97438 * 7 6 5 9 9 O 1.21587 * 119.99804 * 326.87287 * 8 7 6 10 10 N 1.34768 * 120.00320 * 146.86895 * 8 7 6 11 11 C 1.46529 * 120.97759 * 354.71837 * 10 8 7 12 12 C 1.51778 * 110.13521 * 233.78314 * 11 10 8 13 13 C 1.49519 * 115.06794 * 318.37857 * 12 11 10 14 14 H 1.09002 * 105.18959 * 156.93568 * 13 12 11 15 15 C 1.52635 * 117.06421 * 40.18138 * 13 12 11 16 16 H 1.09001 * 112.17060 * 83.01475 * 15 13 12 17 17 C 1.56123 * 101.81508 * 203.13483 * 15 13 12 18 18 C 1.55099 * 101.08210 * 37.63086 * 17 15 13 19 19 N 1.46262 * 114.17040 * 272.10837 * 13 12 11 20 20 C 1.36932 * 125.96115 * 315.60238 * 19 13 12 21 21 H 1.07998 * 120.00466 * 351.37411 * 20 19 13 22 22 C 1.38814 * 119.99788 * 171.37910 * 20 19 13 23 23 N 1.31619 * 119.99787 * 326.17035 * 22 20 19 24 24 Si 1.86796 * 120.00156 * 146.17185 * 22 20 19 25 25 H 1.48504 * 109.47362 * 179.97438 * 24 22 20 26 26 H 1.48497 * 109.47164 * 59.99946 * 24 22 20 27 27 H 1.48500 * 109.47168 * 300.00009 * 24 22 20 28 28 C 1.46168 * 120.96295 * 175.04393 * 10 8 7 29 29 C 1.39526 * 118.99845 * 0.25393 * 7 6 5 30 30 N 1.31666 * 120.62958 * 359.44792 * 29 7 6 31 31 H 1.08998 * 109.46986 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46877 * 299.99661 * 1 2 3 33 33 H 1.08990 * 109.47096 * 60.00001 * 1 2 3 34 34 H 1.09001 * 109.47068 * 239.99610 * 2 1 3 35 35 H 1.08998 * 109.46801 * 120.00111 * 2 1 3 36 36 H 1.08003 * 120.36486 * 0.02562 * 5 4 3 37 37 H 1.08000 * 120.82188 * 179.97438 * 6 5 4 38 38 H 1.08999 * 109.36085 * 113.57122 * 11 10 8 39 39 H 1.09004 * 109.35885 * 353.98325 * 11 10 8 40 40 H 1.09003 * 108.36566 * 196.92871 * 12 11 10 41 41 H 1.08999 * 108.36529 * 79.82810 * 12 11 10 42 42 H 1.09001 * 111.09759 * 279.68015 * 17 15 13 43 43 H 1.08998 * 111.10127 * 155.58293 * 17 15 13 44 44 H 1.08996 * 110.35157 * 204.08327 * 18 17 15 45 45 H 1.08996 * 110.44101 * 81.84652 * 18 17 15 46 46 H 0.97002 * 120.00339 * 358.10764 * 23 22 20 47 47 H 1.08998 * 109.51531 * 0.99339 * 28 10 8 48 48 H 1.09000 * 109.04077 * 241.08888 * 28 10 8 49 49 H 1.08007 * 119.68421 * 179.72631 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3497 1.5248 -0.0005 5 6 3.8710 2.8151 -0.0011 6 6 5.2394 2.9896 -0.0011 7 6 6.0565 1.8493 -0.0011 8 6 7.5268 1.9811 -0.0017 9 8 8.0533 2.9136 -0.5776 10 7 8.2855 1.0680 0.6362 11 6 7.6724 0.0016 1.4324 12 6 8.2499 -0.0003 2.8360 13 6 9.7276 0.2143 2.9133 14 1 9.9086 0.5958 3.9182 15 6 10.3292 1.2510 1.9683 16 1 10.2402 2.2646 2.3592 17 6 11.8154 0.7807 1.8821 18 6 11.6411 -0.7605 1.8876 19 7 10.5171 -1.0128 2.8131 20 6 10.2566 -2.1916 3.4593 21 1 9.4884 -2.2337 4.2173 22 6 10.9799 -3.3326 3.1403 23 7 11.3864 -3.5298 1.9040 24 14 11.3764 -4.5882 4.4653 25 1 12.1518 -5.7068 3.8713 26 1 10.1134 -5.1139 5.0428 27 1 12.1786 -3.9423 5.5351 28 6 9.7443 1.1168 0.5596 29 6 5.4586 0.5887 -0.0065 30 7 4.1475 0.4681 -0.0006 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.8934 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 3.2115 3.6704 -0.0007 37 1 5.6710 3.9796 -0.0020 38 1 7.8684 -0.9607 0.9595 39 1 6.5957 0.1634 1.4849 40 1 8.0172 -0.9579 3.3018 41 1 7.7584 0.7847 3.4107 42 1 12.3835 1.1144 2.7504 43 1 12.2812 1.1196 0.9567 44 1 12.5479 -1.2431 2.2521 45 1 11.3971 -1.1195 0.8878 46 1 11.1571 -2.8916 1.2104 47 1 10.0489 1.9716 -0.0443 48 1 10.1073 0.1973 0.1005 49 1 6.0772 -0.2967 -0.0110 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036731034.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:01 Heat of formation + Delta-G solvation = -13.533287 kcal Electronic energy + Delta-G solvation = -31008.130939 eV Core-core repulsion = 26936.008790 eV Total energy + Delta-G solvation = -4072.122149 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.28720 -41.29821 -39.96213 -38.84161 -36.94946 -34.90010 -33.73420 -33.47940 -33.15687 -31.70286 -30.77717 -29.36919 -27.07825 -26.06660 -25.50772 -24.72882 -24.09541 -23.24881 -21.95252 -21.47427 -20.16033 -19.65182 -19.15128 -18.67945 -17.81406 -17.44286 -17.24808 -16.88607 -16.32811 -16.00146 -15.83837 -15.73642 -15.47952 -15.07619 -15.03092 -14.97418 -14.50622 -14.43711 -14.30101 -14.27002 -13.75786 -13.45446 -13.40505 -13.34626 -12.93638 -12.82044 -12.63694 -12.52717 -12.39805 -12.03453 -11.87450 -11.84247 -11.81417 -11.75318 -11.60737 -11.36829 -11.24341 -11.12581 -10.72436 -10.36918 -9.81766 -9.60060 -8.91963 -8.34657 -5.17877 -0.39698 0.04080 1.56226 1.58720 1.66288 1.80967 1.84600 1.91328 2.58255 2.64952 3.03678 3.21683 3.29167 3.46768 3.60501 3.67041 3.71697 3.88209 3.90538 3.93112 4.00396 4.06722 4.11404 4.17279 4.27310 4.36725 4.41820 4.43924 4.50672 4.51960 4.61362 4.69099 4.77114 4.83431 4.84741 4.91082 4.94131 4.99630 5.02537 5.12157 5.17360 5.23716 5.25858 5.28696 5.32827 5.44379 5.74907 6.06170 6.26515 6.37301 6.55661 6.93967 6.95179 7.78083 8.39157 9.04476 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012469 B = 0.002972 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.982544 B = 9419.394655 C =11167.731410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.058 3.942 3 O -0.307 6.307 4 C 0.331 3.669 5 C -0.187 4.187 6 C 0.016 3.984 7 C -0.232 4.232 8 C 0.573 3.427 9 O -0.570 6.570 10 N -0.595 5.595 11 C 0.113 3.887 12 C -0.131 4.131 13 C 0.166 3.834 14 H 0.000 1.000 15 C -0.094 4.094 16 H 0.104 0.896 17 C -0.118 4.118 18 C 0.144 3.856 19 N -0.609 5.609 20 C -0.338 4.338 21 H 0.064 0.936 22 C -0.075 4.075 23 N -0.942 5.942 24 Si 1.107 2.893 25 H -0.296 1.296 26 H -0.275 1.275 27 H -0.287 1.287 28 C 0.125 3.875 29 C 0.170 3.830 30 N -0.554 5.554 31 H 0.096 0.904 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.177 0.823 37 H 0.166 0.834 38 H 0.059 0.941 39 H 0.108 0.892 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.094 0.906 44 H 0.017 0.983 45 H 0.008 0.992 46 H 0.257 0.743 47 H 0.096 0.904 48 H 0.059 0.941 49 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.776 12.521 -3.434 22.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.017 4.017 3 O -0.214 6.214 4 C 0.153 3.847 5 C -0.207 4.207 6 C -0.009 4.009 7 C -0.238 4.238 8 C 0.362 3.638 9 O -0.450 6.450 10 N -0.325 5.325 11 C -0.010 4.010 12 C -0.170 4.170 13 C 0.060 3.940 14 H 0.018 0.982 15 C -0.114 4.114 16 H 0.122 0.878 17 C -0.156 4.156 18 C 0.019 3.981 19 N -0.335 5.335 20 C -0.466 4.466 21 H 0.082 0.918 22 C -0.272 4.272 23 N -0.585 5.585 24 Si 0.933 3.067 25 H -0.222 1.222 26 H -0.201 1.201 27 H -0.214 1.214 28 C 0.003 3.997 29 C 0.013 3.987 30 N -0.278 5.278 31 H 0.115 0.885 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.194 0.806 37 H 0.183 0.817 38 H 0.077 0.923 39 H 0.126 0.874 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.112 0.888 44 H 0.036 0.964 45 H 0.025 0.975 46 H 0.068 0.932 47 H 0.114 0.886 48 H 0.077 0.923 49 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -17.410 10.825 -3.344 20.772 hybrid contribution -0.009 1.323 -0.255 1.347 sum -17.419 12.148 -3.599 21.539 Atomic orbital electron populations 1.21834 0.90790 1.04259 1.03551 1.22866 0.96463 0.79847 1.02506 1.86211 1.16198 1.32253 1.86708 1.20380 0.84489 0.90478 0.89391 1.21284 0.95409 0.96193 1.07823 1.21642 0.91779 0.99086 0.88416 1.20651 0.93460 0.96231 1.13476 1.18162 0.86645 0.80967 0.77993 1.90743 1.74708 1.32931 1.46651 1.47702 1.07108 1.29047 1.48635 1.21739 0.98482 0.89555 0.91211 1.21138 0.96704 1.02539 0.96660 1.19661 0.90720 0.87005 0.96642 0.98222 1.22295 0.95518 0.98743 0.94811 0.87802 1.23004 0.95486 0.94183 1.02953 1.21562 0.90349 0.94229 0.92005 1.44899 1.26333 1.09121 1.53126 1.19784 1.22272 0.88368 1.16165 0.91819 1.26793 0.99727 1.00030 1.00621 1.70937 1.51748 1.35572 1.00248 0.82920 0.76838 0.73695 0.73207 1.22216 1.20110 1.21351 1.21486 0.78652 1.02626 0.96943 1.23025 0.89340 0.96770 0.89517 1.67409 1.06131 1.33520 1.20769 0.88497 0.91361 0.91317 0.91751 0.91756 0.80575 0.81673 0.92318 0.87441 0.91787 0.91006 0.90635 0.88751 0.96415 0.97468 0.93244 0.88558 0.92277 0.80900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 10.28 71.99 0.74 -0.80 16 2 C 0.06 0.94 6.02 71.99 0.43 1.37 16 3 O -0.31 -6.03 10.10 -88.00 -0.89 -6.92 16 4 C 0.33 7.12 7.49 84.83 0.64 7.75 16 5 C -0.19 -3.31 10.02 22.42 0.22 -3.09 16 6 C 0.02 0.32 9.73 22.70 0.22 0.54 16 7 C -0.23 -5.72 5.38 -20.00 -0.11 -5.82 16 8 C 0.57 16.95 7.42 86.72 0.64 17.59 16 9 O -0.57 -19.62 16.27 -3.99 -0.06 -19.69 16 10 N -0.59 -17.94 2.94 -828.37 -2.44 -20.38 16 11 C 0.11 3.36 4.84 85.97 0.42 3.78 16 12 C -0.13 -4.45 5.60 29.08 0.16 -4.28 16 13 C 0.17 6.42 2.63 43.80 0.12 6.54 16 14 H 0.00 0.00 8.06 -2.39 -0.02 -0.02 16 15 C -0.09 -3.03 3.72 -9.79 -0.04 -3.06 16 16 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 17 C -0.12 -3.94 6.47 32.40 0.21 -3.73 16 18 C 0.14 6.50 4.83 86.85 0.42 6.92 16 19 N -0.61 -29.17 3.27 -678.18 -2.22 -31.38 16 20 C -0.34 -18.23 9.17 84.03 0.77 -17.46 16 21 H 0.06 3.43 7.48 -2.91 -0.02 3.40 16 22 C -0.07 -4.19 5.01 84.86 0.43 -3.77 16 23 N -0.94 -56.53 12.94 21.65 0.28 -56.25 16 24 Si 1.11 50.65 30.03 68.60 2.06 52.71 16 25 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 26 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 27 H -0.29 -12.59 7.11 99.48 0.71 -11.89 16 28 C 0.13 3.98 5.49 86.48 0.48 4.45 16 29 C 0.17 4.09 8.56 85.03 0.73 4.82 16 30 N -0.55 -13.26 9.18 -307.81 -2.82 -16.08 16 31 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.06 1.09 8.10 -2.39 -0.02 1.07 16 35 H 0.06 1.10 8.10 -2.39 -0.02 1.08 16 36 H 0.18 2.07 8.06 -2.91 -0.02 2.04 16 37 H 0.17 2.80 8.03 -2.91 -0.02 2.78 16 38 H 0.06 1.97 8.05 -2.39 -0.02 1.95 16 39 H 0.11 2.73 4.27 -2.38 -0.01 2.72 16 40 H 0.06 2.47 6.79 -2.39 -0.02 2.46 16 41 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 43 H 0.09 2.66 7.98 -2.39 -0.02 2.64 16 44 H 0.02 0.90 7.79 -2.39 -0.02 0.88 16 45 H 0.01 0.37 5.86 -2.39 -0.01 0.35 16 46 H 0.26 15.52 6.02 -92.71 -0.56 14.96 16 47 H 0.10 2.94 6.99 -2.39 -0.02 2.92 16 48 H 0.06 2.10 6.49 -2.39 -0.02 2.08 16 49 H 0.17 4.06 5.81 -2.91 -0.02 4.04 16 Total: -1.00 -68.95 381.46 1.55 -67.40 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 1.17 Total: 18.82 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: 6.48 Total: 11.77 kcal Atomic # 7 Polarization: -116.89 SS G_CDS: -7.20 Total: -124.09 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -0.95 Total: -26.61 kcal Atomic # 14 Polarization: 50.65 SS G_CDS: 2.06 Total: 52.71 kcal Total: -68.95 1.55 -67.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036731034.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.864 kcal (2) G-P(sol) polarization free energy of solvation -68.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds