Wall clock time and date at job start Wed Apr 1 2020 05:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42905 * 109.47120 * 2 1 4 4 C 1.35680 * 117.00114 * 180.02562 * 3 2 1 5 5 C 1.38896 * 119.62600 * 179.97438 * 4 3 2 6 6 C 1.39570 * 118.94999 * 179.72456 * 5 4 3 7 7 C 1.48165 * 120.89395 * 180.27454 * 6 5 4 8 8 O 1.21515 * 119.99701 * 218.46803 * 7 6 5 9 9 N 1.34776 * 119.99861 * 38.46838 * 7 6 5 10 10 C 1.46591 * 119.68479 * 5.84232 * 9 7 6 11 11 C 1.53948 * 110.57808 * 132.15032 * 10 9 7 12 12 C 1.51527 * 107.34649 * 51.05216 * 11 10 9 13 13 H 1.08994 * 109.27338 * 53.02555 * 12 11 10 14 14 C 1.55366 * 107.79164 * 295.14382 * 12 11 10 15 15 H 1.08997 * 111.50934 * 308.81169 * 14 12 11 16 16 C 1.53748 * 100.21836 * 190.91047 * 14 12 11 17 17 C 1.55292 * 101.84081 * 39.09468 * 16 14 12 18 18 N 1.45465 * 117.35144 * 178.08970 * 12 11 10 19 19 C 1.36927 * 126.40845 * 329.34810 * 18 12 11 20 20 H 1.08004 * 120.00339 * 359.97438 * 19 18 12 21 21 C 1.38812 * 120.00286 * 180.02562 * 19 18 12 22 22 N 1.31620 * 119.99956 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00463 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47007 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47191 * 119.99613 * 23 21 19 26 26 H 1.48499 * 109.47105 * 239.99871 * 23 21 19 27 27 C 1.47714 * 119.67990 * 185.56435 * 9 7 6 28 28 C 1.39966 * 118.21365 * 0.53090 * 6 5 4 29 29 C 1.37978 * 119.13413 * 359.49054 * 28 6 5 30 30 N 1.31907 * 120.97888 * 0.24790 * 29 28 6 31 31 H 1.09000 * 109.47434 * 59.99872 * 1 2 3 32 32 H 1.08997 * 109.47336 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46798 * 299.99601 * 1 2 3 34 34 H 1.08999 * 109.47200 * 240.00067 * 2 1 3 35 35 H 1.09000 * 109.47434 * 120.00128 * 2 1 3 36 36 H 1.08007 * 120.52110 * 0.02562 * 5 4 3 37 37 H 1.09003 * 109.25487 * 252.43316 * 10 9 7 38 38 H 1.08998 * 109.25956 * 11.86224 * 10 9 7 39 39 H 1.09001 * 109.88778 * 170.50851 * 11 10 9 40 40 H 1.09001 * 109.88143 * 291.59686 * 11 10 9 41 41 H 1.09005 * 110.95456 * 280.95715 * 16 14 12 42 42 H 1.09003 * 110.95296 * 157.23057 * 16 14 12 43 43 H 1.08994 * 109.91566 * 218.17405 * 17 16 14 44 44 H 1.08993 * 110.08351 * 96.96149 * 17 16 14 45 45 H 0.97000 * 120.00625 * 180.02562 * 22 21 19 46 46 H 1.09005 * 110.07253 * 351.29582 * 27 9 7 47 47 H 1.09002 * 110.06803 * 112.87043 * 27 9 7 48 48 H 1.08004 * 120.43344 * 179.75773 * 28 6 5 49 49 H 1.08008 * 119.50951 * 180.22822 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3514 1.5251 -0.0005 5 6 3.8739 2.8121 -0.0011 6 6 5.2596 2.9786 0.0042 7 6 5.8631 4.3318 0.0099 8 8 6.8654 4.5527 -0.6406 9 7 5.3005 5.3175 0.7367 10 6 4.1694 5.0143 1.6185 11 6 4.3909 5.6279 3.0130 12 6 4.7411 7.0886 2.8134 13 1 3.9786 7.5599 2.1935 14 6 6.1002 7.1527 2.0632 15 1 6.8556 6.5371 2.5515 16 6 6.4207 8.6495 2.2070 17 6 5.9446 8.9396 3.6564 18 7 4.9552 7.8935 4.0060 19 6 4.3543 7.7178 5.2238 20 1 3.6432 6.9172 5.3646 21 6 4.6582 8.5693 6.2771 22 7 5.5244 9.5454 6.1054 23 14 3.8379 8.3301 7.9382 24 1 2.9111 7.1718 7.8704 25 1 4.8748 8.0752 8.9702 26 1 3.0752 9.5535 8.2944 27 6 5.8334 6.6919 0.6415 28 6 6.0638 1.8331 -0.0015 29 6 5.4633 0.5908 -0.0014 30 7 4.1496 0.4717 -0.0009 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.2181 3.6703 -0.0007 37 1 3.2566 5.4243 1.1863 38 1 4.0673 3.9333 1.7136 39 1 3.4793 5.5429 3.6045 40 1 5.2104 5.1159 3.5174 41 1 5.8560 9.2402 1.4856 42 1 7.4907 8.8306 2.1046 43 1 5.4774 9.9232 3.7039 44 1 6.7894 8.8963 4.3436 45 1 5.7371 10.1402 6.8414 46 1 6.7607 6.6947 0.0685 47 1 5.0994 7.3459 0.1707 48 1 7.1403 1.9204 -0.0016 49 1 6.0781 -0.2972 -0.0021 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036817549.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:21 Heat of formation + Delta-G solvation = 4.374387 kcal Electronic energy + Delta-G solvation = -30775.406001 eV Core-core repulsion = 26704.060387 eV Total energy + Delta-G solvation = -4071.345614 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.25801 -40.08530 -38.56911 -37.87670 -35.55943 -33.33662 -32.40624 -32.37568 -31.63524 -30.25373 -29.60515 -28.15797 -25.75508 -24.71318 -23.76813 -23.59347 -22.53573 -22.38579 -20.43610 -20.03293 -19.47187 -18.25029 -17.18639 -16.95923 -16.59140 -16.26955 -16.20155 -15.84349 -15.18464 -15.00288 -14.55178 -14.36215 -14.21824 -14.18012 -13.88505 -13.65901 -13.21408 -13.04973 -12.92454 -12.75534 -12.59721 -12.46941 -12.27190 -11.84342 -11.69974 -11.53328 -11.43774 -11.08095 -10.90689 -10.83623 -10.76926 -10.44772 -10.17098 -10.13354 -10.05306 -9.92537 -9.70769 -9.63374 -9.47334 -8.79800 -8.65196 -8.62954 -6.86529 -5.74198 -3.07503 0.52418 0.86095 2.54169 2.67743 2.93266 3.37594 3.42939 3.45511 3.50505 3.94595 4.21458 4.46681 4.62797 4.68377 4.69044 4.75248 4.83981 4.97288 4.99926 5.05853 5.18912 5.28553 5.30809 5.34014 5.45866 5.50639 5.52204 5.53278 5.56934 5.71100 5.75982 5.79159 5.85587 5.97160 6.01431 6.09973 6.13900 6.19064 6.29890 6.43171 6.57596 6.60547 6.77008 6.93591 7.02571 7.30939 7.49021 7.53046 7.58995 7.78999 7.99940 8.21698 9.16707 9.80293 10.48090 11.38356 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011647 B = 0.002934 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.461841 B = 9541.586622 C =11202.312100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.067 3.933 3 O -0.305 6.305 4 C 0.321 3.679 5 C -0.162 4.162 6 C -0.043 4.043 7 C 0.557 3.443 8 O -0.532 6.532 9 N -0.595 5.595 10 C 0.100 3.900 11 C -0.129 4.129 12 C 0.167 3.833 13 H 0.020 0.980 14 C -0.126 4.126 15 H 0.080 0.920 16 C -0.135 4.135 17 C 0.176 3.824 18 N -0.594 5.594 19 C -0.226 4.226 20 H 0.079 0.921 21 C -0.008 4.008 22 N -0.921 5.921 23 Si 0.909 3.091 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.127 3.873 28 C -0.161 4.161 29 C 0.138 3.862 30 N -0.530 5.530 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.152 0.848 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.038 0.962 44 H 0.055 0.945 45 H 0.252 0.748 46 H 0.092 0.908 47 H 0.073 0.927 48 H 0.147 0.853 49 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.413 -17.014 -14.186 22.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.008 4.008 3 O -0.212 6.212 4 C 0.142 3.858 5 C -0.183 4.183 6 C -0.054 4.054 7 C 0.344 3.656 8 O -0.410 6.410 9 N -0.327 5.327 10 C -0.022 4.022 11 C -0.168 4.168 12 C 0.059 3.941 13 H 0.038 0.962 14 C -0.147 4.147 15 H 0.099 0.901 16 C -0.174 4.174 17 C 0.052 3.948 18 N -0.319 5.319 19 C -0.354 4.354 20 H 0.097 0.903 21 C -0.204 4.204 22 N -0.568 5.568 23 Si 0.740 3.260 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C 0.005 3.995 28 C -0.182 4.182 29 C -0.017 4.017 30 N -0.254 5.254 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.170 0.830 37 H 0.088 0.912 38 H 0.104 0.896 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.057 0.943 44 H 0.074 0.926 45 H 0.062 0.938 46 H 0.110 0.890 47 H 0.091 0.909 48 H 0.165 0.835 49 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -4.529 -17.379 -14.281 22.946 hybrid contribution -0.049 0.513 1.061 1.179 sum -4.578 -16.867 -13.221 21.914 Atomic orbital electron populations 1.21830 0.92906 1.02928 1.03513 1.22623 0.94830 0.80851 1.02534 1.86255 1.16431 1.30868 1.87645 1.19599 0.84255 0.89426 0.92543 1.21386 0.94589 0.96653 1.05663 1.20168 0.92844 0.94659 0.97694 1.18192 0.83523 0.83763 0.80128 1.90778 1.24104 1.82373 1.43721 1.48234 1.33449 1.08892 1.42077 1.22206 0.87944 1.01074 0.91020 1.21896 1.02877 0.97686 0.94360 1.20642 0.93502 0.90367 0.89598 0.96245 1.22576 1.00056 0.97596 0.94431 0.90146 1.22712 1.00273 0.94025 1.00377 1.21542 0.92726 0.91645 0.88887 1.44205 1.48893 1.31773 1.06992 1.19036 1.18572 1.11776 0.85992 0.90322 1.24795 0.99533 0.97903 0.98205 1.69946 1.36567 1.19402 1.30929 0.86082 0.78490 0.77305 0.84114 1.20520 1.21798 1.21769 1.21608 0.99859 0.80017 0.97973 1.22075 1.01912 0.91755 1.02432 1.22392 0.88898 0.97201 0.93217 1.67203 1.06869 1.33296 1.18080 0.91608 0.90281 0.91444 0.91624 0.91486 0.83036 0.91184 0.89596 0.90318 0.91341 0.92279 0.91986 0.94337 0.92647 0.93787 0.88970 0.90896 0.83520 0.81616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.28 37.15 0.38 -0.57 16 2 C 0.07 0.55 6.03 37.15 0.22 0.78 16 3 O -0.30 -3.31 10.11 -18.74 -0.19 -3.50 16 4 C 0.32 3.68 7.49 -17.16 -0.13 3.55 16 5 C -0.16 -1.84 7.44 -38.84 -0.29 -2.13 16 6 C -0.04 -0.53 5.11 -104.68 -0.54 -1.06 16 7 C 0.56 8.12 7.37 -12.18 -0.09 8.03 16 8 O -0.53 -9.19 16.29 5.35 0.09 -9.11 16 9 N -0.59 -8.43 3.01 -173.74 -0.52 -8.95 16 10 C 0.10 1.32 4.74 -3.50 -0.02 1.30 16 11 C -0.13 -2.14 5.48 -26.98 -0.15 -2.29 16 12 C 0.17 3.24 2.58 -67.98 -0.18 3.07 16 13 H 0.02 0.40 7.90 -51.93 -0.41 -0.01 16 14 C -0.13 -2.19 2.84 -89.58 -0.25 -2.45 16 15 H 0.08 1.52 8.12 -51.93 -0.42 1.10 16 16 C -0.13 -2.45 6.54 -25.13 -0.16 -2.61 16 17 C 0.18 4.17 5.46 -1.91 -0.01 4.16 16 18 N -0.59 -14.54 3.35 -163.09 -0.55 -15.09 16 19 C -0.23 -6.05 9.88 -15.06 -0.15 -6.20 16 20 H 0.08 2.03 7.21 -52.48 -0.38 1.65 16 21 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 22 N -0.92 -26.69 10.43 55.49 0.58 -26.11 16 23 Si 0.91 21.77 29.55 -169.99 -5.02 16.74 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 C 0.13 1.87 5.94 -3.98 -0.02 1.85 16 28 C -0.16 -1.71 9.75 -39.03 -0.38 -2.09 16 29 C 0.14 1.29 11.17 -17.61 -0.20 1.09 16 30 N -0.53 -5.80 9.18 -13.38 -0.12 -5.92 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 35 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 36 H 0.15 1.57 6.33 -52.48 -0.33 1.24 16 37 H 0.07 0.82 7.85 -51.93 -0.41 0.41 16 38 H 0.09 1.02 4.86 -51.93 -0.25 0.77 16 39 H 0.08 1.32 7.62 -51.93 -0.40 0.93 16 40 H 0.07 1.22 8.12 -51.93 -0.42 0.79 16 41 H 0.06 0.98 8.12 -51.93 -0.42 0.56 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.04 1.00 7.77 -51.93 -0.40 0.60 16 44 H 0.06 1.47 7.20 -51.93 -0.37 1.09 16 45 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 46 H 0.09 1.39 6.98 -51.93 -0.36 1.03 16 47 H 0.07 1.00 8.06 -51.93 -0.42 0.58 16 48 H 0.15 1.42 8.06 -52.48 -0.42 1.00 16 49 H 0.17 0.98 8.06 -52.48 -0.42 0.56 16 LS Contribution 386.18 15.07 5.82 5.82 Total: -1.00 -32.04 386.18 -9.48 -41.52 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -7.51 Total: 0.48 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: -2.05 Total: 4.12 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: -0.61 Total: -56.08 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: -0.10 Total: -12.61 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.04 -9.48 -41.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036817549.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.898 kcal (2) G-P(sol) polarization free energy of solvation -32.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds