Wall clock time and date at job start Wed Apr 1 2020 05:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42905 * 109.47120 * 2 1 4 4 C 1.35680 * 117.00114 * 180.02562 * 3 2 1 5 5 C 1.38896 * 119.62600 * 179.97438 * 4 3 2 6 6 C 1.39570 * 118.94999 * 179.72456 * 5 4 3 7 7 C 1.48165 * 120.89395 * 180.27454 * 6 5 4 8 8 O 1.21515 * 119.99701 * 218.46803 * 7 6 5 9 9 N 1.34776 * 119.99861 * 38.46838 * 7 6 5 10 10 C 1.46591 * 119.68479 * 5.84232 * 9 7 6 11 11 C 1.53948 * 110.57808 * 132.15032 * 10 9 7 12 12 C 1.51527 * 107.34649 * 51.05216 * 11 10 9 13 13 H 1.08994 * 109.27338 * 53.02555 * 12 11 10 14 14 C 1.55366 * 107.79164 * 295.14382 * 12 11 10 15 15 H 1.08997 * 111.50934 * 308.81169 * 14 12 11 16 16 C 1.53748 * 100.21836 * 190.91047 * 14 12 11 17 17 C 1.55292 * 101.84081 * 39.09468 * 16 14 12 18 18 N 1.45465 * 117.35144 * 178.08970 * 12 11 10 19 19 C 1.36927 * 126.40845 * 329.34810 * 18 12 11 20 20 H 1.08004 * 120.00339 * 359.97438 * 19 18 12 21 21 C 1.38812 * 120.00286 * 180.02562 * 19 18 12 22 22 N 1.31620 * 119.99956 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00463 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47007 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47191 * 119.99613 * 23 21 19 26 26 H 1.48499 * 109.47105 * 239.99871 * 23 21 19 27 27 C 1.47714 * 119.67990 * 185.56435 * 9 7 6 28 28 C 1.39966 * 118.21365 * 0.53090 * 6 5 4 29 29 C 1.37978 * 119.13413 * 359.49054 * 28 6 5 30 30 N 1.31907 * 120.97888 * 0.24790 * 29 28 6 31 31 H 1.09000 * 109.47434 * 59.99872 * 1 2 3 32 32 H 1.08997 * 109.47336 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46798 * 299.99601 * 1 2 3 34 34 H 1.08999 * 109.47200 * 240.00067 * 2 1 3 35 35 H 1.09000 * 109.47434 * 120.00128 * 2 1 3 36 36 H 1.08007 * 120.52110 * 0.02562 * 5 4 3 37 37 H 1.09003 * 109.25487 * 252.43316 * 10 9 7 38 38 H 1.08998 * 109.25956 * 11.86224 * 10 9 7 39 39 H 1.09001 * 109.88778 * 170.50851 * 11 10 9 40 40 H 1.09001 * 109.88143 * 291.59686 * 11 10 9 41 41 H 1.09005 * 110.95456 * 280.95715 * 16 14 12 42 42 H 1.09003 * 110.95296 * 157.23057 * 16 14 12 43 43 H 1.08994 * 109.91566 * 218.17405 * 17 16 14 44 44 H 1.08993 * 110.08351 * 96.96149 * 17 16 14 45 45 H 0.97000 * 120.00625 * 180.02562 * 22 21 19 46 46 H 1.09005 * 110.07253 * 351.29582 * 27 9 7 47 47 H 1.09002 * 110.06803 * 112.87043 * 27 9 7 48 48 H 1.08004 * 120.43344 * 179.75773 * 28 6 5 49 49 H 1.08008 * 119.50951 * 180.22822 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3514 1.5251 -0.0005 5 6 3.8739 2.8121 -0.0011 6 6 5.2596 2.9786 0.0042 7 6 5.8631 4.3318 0.0099 8 8 6.8654 4.5527 -0.6406 9 7 5.3005 5.3175 0.7367 10 6 4.1694 5.0143 1.6185 11 6 4.3909 5.6279 3.0130 12 6 4.7411 7.0886 2.8134 13 1 3.9786 7.5599 2.1935 14 6 6.1002 7.1527 2.0632 15 1 6.8556 6.5371 2.5515 16 6 6.4207 8.6495 2.2070 17 6 5.9446 8.9396 3.6564 18 7 4.9552 7.8935 4.0060 19 6 4.3543 7.7178 5.2238 20 1 3.6432 6.9172 5.3646 21 6 4.6582 8.5693 6.2771 22 7 5.5244 9.5454 6.1054 23 14 3.8379 8.3301 7.9382 24 1 2.9111 7.1718 7.8704 25 1 4.8748 8.0752 8.9702 26 1 3.0752 9.5535 8.2944 27 6 5.8334 6.6919 0.6415 28 6 6.0638 1.8331 -0.0015 29 6 5.4633 0.5908 -0.0014 30 7 4.1496 0.4717 -0.0009 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.2181 3.6703 -0.0007 37 1 3.2566 5.4243 1.1863 38 1 4.0673 3.9333 1.7136 39 1 3.4793 5.5429 3.6045 40 1 5.2104 5.1159 3.5174 41 1 5.8560 9.2402 1.4856 42 1 7.4907 8.8306 2.1046 43 1 5.4774 9.9232 3.7039 44 1 6.7894 8.8963 4.3436 45 1 5.7371 10.1402 6.8414 46 1 6.7607 6.6947 0.0685 47 1 5.0994 7.3459 0.1707 48 1 7.1403 1.9204 -0.0016 49 1 6.0781 -0.2972 -0.0021 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036817549.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:19 Heat of formation + Delta-G solvation = -16.229650 kcal Electronic energy + Delta-G solvation = -30776.299459 eV Core-core repulsion = 26704.060387 eV Total energy + Delta-G solvation = -4072.239072 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.20570 -41.17678 -39.84131 -38.80679 -36.96595 -34.77608 -33.74095 -33.07576 -33.00815 -31.35931 -30.91589 -29.66955 -27.00375 -26.28966 -24.78419 -24.53611 -23.70360 -23.42379 -21.91890 -21.45230 -20.76333 -19.30842 -18.46167 -18.09984 -17.62888 -17.29626 -17.15148 -16.99419 -16.74085 -16.27738 -15.96213 -15.66164 -15.42606 -15.02217 -14.95038 -14.83121 -14.62940 -14.29586 -14.16246 -13.89931 -13.47074 -13.33760 -13.32787 -13.20330 -13.10757 -12.97099 -12.73038 -12.48607 -12.44815 -12.17594 -11.97103 -11.82010 -11.70905 -11.63440 -11.54582 -11.41321 -11.07740 -10.91453 -10.71711 -10.61529 -9.83486 -9.57281 -8.87107 -7.83359 -5.17617 -0.35482 0.06472 1.46238 1.46510 1.50753 1.56513 1.72448 2.02338 2.50350 2.67113 3.12659 3.30159 3.35605 3.48660 3.73712 3.80885 3.87902 3.94294 3.99587 4.05309 4.12571 4.15888 4.18889 4.20268 4.36659 4.46437 4.49045 4.55733 4.63790 4.63957 4.70232 4.75816 4.79560 4.85666 4.86756 4.95590 4.98700 5.05578 5.08371 5.19182 5.21647 5.31661 5.40174 5.51778 5.53243 5.66506 5.77559 6.17542 6.19153 6.21340 6.70518 6.87436 7.09849 7.79967 8.48398 9.28680 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011647 B = 0.002934 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.461841 B = 9541.586622 C =11202.312100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.315 6.315 4 C 0.312 3.688 5 C -0.164 4.164 6 C -0.057 4.057 7 C 0.560 3.440 8 O -0.563 6.563 9 N -0.596 5.596 10 C 0.111 3.889 11 C -0.123 4.123 12 C 0.157 3.843 13 H 0.027 0.973 14 C -0.111 4.111 15 H 0.061 0.939 16 C -0.120 4.120 17 C 0.181 3.819 18 N -0.615 5.615 19 C -0.227 4.227 20 H 0.088 0.912 21 C -0.071 4.071 22 N -0.954 5.954 23 Si 0.973 3.027 24 H -0.263 1.263 25 H -0.296 1.296 26 H -0.295 1.295 27 C 0.135 3.865 28 C -0.164 4.164 29 C 0.147 3.853 30 N -0.537 5.537 31 H 0.065 0.935 32 H 0.099 0.901 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.160 0.840 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.077 0.923 40 H 0.051 0.949 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.005 0.995 44 H 0.016 0.984 45 H 0.244 0.756 46 H 0.093 0.907 47 H 0.093 0.907 48 H 0.154 0.846 49 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.667 -19.386 -15.615 25.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.223 6.223 4 C 0.133 3.867 5 C -0.185 4.185 6 C -0.067 4.067 7 C 0.348 3.652 8 O -0.442 6.442 9 N -0.327 5.327 10 C -0.011 4.011 11 C -0.162 4.162 12 C 0.050 3.950 13 H 0.045 0.955 14 C -0.131 4.131 15 H 0.079 0.921 16 C -0.159 4.159 17 C 0.056 3.944 18 N -0.340 5.340 19 C -0.356 4.356 20 H 0.105 0.895 21 C -0.263 4.263 22 N -0.604 5.604 23 Si 0.802 3.198 24 H -0.187 1.187 25 H -0.224 1.224 26 H -0.222 1.222 27 C 0.013 3.987 28 C -0.185 4.185 29 C -0.009 4.009 30 N -0.261 5.261 31 H 0.084 0.916 32 H 0.117 0.883 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.178 0.822 37 H 0.111 0.889 38 H 0.120 0.880 39 H 0.095 0.905 40 H 0.070 0.930 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.023 0.977 44 H 0.034 0.966 45 H 0.054 0.946 46 H 0.111 0.889 47 H 0.111 0.889 48 H 0.172 0.828 49 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -5.819 -19.790 -15.737 25.945 hybrid contribution 0.342 1.180 1.475 1.920 sum -5.477 -18.610 -14.262 24.078 Atomic orbital electron populations 1.21847 0.91352 1.04214 1.03309 1.22815 0.96046 0.79839 1.02538 1.86247 1.16179 1.32316 1.87531 1.19735 0.84672 0.89606 0.92685 1.21399 0.94236 0.97091 1.05756 1.20049 0.93468 0.93799 0.99425 1.18483 0.82933 0.84412 0.79376 1.90761 1.25502 1.82962 1.45019 1.48256 1.33591 1.08674 1.42154 1.22207 0.88290 1.01912 0.88719 1.21812 1.02064 0.95686 0.96620 1.20888 0.94759 0.91439 0.87906 0.95536 1.22402 0.98182 0.96655 0.95897 0.92053 1.22580 1.01471 0.94952 0.96859 1.21317 0.91102 0.90348 0.91647 1.44491 1.48792 1.32867 1.07826 1.19441 1.17991 1.11208 0.87008 0.89474 1.25615 1.00768 0.98219 1.01715 1.70169 1.38374 1.20481 1.31377 0.85079 0.77505 0.77414 0.79812 1.18667 1.22384 1.22203 1.21509 1.00699 0.80735 0.95766 1.22271 1.02302 0.91818 1.02100 1.22944 0.88607 0.97939 0.91393 1.67290 1.07499 1.33238 1.18102 0.91617 0.88267 0.91786 0.91452 0.91594 0.82210 0.88880 0.87993 0.90470 0.92999 0.90031 0.90382 0.97685 0.96558 0.94629 0.88897 0.88923 0.82831 0.78122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 10.28 71.98 0.74 -0.81 16 2 C 0.06 0.92 6.03 71.98 0.43 1.35 16 3 O -0.32 -6.27 10.11 -89.98 -0.91 -7.18 16 4 C 0.31 6.50 7.49 84.80 0.63 7.13 16 5 C -0.16 -3.36 7.44 22.75 0.17 -3.19 16 6 C -0.06 -1.28 5.11 -19.90 -0.10 -1.38 16 7 C 0.56 15.34 7.37 86.88 0.64 15.98 16 8 O -0.56 -18.72 16.29 -3.76 -0.06 -18.78 16 9 N -0.60 -15.64 3.01 -821.90 -2.47 -18.11 16 10 C 0.11 2.64 4.74 86.68 0.41 3.05 16 11 C -0.12 -3.92 5.48 30.43 0.17 -3.75 16 12 C 0.16 5.96 2.58 45.52 0.12 6.08 16 13 H 0.03 1.01 7.90 -2.39 -0.02 0.99 16 14 C -0.11 -3.75 2.84 -10.12 -0.03 -3.78 16 15 H 0.06 2.32 8.12 -2.39 -0.02 2.30 16 16 C -0.12 -4.28 6.54 31.63 0.21 -4.07 16 17 C 0.18 8.86 5.46 86.85 0.47 9.34 16 18 N -0.62 -30.61 3.35 -669.91 -2.24 -32.85 16 19 C -0.23 -12.35 9.88 84.04 0.83 -11.52 16 20 H 0.09 4.46 7.21 -2.91 -0.02 4.44 16 21 C -0.07 -4.00 5.49 84.86 0.47 -3.53 16 22 N -0.95 -57.64 10.43 21.65 0.23 -57.42 16 23 Si 0.97 45.53 29.55 68.60 2.03 47.55 16 24 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 25 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 26 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 27 C 0.13 3.69 5.94 85.76 0.51 4.20 16 28 C -0.16 -3.13 9.75 22.63 0.22 -2.91 16 29 C 0.15 2.32 11.17 84.62 0.94 3.27 16 30 N -0.54 -10.45 9.18 -309.14 -2.84 -13.29 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.10 0.61 8.14 -2.39 -0.02 0.60 16 33 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.07 0.96 8.10 -2.39 -0.02 0.94 16 35 H 0.07 0.97 8.10 -2.39 -0.02 0.95 16 36 H 0.16 2.90 6.33 -2.91 -0.02 2.88 16 37 H 0.09 1.86 7.85 -2.39 -0.02 1.84 16 38 H 0.10 2.17 4.86 -2.39 -0.01 2.16 16 39 H 0.08 2.49 7.62 -2.39 -0.02 2.47 16 40 H 0.05 1.82 8.12 -2.39 -0.02 1.80 16 41 H 0.08 2.56 8.12 -2.38 -0.02 2.54 16 42 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 43 H 0.00 0.27 7.77 -2.39 -0.02 0.25 16 44 H 0.02 0.90 7.20 -2.39 -0.02 0.89 16 45 H 0.24 14.42 8.31 -92.71 -0.77 13.65 16 46 H 0.09 2.61 6.98 -2.38 -0.02 2.59 16 47 H 0.09 2.23 8.06 -2.39 -0.02 2.21 16 48 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 49 H 0.20 1.63 8.06 -2.91 -0.02 1.60 16 Total: -1.00 -71.65 386.18 1.51 -70.14 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 0.95 Total: 14.48 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: 6.83 Total: 15.45 kcal Atomic # 7 Polarization: -114.34 SS G_CDS: -7.33 Total: -121.67 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.97 Total: -25.96 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Total: -71.65 1.51 -70.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036817549.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.908 kcal (2) G-P(sol) polarization free energy of solvation -71.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds