Wall clock time and date at job start Wed Apr 1 2020 05:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42898 * 109.47219 * 2 1 4 4 C 1.35426 * 116.99946 * 180.02562 * 3 2 1 5 5 N 1.32231 * 119.79963 * 0.02562 * 4 3 2 6 6 C 1.31886 * 121.79778 * 179.97438 * 5 4 3 7 7 C 1.38355 * 121.18707 * 0.02562 * 6 5 4 8 8 C 1.38333 * 119.45841 * 359.73388 * 7 6 5 9 9 C 1.39992 * 118.34965 * 0.50382 * 8 7 6 10 10 C 1.47519 * 120.59667 * 179.77614 * 9 8 7 11 11 O 1.21593 * 119.99804 * 126.35547 * 10 9 8 12 12 N 1.34779 * 120.00151 * 306.34594 * 10 9 8 13 13 C 1.46593 * 119.68480 * 354.15821 * 12 10 9 14 14 C 1.53957 * 110.57859 * 227.79851 * 13 12 10 15 15 C 1.51526 * 107.34314 * 308.94761 * 14 13 12 16 16 H 1.09000 * 109.27866 * 306.29536 * 15 14 13 17 17 C 1.55359 * 107.79173 * 64.85333 * 15 14 13 18 18 H 1.09004 * 111.51110 * 50.61718 * 17 15 14 19 19 C 1.53740 * 100.22075 * 168.51294 * 17 15 14 20 20 C 1.55294 * 101.87658 * 320.89047 * 19 17 15 21 21 N 1.45467 * 116.86236 * 181.60672 * 15 14 13 22 22 C 1.36929 * 126.41137 * 30.87911 * 21 15 14 23 23 H 1.08001 * 119.99833 * 0.02562 * 22 21 15 24 24 C 1.38809 * 120.00223 * 179.97438 * 22 21 15 25 25 N 1.31614 * 120.00313 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 120.00034 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46949 * 90.00097 * 26 24 22 28 28 H 1.48502 * 109.47214 * 210.00018 * 26 24 22 29 29 H 1.48500 * 109.47124 * 330.00202 * 26 24 22 30 30 C 1.48916 * 119.82209 * 173.81209 * 12 10 9 31 31 H 1.08993 * 109.46873 * 300.00466 * 1 2 3 32 32 H 1.09003 * 109.46684 * 59.99931 * 1 2 3 33 33 H 1.08999 * 109.46999 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.47122 * 240.00016 * 2 1 3 35 35 H 1.08997 * 109.47064 * 119.99826 * 2 1 3 36 36 H 1.08003 * 119.40590 * 180.02562 * 6 5 4 37 37 H 1.07998 * 120.26855 * 180.02562 * 7 6 5 38 38 H 1.07998 * 120.82633 * 180.25689 * 8 7 6 39 39 H 1.09001 * 109.25583 * 107.51197 * 13 12 10 40 40 H 1.09001 * 109.25317 * 348.07986 * 13 12 10 41 41 H 1.08993 * 109.88024 * 189.48776 * 14 13 12 42 42 H 1.08997 * 109.93843 * 68.43684 * 14 13 12 43 43 H 1.08999 * 110.95499 * 79.04174 * 19 17 15 44 44 H 1.09002 * 110.96165 * 202.73599 * 19 17 15 45 45 H 1.09002 * 109.92020 * 141.84174 * 20 19 17 46 46 H 1.08995 * 109.91689 * 263.14935 * 20 19 17 47 47 H 0.97000 * 120.00471 * 180.02562 * 25 24 22 48 48 H 1.08999 * 109.91621 * 8.97689 * 30 12 10 49 49 H 1.08999 * 110.80742 * 247.01834 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3490 1.5247 -0.0005 5 7 4.1508 0.4732 -0.0015 6 6 5.4635 0.6002 -0.0026 7 6 6.0626 1.8474 -0.0022 8 6 5.2714 2.9821 -0.0062 9 6 3.8806 2.8229 0.0002 10 6 2.9902 3.9990 0.0013 11 8 2.1218 4.1049 -0.8433 12 7 3.1390 4.9561 0.9385 13 6 4.1000 4.7619 2.0282 14 6 3.4540 5.0953 3.3854 15 6 2.8183 6.4649 3.2587 16 1 3.5632 7.1757 2.9008 17 6 1.6700 6.3608 2.2174 18 1 1.0021 5.5287 2.4408 19 6 0.9732 7.7125 2.4436 20 6 1.0533 7.8589 3.9875 21 7 2.1733 7.0026 4.4465 22 6 2.5328 6.7625 5.7457 23 1 3.3713 6.1176 5.9637 24 6 1.8203 7.3488 6.7827 25 7 0.7988 8.1351 6.5173 26 14 2.3112 7.0219 8.5552 27 1 3.3006 8.0401 8.9906 28 1 1.1090 7.0967 9.4237 29 1 2.9144 5.6689 8.6603 30 6 2.3327 6.2054 0.8557 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 6.0820 -0.2852 -0.0038 37 1 7.1391 1.9342 -0.0035 38 1 5.7157 3.9665 -0.0101 39 1 4.9597 5.4130 1.8697 40 1 4.4323 3.7238 2.0337 41 1 4.2159 5.1109 4.1647 42 1 2.6923 4.3540 3.6265 43 1 1.5144 8.5179 1.9471 44 1 -0.0635 7.6777 2.1087 45 1 1.2472 8.8983 4.2524 46 1 0.1202 7.5250 4.4411 47 1 0.3011 8.5452 7.2419 48 1 1.5739 6.1068 0.0795 49 1 2.9705 7.0649 0.6499 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036883794.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:48 Heat of formation + Delta-G solvation = 1.458743 kcal Electronic energy + Delta-G solvation = -31333.281353 eV Core-core repulsion = 27261.809308 eV Total energy + Delta-G solvation = -4071.472046 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.18130 -39.77911 -38.26527 -38.02989 -35.32416 -33.20246 -32.42880 -32.25125 -31.52875 -30.40369 -29.40304 -28.06333 -25.39054 -24.64985 -24.20428 -23.02024 -22.50303 -22.26375 -20.25361 -19.92699 -19.27438 -18.62415 -17.36380 -17.13805 -16.51942 -16.30429 -15.86855 -15.47589 -15.12968 -14.79711 -14.36571 -14.14552 -14.10570 -14.02106 -13.81947 -13.58429 -13.13253 -12.99960 -12.77864 -12.65134 -12.49794 -12.48885 -12.39679 -11.69275 -11.65263 -11.48020 -11.41032 -10.96202 -10.85323 -10.79415 -10.73015 -10.31768 -10.16934 -10.12037 -10.03666 -9.87195 -9.62361 -9.57266 -9.43849 -8.74178 -8.62748 -8.48290 -6.83895 -5.71749 -3.04902 0.58929 0.98444 2.66516 2.81418 3.01443 3.38907 3.43762 3.45931 3.50557 3.96933 4.44411 4.49525 4.52078 4.70017 4.82766 4.84567 4.93913 5.02402 5.04895 5.16370 5.19596 5.28728 5.35726 5.48992 5.53352 5.56710 5.58974 5.62926 5.68226 5.75718 5.81792 5.89700 5.91423 6.03206 6.08538 6.16123 6.19061 6.24184 6.35532 6.49376 6.62991 6.66051 6.83843 7.03855 7.08336 7.43668 7.54534 7.55438 7.62114 7.81066 8.22887 8.24190 9.19007 9.82772 10.51080 11.40793 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012593 B = 0.003016 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.984366 B = 9281.310920 C = 9452.550003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.066 3.934 3 O -0.287 6.287 4 C 0.366 3.634 5 N -0.543 5.543 6 C 0.157 3.843 7 C -0.217 4.217 8 C -0.009 4.009 9 C -0.196 4.196 10 C 0.570 3.430 11 O -0.529 6.529 12 N -0.603 5.603 13 C 0.111 3.889 14 C -0.129 4.129 15 C 0.168 3.832 16 H 0.021 0.979 17 C -0.124 4.124 18 H 0.080 0.920 19 C -0.136 4.136 20 C 0.177 3.823 21 N -0.595 5.595 22 C -0.226 4.226 23 H 0.078 0.922 24 C -0.008 4.008 25 N -0.921 5.921 26 Si 0.909 3.091 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.282 1.282 30 C 0.130 3.870 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.163 0.837 37 H 0.144 0.856 38 H 0.146 0.854 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.038 0.962 46 H 0.054 0.946 47 H 0.252 0.748 48 H 0.090 0.910 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.644 -13.597 -14.813 21.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.009 4.009 3 O -0.193 6.193 4 C 0.186 3.814 5 N -0.267 5.267 6 C 0.000 4.000 7 C -0.238 4.238 8 C -0.035 4.035 9 C -0.203 4.203 10 C 0.356 3.644 11 O -0.406 6.406 12 N -0.336 5.336 13 C -0.012 4.012 14 C -0.168 4.168 15 C 0.060 3.940 16 H 0.038 0.962 17 C -0.144 4.144 18 H 0.099 0.901 19 C -0.175 4.175 20 C 0.053 3.947 21 N -0.320 5.320 22 C -0.354 4.354 23 H 0.096 0.904 24 C -0.204 4.204 25 N -0.568 5.568 26 Si 0.740 3.260 27 H -0.216 1.216 28 H -0.217 1.217 29 H -0.207 1.207 30 C 0.008 3.992 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.180 0.820 37 H 0.162 0.838 38 H 0.164 0.836 39 H 0.083 0.917 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.086 0.914 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.056 0.944 46 H 0.073 0.927 47 H 0.062 0.938 48 H 0.109 0.891 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.456 -14.093 -15.003 21.893 hybrid contribution 0.786 0.403 1.157 1.456 sum 8.241 -13.690 -13.846 21.143 Atomic orbital electron populations 1.21820 0.92758 1.02754 1.03824 1.22674 0.95174 0.80735 1.02355 1.86360 1.16037 1.30746 1.86138 1.19691 0.84501 0.88360 0.88841 1.67442 1.06665 1.32340 1.20240 1.22613 0.89108 0.97644 0.90598 1.21911 1.01672 0.92876 1.07316 1.21616 0.90726 1.00273 0.90904 1.19926 0.94649 0.92587 1.13096 1.17837 0.83180 0.81751 0.81608 1.90777 1.33653 1.77552 1.38593 1.48511 1.41410 1.18317 1.25377 1.21851 0.91049 1.01294 0.87043 1.21890 1.00877 0.99311 0.94709 1.20642 0.92820 0.92249 0.88326 0.96215 1.22633 0.98555 0.98961 0.94282 0.90145 1.22720 0.99301 0.95281 1.00197 1.21547 0.91925 0.94725 0.86490 1.44240 1.33664 1.53814 1.00273 1.18984 1.11277 1.24421 0.80703 0.90425 1.24784 0.98003 0.99730 0.97883 1.69936 1.21476 1.35090 1.30343 0.86164 0.77296 0.77728 0.84839 1.21644 1.21713 1.20748 1.21847 0.94345 0.84289 0.98669 0.91404 0.91427 0.90283 0.91561 0.91510 0.81959 0.83835 0.83581 0.91660 0.90574 0.90552 0.91443 0.92333 0.92037 0.94357 0.92744 0.93764 0.89140 0.90936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 10.28 37.16 0.38 -1.09 16 2 C 0.07 0.74 6.03 37.16 0.22 0.96 16 3 O -0.29 -4.30 9.31 -21.59 -0.20 -4.50 16 4 C 0.37 5.12 7.49 -16.61 -0.12 4.99 16 5 N -0.54 -6.42 9.21 -12.98 -0.12 -6.54 16 6 C 0.16 1.35 11.17 -17.49 -0.20 1.15 16 7 C -0.22 -1.67 10.09 -39.50 -0.40 -2.07 16 8 C -0.01 -0.09 7.99 -38.89 -0.31 -0.40 16 9 C -0.20 -2.65 4.52 -104.69 -0.47 -3.13 16 10 C 0.57 9.14 6.84 -12.48 -0.09 9.05 16 11 O -0.53 -10.18 16.13 1.66 0.03 -10.16 16 12 N -0.60 -9.05 3.01 -172.72 -0.52 -9.57 16 13 C 0.11 1.49 5.34 -3.49 -0.02 1.47 16 14 C -0.13 -2.20 5.45 -26.98 -0.15 -2.35 16 15 C 0.17 3.33 2.57 -67.98 -0.17 3.15 16 16 H 0.02 0.41 7.93 -51.93 -0.41 -0.01 16 17 C -0.12 -2.24 2.84 -89.37 -0.25 -2.49 16 18 H 0.08 1.61 8.12 -51.93 -0.42 1.19 16 19 C -0.14 -2.53 6.53 -25.13 -0.16 -2.70 16 20 C 0.18 4.26 5.45 -1.85 -0.01 4.25 16 21 N -0.60 -14.79 3.35 -163.01 -0.55 -15.34 16 22 C -0.23 -6.11 9.86 -15.06 -0.15 -6.26 16 23 H 0.08 2.01 7.18 -52.49 -0.38 1.63 16 24 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 25 N -0.92 -26.88 10.44 55.49 0.58 -26.30 16 26 Si 0.91 21.88 29.55 -169.99 -5.02 16.85 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 28 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 29 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 30 C 0.13 2.01 6.05 -3.10 -0.02 1.99 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.69 8.10 -51.93 -0.42 0.26 16 35 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 36 H 0.16 0.82 8.06 -52.48 -0.42 0.40 16 37 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 38 H 0.15 1.15 7.77 -52.49 -0.41 0.74 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.08 0.93 5.52 -51.93 -0.29 0.64 16 41 H 0.08 1.30 7.59 -51.93 -0.39 0.91 16 42 H 0.07 1.26 8.11 -51.93 -0.42 0.84 16 43 H 0.06 0.99 8.11 -51.93 -0.42 0.57 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 45 H 0.04 1.01 7.77 -51.93 -0.40 0.60 16 46 H 0.05 1.46 7.21 -51.93 -0.37 1.09 16 47 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 48 H 0.09 1.45 7.01 -51.93 -0.36 1.09 16 49 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 LS Contribution 388.08 15.07 5.85 5.85 Total: -1.00 -33.78 388.08 -9.61 -43.39 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -7.64 Total: 0.10 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: -2.01 Total: 6.23 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: -0.61 Total: -57.76 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.17 Total: -14.66 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.78 -9.61 -43.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036883794.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.847 kcal (2) G-P(sol) polarization free energy of solvation -33.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds