Wall clock time and date at job start Wed Apr 1 2020 05:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42898 * 109.47219 * 2 1 4 4 C 1.35426 * 116.99946 * 180.02562 * 3 2 1 5 5 N 1.32231 * 119.79963 * 0.02562 * 4 3 2 6 6 C 1.31886 * 121.79778 * 179.97438 * 5 4 3 7 7 C 1.38355 * 121.18707 * 0.02562 * 6 5 4 8 8 C 1.38333 * 119.45841 * 359.73388 * 7 6 5 9 9 C 1.39992 * 118.34965 * 0.50382 * 8 7 6 10 10 C 1.47519 * 120.59667 * 179.77614 * 9 8 7 11 11 O 1.21593 * 119.99804 * 126.35547 * 10 9 8 12 12 N 1.34779 * 120.00151 * 306.34594 * 10 9 8 13 13 C 1.46593 * 119.68480 * 354.15821 * 12 10 9 14 14 C 1.53957 * 110.57859 * 227.79851 * 13 12 10 15 15 C 1.51526 * 107.34314 * 308.94761 * 14 13 12 16 16 H 1.09000 * 109.27866 * 306.29536 * 15 14 13 17 17 C 1.55359 * 107.79173 * 64.85333 * 15 14 13 18 18 H 1.09004 * 111.51110 * 50.61718 * 17 15 14 19 19 C 1.53740 * 100.22075 * 168.51294 * 17 15 14 20 20 C 1.55294 * 101.87658 * 320.89047 * 19 17 15 21 21 N 1.45467 * 116.86236 * 181.60672 * 15 14 13 22 22 C 1.36929 * 126.41137 * 30.87911 * 21 15 14 23 23 H 1.08001 * 119.99833 * 0.02562 * 22 21 15 24 24 C 1.38809 * 120.00223 * 179.97438 * 22 21 15 25 25 N 1.31614 * 120.00313 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 120.00034 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46949 * 90.00097 * 26 24 22 28 28 H 1.48502 * 109.47214 * 210.00018 * 26 24 22 29 29 H 1.48500 * 109.47124 * 330.00202 * 26 24 22 30 30 C 1.48916 * 119.82209 * 173.81209 * 12 10 9 31 31 H 1.08993 * 109.46873 * 300.00466 * 1 2 3 32 32 H 1.09003 * 109.46684 * 59.99931 * 1 2 3 33 33 H 1.08999 * 109.46999 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.47122 * 240.00016 * 2 1 3 35 35 H 1.08997 * 109.47064 * 119.99826 * 2 1 3 36 36 H 1.08003 * 119.40590 * 180.02562 * 6 5 4 37 37 H 1.07998 * 120.26855 * 180.02562 * 7 6 5 38 38 H 1.07998 * 120.82633 * 180.25689 * 8 7 6 39 39 H 1.09001 * 109.25583 * 107.51197 * 13 12 10 40 40 H 1.09001 * 109.25317 * 348.07986 * 13 12 10 41 41 H 1.08993 * 109.88024 * 189.48776 * 14 13 12 42 42 H 1.08997 * 109.93843 * 68.43684 * 14 13 12 43 43 H 1.08999 * 110.95499 * 79.04174 * 19 17 15 44 44 H 1.09002 * 110.96165 * 202.73599 * 19 17 15 45 45 H 1.09002 * 109.92020 * 141.84174 * 20 19 17 46 46 H 1.08995 * 109.91689 * 263.14935 * 20 19 17 47 47 H 0.97000 * 120.00471 * 180.02562 * 25 24 22 48 48 H 1.08999 * 109.91621 * 8.97689 * 30 12 10 49 49 H 1.08999 * 110.80742 * 247.01834 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3490 1.5247 -0.0005 5 7 4.1508 0.4732 -0.0015 6 6 5.4635 0.6002 -0.0026 7 6 6.0626 1.8474 -0.0022 8 6 5.2714 2.9821 -0.0062 9 6 3.8806 2.8229 0.0002 10 6 2.9902 3.9990 0.0013 11 8 2.1218 4.1049 -0.8433 12 7 3.1390 4.9561 0.9385 13 6 4.1000 4.7619 2.0282 14 6 3.4540 5.0953 3.3854 15 6 2.8183 6.4649 3.2587 16 1 3.5632 7.1757 2.9008 17 6 1.6700 6.3608 2.2174 18 1 1.0021 5.5287 2.4408 19 6 0.9732 7.7125 2.4436 20 6 1.0533 7.8589 3.9875 21 7 2.1733 7.0026 4.4465 22 6 2.5328 6.7625 5.7457 23 1 3.3713 6.1176 5.9637 24 6 1.8203 7.3488 6.7827 25 7 0.7988 8.1351 6.5173 26 14 2.3112 7.0219 8.5552 27 1 3.3006 8.0401 8.9906 28 1 1.1090 7.0967 9.4237 29 1 2.9144 5.6689 8.6603 30 6 2.3327 6.2054 0.8557 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 6.0820 -0.2852 -0.0038 37 1 7.1391 1.9342 -0.0035 38 1 5.7157 3.9665 -0.0101 39 1 4.9597 5.4130 1.8697 40 1 4.4323 3.7238 2.0337 41 1 4.2159 5.1109 4.1647 42 1 2.6923 4.3540 3.6265 43 1 1.5144 8.5179 1.9471 44 1 -0.0635 7.6777 2.1087 45 1 1.2472 8.8983 4.2524 46 1 0.1202 7.5250 4.4411 47 1 0.3011 8.5452 7.2419 48 1 1.5739 6.1068 0.0795 49 1 2.9705 7.0649 0.6499 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036883794.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:47 Heat of formation + Delta-G solvation = -21.258512 kcal Electronic energy + Delta-G solvation = -31334.266447 eV Core-core repulsion = 27261.809308 eV Total energy + Delta-G solvation = -4072.457140 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.12180 -41.01616 -39.55331 -39.04541 -36.78799 -34.68720 -33.65950 -33.07234 -33.01274 -31.50844 -30.83926 -29.60263 -26.81619 -26.02628 -25.20605 -24.18265 -23.78628 -23.23155 -21.91055 -21.38501 -20.57912 -19.50034 -18.78140 -18.04784 -17.91167 -17.44317 -17.01968 -16.94747 -16.21504 -16.19127 -15.85510 -15.61280 -15.19449 -15.03300 -14.95181 -14.64835 -14.59934 -14.22414 -14.07255 -13.82176 -13.50321 -13.40582 -13.32837 -13.29747 -13.13785 -13.09067 -12.69904 -12.52879 -12.48083 -12.16050 -12.01273 -11.79874 -11.78240 -11.61914 -11.53534 -11.26690 -11.05962 -10.84381 -10.70459 -10.56870 -9.75969 -9.53009 -8.86973 -7.82699 -5.17160 -0.20298 0.24144 1.45925 1.47737 1.53736 1.55875 1.90485 1.97775 2.50897 2.71266 3.17892 3.36095 3.41452 3.58054 3.80737 3.82780 3.88786 3.98501 4.00531 4.01461 4.10839 4.18004 4.20437 4.22783 4.36327 4.37787 4.46635 4.53177 4.64097 4.70422 4.76971 4.78346 4.80239 4.86475 4.89127 4.92302 5.02652 5.07534 5.10450 5.13962 5.19444 5.43310 5.46621 5.53226 5.53968 5.66563 5.76595 6.18112 6.21092 6.31247 6.74971 7.04908 7.09725 7.80154 8.49150 9.29304 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012593 B = 0.003016 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.984366 B = 9281.310920 C = 9452.550003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.064 3.936 3 O -0.321 6.321 4 C 0.339 3.661 5 N -0.557 5.557 6 C 0.156 3.844 7 C -0.198 4.198 8 C -0.007 4.007 9 C -0.225 4.225 10 C 0.570 3.430 11 O -0.572 6.572 12 N -0.603 5.603 13 C 0.121 3.879 14 C -0.123 4.123 15 C 0.160 3.840 16 H 0.033 0.967 17 C -0.110 4.110 18 H 0.052 0.948 19 C -0.121 4.121 20 C 0.183 3.817 21 N -0.617 5.617 22 C -0.229 4.229 23 H 0.088 0.912 24 C -0.071 4.071 25 N -0.955 5.955 26 Si 0.974 3.026 27 H -0.285 1.285 28 H -0.300 1.300 29 H -0.267 1.267 30 C 0.137 3.863 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.107 0.893 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.201 0.799 37 H 0.187 0.813 38 H 0.170 0.830 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.079 0.921 42 H 0.041 0.959 43 H 0.084 0.916 44 H 0.074 0.926 45 H 0.007 0.993 46 H 0.013 0.987 47 H 0.244 0.756 48 H 0.084 0.916 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.423 -15.114 -15.888 25.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.011 4.011 3 O -0.228 6.228 4 C 0.161 3.839 5 N -0.281 5.281 6 C -0.001 4.001 7 C -0.217 4.217 8 C -0.032 4.032 9 C -0.231 4.231 10 C 0.358 3.642 11 O -0.452 6.452 12 N -0.335 5.335 13 C -0.002 4.002 14 C -0.162 4.162 15 C 0.053 3.947 16 H 0.050 0.950 17 C -0.131 4.131 18 H 0.071 0.929 19 C -0.160 4.160 20 C 0.058 3.942 21 N -0.341 5.341 22 C -0.358 4.358 23 H 0.106 0.894 24 C -0.263 4.263 25 N -0.604 5.604 26 Si 0.803 3.197 27 H -0.212 1.212 28 H -0.226 1.226 29 H -0.192 1.192 30 C 0.016 3.984 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.126 0.874 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.218 0.782 37 H 0.204 0.796 38 H 0.187 0.813 39 H 0.117 0.883 40 H 0.112 0.888 41 H 0.098 0.902 42 H 0.060 0.940 43 H 0.102 0.898 44 H 0.092 0.908 45 H 0.025 0.975 46 H 0.032 0.968 47 H 0.054 0.946 48 H 0.102 0.898 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 11.283 -15.637 -16.094 25.117 hybrid contribution -0.305 0.797 1.467 1.698 sum 10.977 -14.840 -14.626 23.551 Atomic orbital electron populations 1.21845 0.91961 1.04263 1.02677 1.22811 0.95830 0.79788 1.02645 1.86317 1.17372 1.32451 1.86666 1.19917 0.84418 0.89209 0.90373 1.67494 1.08125 1.31714 1.20777 1.23419 0.88241 0.99800 0.88595 1.22382 1.03514 0.91492 1.04341 1.21970 0.89093 1.02299 0.89877 1.19896 0.95922 0.91181 1.16125 1.18273 0.82860 0.82163 0.80892 1.90742 1.35640 1.78452 1.40350 1.48553 1.41423 1.17963 1.25586 1.21897 0.90925 1.03219 0.84128 1.21813 1.00246 0.96782 0.97361 1.20886 0.93402 0.93682 0.86753 0.94958 1.22455 0.97512 0.97461 0.95657 0.92918 1.22591 1.00813 0.96525 0.96047 1.21308 0.90162 0.92732 0.90014 1.44538 1.34177 1.54293 1.01138 1.19413 1.10978 1.23464 0.81977 0.89428 1.25625 0.98468 1.00306 1.01902 1.70168 1.22834 1.36577 1.30838 0.85135 0.76522 0.78144 0.79914 1.21222 1.22645 1.19220 1.21752 0.94762 0.85629 0.96260 0.92739 0.92275 0.87420 0.91020 0.91277 0.78191 0.79570 0.81276 0.88287 0.88826 0.90250 0.94001 0.89773 0.90755 0.97469 0.96844 0.94647 0.89789 0.88323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 10.28 71.98 0.74 -2.20 16 2 C 0.06 1.46 6.03 71.98 0.43 1.89 16 3 O -0.32 -9.93 9.31 -83.75 -0.78 -10.70 16 4 C 0.34 9.31 7.49 85.13 0.64 9.95 16 5 N -0.56 -12.14 9.21 -308.00 -2.84 -14.98 16 6 C 0.16 2.04 11.17 84.71 0.95 2.99 16 7 C -0.20 -2.03 10.09 22.32 0.23 -1.81 16 8 C -0.01 -0.11 7.99 22.72 0.18 0.07 16 9 C -0.23 -5.74 4.52 -19.91 -0.09 -5.83 16 10 C 0.57 17.89 6.84 86.69 0.59 18.49 16 11 O -0.57 -22.40 16.13 -0.55 -0.01 -22.41 16 12 N -0.60 -17.12 3.01 -818.63 -2.47 -19.58 16 13 C 0.12 2.90 5.34 86.69 0.46 3.36 16 14 C -0.12 -4.06 5.45 30.43 0.17 -3.89 16 15 C 0.16 6.20 2.57 45.51 0.12 6.32 16 16 H 0.03 1.23 7.93 -2.39 -0.02 1.21 16 17 C -0.11 -3.97 2.84 -9.99 -0.03 -4.00 16 18 H 0.05 2.18 8.12 -2.38 -0.02 2.16 16 19 C -0.12 -4.50 6.53 31.63 0.21 -4.30 16 20 C 0.18 9.15 5.45 86.83 0.47 9.63 16 21 N -0.62 -31.22 3.35 -669.64 -2.24 -33.47 16 22 C -0.23 -12.58 9.86 84.03 0.83 -11.75 16 23 H 0.09 4.50 7.18 -2.91 -0.02 4.48 16 24 C -0.07 -4.02 5.49 84.86 0.47 -3.55 16 25 N -0.95 -58.16 10.44 21.65 0.23 -57.93 16 26 Si 0.97 45.72 29.55 68.60 2.03 47.75 16 27 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 28 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 29 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 30 C 0.14 4.05 6.05 85.66 0.52 4.57 16 31 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.07 1.49 8.10 -2.39 -0.02 1.47 16 35 H 0.07 1.48 8.10 -2.39 -0.02 1.46 16 36 H 0.20 0.98 8.06 -2.91 -0.02 0.95 16 37 H 0.19 0.37 8.06 -2.91 -0.02 0.34 16 38 H 0.17 1.80 7.77 -2.91 -0.02 1.77 16 39 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.09 1.99 5.52 -2.39 -0.01 1.97 16 41 H 0.08 2.57 7.59 -2.39 -0.02 2.55 16 42 H 0.04 1.58 8.11 -2.39 -0.02 1.56 16 43 H 0.08 2.72 8.11 -2.39 -0.02 2.70 16 44 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 45 H 0.01 0.39 7.77 -2.39 -0.02 0.37 16 46 H 0.01 0.76 7.21 -2.39 -0.02 0.74 16 47 H 0.24 14.57 8.31 -92.71 -0.77 13.80 16 48 H 0.08 2.64 7.01 -2.39 -0.02 2.63 16 49 H 0.10 2.44 8.08 -2.39 -0.02 2.42 16 Total: -1.00 -79.53 388.08 1.74 -77.79 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: 0.94 Total: 13.58 kcal Atomic # 6 Polarization: 13.07 SS G_CDS: 6.88 Total: 19.95 kcal Atomic # 7 Polarization: -118.64 SS G_CDS: -7.32 Total: -125.96 kcal Atomic # 8 Polarization: -32.33 SS G_CDS: -0.79 Total: -33.11 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -79.53 1.74 -77.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036883794.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.535 kcal (2) G-P(sol) polarization free energy of solvation -79.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds