Wall clock time and date at job start Wed Apr 1 2020 05:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42903 * 109.46928 * 2 1 4 4 C 1.35644 * 116.99874 * 180.02562 * 3 2 1 5 5 C 1.39347 * 120.54003 * 0.22128 * 4 3 2 6 6 C 1.38302 * 118.43546 * 180.29080 * 5 4 3 7 7 C 1.38762 * 119.44904 * 359.72571 * 6 5 4 8 8 N 1.31378 * 121.06704 * 0.03050 * 7 6 5 9 9 C 1.32857 * 121.69359 * 359.97371 * 8 7 6 10 10 C 1.47836 * 119.78505 * 180.02562 * 9 8 7 11 11 O 1.21551 * 120.00270 * 180.02562 * 10 9 8 12 12 N 1.34774 * 119.99624 * 359.97438 * 10 9 8 13 13 C 1.44221 * 115.76331 * 0.02562 * 12 10 9 14 14 C 1.51864 * 112.74934 * 186.17940 * 13 12 10 15 15 C 1.50987 * 111.88619 * 324.22132 * 14 13 12 16 16 H 1.09001 * 108.32310 * 180.27172 * 15 14 13 17 17 C 1.53982 * 111.97723 * 60.08109 * 15 14 13 18 18 H 1.08997 * 112.41699 * 75.67904 * 17 15 14 19 19 C 1.56267 * 99.75731 * 195.21952 * 17 15 14 20 20 C 1.54644 * 102.20602 * 38.87640 * 19 17 15 21 21 N 1.46661 * 113.21396 * 301.26188 * 15 14 13 22 22 C 1.36938 * 126.19820 * 330.13757 * 21 15 14 23 23 H 1.07999 * 119.99862 * 359.97438 * 22 21 15 24 24 C 1.38812 * 120.00039 * 179.97438 * 22 21 15 25 25 N 1.31625 * 119.99825 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99806 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46943 * 90.00204 * 26 24 22 28 28 H 1.48501 * 109.46785 * 209.99688 * 26 24 22 29 29 H 1.48496 * 109.47257 * 329.99893 * 26 24 22 30 30 C 1.43527 * 115.76417 * 179.97438 * 12 10 9 31 31 H 1.09004 * 109.47304 * 299.99788 * 1 2 3 32 32 H 1.08994 * 109.47089 * 59.99638 * 1 2 3 33 33 H 1.08997 * 109.47111 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.46642 * 240.00470 * 2 1 3 35 35 H 1.08994 * 109.47181 * 119.99814 * 2 1 3 36 36 H 1.07997 * 120.78084 * 0.02562 * 5 4 3 37 37 H 1.08005 * 120.27368 * 179.75579 * 6 5 4 38 38 H 1.07997 * 119.47166 * 179.97438 * 7 6 5 39 39 H 1.09003 * 108.82833 * 65.34332 * 13 12 10 40 40 H 1.08996 * 108.82722 * 307.02570 * 13 12 10 41 41 H 1.08993 * 109.00183 * 203.59622 * 14 13 12 42 42 H 1.09004 * 108.99178 * 84.83927 * 14 13 12 43 43 H 1.08998 * 110.85484 * 157.05426 * 19 17 15 44 44 H 1.08996 * 110.85860 * 280.69333 * 19 17 15 45 45 H 1.09000 * 109.96703 * 95.28438 * 20 19 17 46 46 H 1.08994 * 109.96820 * 216.51339 * 20 19 17 47 47 H 0.97000 * 119.99299 * 180.02562 * 25 24 22 48 48 H 1.09003 * 108.16500 * 58.87664 * 30 12 10 49 49 H 1.09000 * 108.16360 * 302.29047 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3511 1.5251 -0.0005 5 6 4.2103 0.4280 -0.0057 6 6 5.5738 0.6595 0.0001 7 6 6.0442 1.9649 0.0051 8 7 5.2154 2.9842 0.0049 9 6 3.8979 2.8126 -0.0005 10 6 3.0040 3.9900 -0.0010 11 8 1.7981 3.8376 -0.0055 12 7 3.5261 5.2325 0.0044 13 6 4.9664 5.3071 0.0100 14 6 5.4802 6.7276 0.1668 15 6 4.5995 7.7264 -0.5449 16 1 5.0220 8.7206 -0.3994 17 6 3.1577 7.7114 -0.0043 18 1 3.0708 8.2087 0.9617 19 6 2.4373 8.4931 -1.1497 20 6 3.1490 7.9531 -2.4120 21 7 4.4755 7.4664 -1.9829 22 6 5.4190 6.8789 -2.7828 23 1 6.3608 6.5594 -2.3617 24 6 5.1649 6.6940 -4.1349 25 7 4.0168 7.0829 -4.6480 26 14 6.4522 5.8932 -5.2262 27 1 6.2441 4.4229 -5.2401 28 1 6.3291 6.4236 -6.6078 29 1 7.8066 6.1965 -4.6983 30 6 2.5762 6.3084 0.0028 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 3.8207 -0.5792 -0.0098 37 1 6.2667 -0.1690 0.0003 38 1 7.1089 2.1460 0.0100 39 1 5.3435 4.8982 -0.9274 40 1 5.3468 4.7026 0.8334 41 1 6.4882 6.7877 -0.2435 42 1 5.5149 6.9773 1.2272 43 1 1.3738 8.2555 -1.1723 44 1 2.5940 9.5666 -1.0451 45 1 2.5732 7.1337 -2.8422 46 1 3.2643 8.7518 -3.1446 47 1 3.8392 6.9533 -5.5927 48 1 1.9460 6.2066 0.8863 49 1 1.9406 6.1992 -0.8759 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036915665.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:01 Heat of formation + Delta-G solvation = 26.852890 kcal Electronic energy + Delta-G solvation = -32398.414615 eV Core-core repulsion = 28328.043743 eV Total energy + Delta-G solvation = -4070.370873 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.05523 -39.72070 -38.31287 -37.79342 -34.87798 -32.96940 -32.23464 -32.14181 -31.66769 -30.07690 -29.22389 -27.63216 -25.43644 -24.66063 -24.27425 -22.94612 -22.60396 -22.09225 -20.23050 -19.88647 -18.33322 -17.76896 -17.27211 -16.69284 -16.37083 -16.13440 -15.79299 -15.37319 -15.15343 -14.70108 -14.46737 -14.27727 -13.86252 -13.65855 -13.55033 -13.33966 -13.02956 -12.77127 -12.73000 -12.58791 -12.36975 -12.20941 -11.95229 -11.52023 -11.35022 -11.24892 -11.11279 -11.04704 -10.82072 -10.65904 -10.58181 -10.11262 -9.93530 -9.87142 -9.66872 -9.64508 -9.56996 -9.47062 -8.87194 -8.51398 -8.46618 -7.72388 -6.72067 -5.61888 -2.93212 0.74697 1.21243 3.01090 3.11315 3.43889 3.48256 3.50589 3.54376 4.01023 4.36352 4.51299 4.56343 4.61976 4.74100 4.83738 4.95795 5.03930 5.09790 5.23848 5.31733 5.39406 5.42933 5.50718 5.65087 5.66240 5.69191 5.78626 5.85393 5.88666 5.91123 5.97452 6.12593 6.17542 6.22696 6.33419 6.42349 6.47047 6.56530 6.66887 6.76751 6.82545 6.94632 7.07978 7.20368 7.41851 7.65145 7.71065 7.79954 7.91177 7.99893 8.33809 8.75418 9.29810 9.92462 10.60705 11.50874 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010326 B = 0.004432 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2710.906196 B = 6316.694473 C = 7149.990612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.047 3.953 3 O -0.270 6.270 4 C 0.137 3.863 5 C -0.181 4.181 6 C -0.112 4.112 7 C 0.048 3.952 8 N -0.403 5.403 9 C 0.053 3.947 10 C 0.552 3.448 11 O -0.529 6.529 12 N -0.556 5.556 13 C 0.138 3.862 14 C -0.130 4.130 15 C 0.170 3.830 16 H 0.022 0.978 17 C -0.113 4.113 18 H 0.081 0.919 19 C -0.143 4.143 20 C 0.177 3.823 21 N -0.590 5.590 22 C -0.214 4.214 23 H 0.078 0.922 24 C -0.008 4.008 25 N -0.921 5.921 26 Si 0.904 3.096 27 H -0.292 1.292 28 H -0.292 1.292 29 H -0.281 1.281 30 C 0.145 3.855 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.142 0.858 37 H 0.139 0.861 38 H 0.164 0.836 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.052 0.948 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.046 0.954 46 H 0.041 0.959 47 H 0.250 0.750 48 H 0.048 0.952 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.335 -12.803 13.021 18.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 O -0.180 6.180 4 C 0.086 3.914 5 C -0.207 4.207 6 C -0.132 4.132 7 C -0.111 4.111 8 N -0.115 5.115 9 C -0.086 4.086 10 C 0.338 3.662 11 O -0.407 6.407 12 N -0.285 5.285 13 C 0.016 3.984 14 C -0.169 4.169 15 C 0.062 3.938 16 H 0.040 0.960 17 C -0.133 4.133 18 H 0.099 0.901 19 C -0.181 4.181 20 C 0.053 3.947 21 N -0.316 5.316 22 C -0.343 4.343 23 H 0.096 0.904 24 C -0.204 4.204 25 N -0.569 5.569 26 Si 0.735 3.265 27 H -0.219 1.219 28 H -0.219 1.219 29 H -0.207 1.207 30 C 0.022 3.978 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.159 0.841 37 H 0.156 0.844 38 H 0.181 0.819 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.071 0.929 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.064 0.936 46 H 0.059 0.941 47 H 0.060 0.940 48 H 0.067 0.933 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.811 -11.837 12.766 17.428 hybrid contribution 0.644 -1.621 -0.866 1.948 sum -0.167 -13.458 11.900 17.965 Atomic orbital electron populations 1.21728 0.92343 1.02408 1.04189 1.22907 0.96661 0.82343 1.00988 1.86444 1.16979 1.28224 1.86369 1.19976 0.84121 0.93724 0.93548 1.21680 0.94211 0.98476 1.06360 1.22151 0.95144 0.98882 0.97034 1.22888 1.00350 0.88063 0.99820 1.68630 1.01763 1.33339 1.07746 1.20810 0.90496 0.91313 1.05958 1.17737 0.86980 0.82762 0.78760 1.90774 1.13728 1.85601 1.50548 1.46261 1.07575 1.04995 1.69673 1.21249 0.78038 0.96031 1.03120 1.21380 1.00856 0.95522 0.99133 1.20239 0.91724 0.95595 0.86266 0.96030 1.22443 0.98311 0.94336 0.98193 0.90093 1.23328 0.98918 0.98721 0.97144 1.21294 0.85162 0.97476 0.90799 1.44357 1.15350 1.70457 1.01428 1.18923 0.94976 1.31223 0.89146 0.90439 1.24732 0.97164 1.01666 0.96858 1.69952 1.22510 1.52272 1.12143 0.86230 0.80865 0.79026 0.80367 1.21936 1.21856 1.20702 1.20291 0.90062 0.86043 1.01404 0.91301 0.91140 0.90596 0.92076 0.92178 0.84051 0.84352 0.81920 0.90000 0.90659 0.90809 0.92918 0.91989 0.92310 0.93594 0.94065 0.93975 0.93349 0.91483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 10.28 37.16 0.38 -1.02 16 2 C 0.05 0.49 5.48 37.16 0.20 0.69 16 3 O -0.27 -4.30 8.20 -40.58 -0.33 -4.63 16 4 C 0.14 2.14 6.71 -38.55 -0.26 1.88 16 5 C -0.18 -2.08 9.13 -39.15 -0.36 -2.44 16 6 C -0.11 -1.15 10.10 -39.36 -0.40 -1.55 16 7 C 0.05 0.59 11.17 -17.55 -0.20 0.40 16 8 N -0.40 -6.52 5.34 -9.71 -0.05 -6.57 16 9 C 0.05 0.96 6.61 -82.88 -0.55 0.41 16 10 C 0.55 11.51 7.50 -12.33 -0.09 11.42 16 11 O -0.53 -12.08 14.71 -16.63 -0.24 -12.32 16 12 N -0.56 -11.25 3.19 -180.29 -0.58 -11.83 16 13 C 0.14 2.61 4.15 -5.83 -0.02 2.58 16 14 C -0.13 -2.35 5.10 -28.32 -0.14 -2.50 16 15 C 0.17 3.47 2.93 -68.34 -0.20 3.27 16 16 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 17 C -0.11 -2.07 3.80 -88.93 -0.34 -2.41 16 18 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 19 C -0.14 -2.75 6.14 -24.11 -0.15 -2.89 16 20 C 0.18 4.39 4.82 -2.54 -0.01 4.37 16 21 N -0.59 -14.76 3.04 -164.17 -0.50 -15.26 16 22 C -0.21 -5.83 8.84 -15.06 -0.13 -5.97 16 23 H 0.08 2.03 6.89 -52.49 -0.36 1.67 16 24 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 25 N -0.92 -27.60 10.41 55.49 0.58 -27.02 16 26 Si 0.90 22.50 29.55 -169.99 -5.02 17.48 16 27 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 28 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 29 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 30 C 0.14 2.86 4.60 -6.19 -0.03 2.83 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.56 7.69 -51.93 -0.40 0.16 16 35 H 0.06 0.50 7.71 -51.93 -0.40 0.10 16 36 H 0.14 1.17 6.46 -52.49 -0.34 0.83 16 37 H 0.14 0.91 8.06 -52.48 -0.42 0.48 16 38 H 0.16 1.50 8.06 -52.49 -0.42 1.08 16 39 H 0.08 1.78 6.46 -51.93 -0.34 1.44 16 40 H 0.08 1.29 6.15 -51.93 -0.32 0.97 16 41 H 0.07 1.35 7.36 -51.93 -0.38 0.97 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.06 1.11 7.81 -51.93 -0.41 0.70 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.05 1.29 7.13 -51.93 -0.37 0.92 16 46 H 0.04 1.12 7.58 -51.93 -0.39 0.73 16 47 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 48 H 0.05 0.89 8.04 -51.93 -0.42 0.48 16 49 H 0.07 1.51 6.56 -51.93 -0.34 1.17 16 LS Contribution 375.88 15.07 5.66 5.66 Total: -1.00 -34.43 375.88 -10.28 -44.71 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -7.41 Total: 1.00 kcal Atomic # 6 Polarization: 11.16 SS G_CDS: -2.39 Total: 8.77 kcal Atomic # 7 Polarization: -60.12 SS G_CDS: -0.55 Total: -60.67 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: -0.58 Total: -16.95 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.43 -10.28 -44.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036915665.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.559 kcal (2) G-P(sol) polarization free energy of solvation -34.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds