Wall clock time and date at job start Wed Apr 1 2020 05:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42903 * 109.46928 * 2 1 4 4 C 1.35644 * 116.99874 * 180.02562 * 3 2 1 5 5 C 1.39347 * 120.54003 * 0.22128 * 4 3 2 6 6 C 1.38302 * 118.43546 * 180.29080 * 5 4 3 7 7 C 1.38762 * 119.44904 * 359.72571 * 6 5 4 8 8 N 1.31378 * 121.06704 * 0.03050 * 7 6 5 9 9 C 1.32857 * 121.69359 * 359.97371 * 8 7 6 10 10 C 1.47836 * 119.78505 * 180.02562 * 9 8 7 11 11 O 1.21551 * 120.00270 * 180.02562 * 10 9 8 12 12 N 1.34774 * 119.99624 * 359.97438 * 10 9 8 13 13 C 1.44221 * 115.76331 * 0.02562 * 12 10 9 14 14 C 1.51864 * 112.74934 * 186.17940 * 13 12 10 15 15 C 1.50987 * 111.88619 * 324.22132 * 14 13 12 16 16 H 1.09001 * 108.32310 * 180.27172 * 15 14 13 17 17 C 1.53982 * 111.97723 * 60.08109 * 15 14 13 18 18 H 1.08997 * 112.41699 * 75.67904 * 17 15 14 19 19 C 1.56267 * 99.75731 * 195.21952 * 17 15 14 20 20 C 1.54644 * 102.20602 * 38.87640 * 19 17 15 21 21 N 1.46661 * 113.21396 * 301.26188 * 15 14 13 22 22 C 1.36938 * 126.19820 * 330.13757 * 21 15 14 23 23 H 1.07999 * 119.99862 * 359.97438 * 22 21 15 24 24 C 1.38812 * 120.00039 * 179.97438 * 22 21 15 25 25 N 1.31625 * 119.99825 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99806 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46943 * 90.00204 * 26 24 22 28 28 H 1.48501 * 109.46785 * 209.99688 * 26 24 22 29 29 H 1.48496 * 109.47257 * 329.99893 * 26 24 22 30 30 C 1.43527 * 115.76417 * 179.97438 * 12 10 9 31 31 H 1.09004 * 109.47304 * 299.99788 * 1 2 3 32 32 H 1.08994 * 109.47089 * 59.99638 * 1 2 3 33 33 H 1.08997 * 109.47111 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.46642 * 240.00470 * 2 1 3 35 35 H 1.08994 * 109.47181 * 119.99814 * 2 1 3 36 36 H 1.07997 * 120.78084 * 0.02562 * 5 4 3 37 37 H 1.08005 * 120.27368 * 179.75579 * 6 5 4 38 38 H 1.07997 * 119.47166 * 179.97438 * 7 6 5 39 39 H 1.09003 * 108.82833 * 65.34332 * 13 12 10 40 40 H 1.08996 * 108.82722 * 307.02570 * 13 12 10 41 41 H 1.08993 * 109.00183 * 203.59622 * 14 13 12 42 42 H 1.09004 * 108.99178 * 84.83927 * 14 13 12 43 43 H 1.08998 * 110.85484 * 157.05426 * 19 17 15 44 44 H 1.08996 * 110.85860 * 280.69333 * 19 17 15 45 45 H 1.09000 * 109.96703 * 95.28438 * 20 19 17 46 46 H 1.08994 * 109.96820 * 216.51339 * 20 19 17 47 47 H 0.97000 * 119.99299 * 180.02562 * 25 24 22 48 48 H 1.09003 * 108.16500 * 58.87664 * 30 12 10 49 49 H 1.09000 * 108.16360 * 302.29047 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3511 1.5251 -0.0005 5 6 4.2103 0.4280 -0.0057 6 6 5.5738 0.6595 0.0001 7 6 6.0442 1.9649 0.0051 8 7 5.2154 2.9842 0.0049 9 6 3.8979 2.8126 -0.0005 10 6 3.0040 3.9900 -0.0010 11 8 1.7981 3.8376 -0.0055 12 7 3.5261 5.2325 0.0044 13 6 4.9664 5.3071 0.0100 14 6 5.4802 6.7276 0.1668 15 6 4.5995 7.7264 -0.5449 16 1 5.0220 8.7206 -0.3994 17 6 3.1577 7.7114 -0.0043 18 1 3.0708 8.2087 0.9617 19 6 2.4373 8.4931 -1.1497 20 6 3.1490 7.9531 -2.4120 21 7 4.4755 7.4664 -1.9829 22 6 5.4190 6.8789 -2.7828 23 1 6.3608 6.5594 -2.3617 24 6 5.1649 6.6940 -4.1349 25 7 4.0168 7.0829 -4.6480 26 14 6.4522 5.8932 -5.2262 27 1 6.2441 4.4229 -5.2401 28 1 6.3291 6.4236 -6.6078 29 1 7.8066 6.1965 -4.6983 30 6 2.5762 6.3084 0.0028 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 3.8207 -0.5792 -0.0098 37 1 6.2667 -0.1690 0.0003 38 1 7.1089 2.1460 0.0100 39 1 5.3435 4.8982 -0.9274 40 1 5.3468 4.7026 0.8334 41 1 6.4882 6.7877 -0.2435 42 1 5.5149 6.9773 1.2272 43 1 1.3738 8.2555 -1.1723 44 1 2.5940 9.5666 -1.0451 45 1 2.5732 7.1337 -2.8422 46 1 3.2643 8.7518 -3.1446 47 1 3.8392 6.9533 -5.5927 48 1 1.9460 6.2066 0.8863 49 1 1.9406 6.1992 -0.8759 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036915665.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:59 Heat of formation + Delta-G solvation = 5.375839 kcal Electronic energy + Delta-G solvation = -32399.345930 eV Core-core repulsion = 28328.043743 eV Total energy + Delta-G solvation = -4071.302188 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.27310 -41.10709 -39.51517 -39.23778 -36.51799 -34.76424 -33.41682 -33.29556 -33.02508 -31.36226 -30.83030 -29.32520 -26.98617 -26.21584 -25.47607 -24.27908 -24.09991 -23.08127 -21.88415 -21.46934 -19.64361 -19.10648 -18.62362 -18.27673 -17.63726 -17.49616 -17.11036 -16.83981 -16.57830 -16.35183 -15.91865 -15.53038 -15.30518 -15.10983 -14.85437 -14.57639 -14.41350 -14.24637 -13.93933 -13.84990 -13.57185 -13.49335 -13.25871 -13.15344 -12.99013 -12.87741 -12.75041 -12.43263 -12.25091 -12.17778 -12.01424 -11.84505 -11.54865 -11.50634 -11.39520 -11.23450 -11.09502 -10.76151 -10.65952 -10.09744 -9.62542 -9.21322 -8.79722 -7.78098 -5.09784 -0.31848 0.25518 1.41953 1.44047 1.52246 1.78466 2.06130 2.18938 2.52009 2.83529 3.20884 3.41424 3.57182 3.58196 3.71838 3.80983 3.87836 4.00214 4.01244 4.06571 4.12867 4.16383 4.27224 4.30691 4.35364 4.47086 4.55355 4.63070 4.65882 4.75389 4.80722 4.83907 4.88241 4.91396 5.01376 5.04083 5.11962 5.19437 5.19805 5.23120 5.40724 5.44990 5.52198 5.60637 5.67683 5.79325 5.92656 6.24719 6.25489 6.43649 6.81820 7.14936 7.24920 7.85712 8.53376 9.34301 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010326 B = 0.004432 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2710.906196 B = 6316.694473 C = 7149.990612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.036 3.964 3 O -0.308 6.308 4 C 0.124 3.876 5 C -0.173 4.173 6 C -0.087 4.087 7 C 0.042 3.958 8 N -0.427 5.427 9 C 0.002 3.998 10 C 0.539 3.461 11 O -0.567 6.567 12 N -0.564 5.564 13 C 0.149 3.851 14 C -0.127 4.127 15 C 0.159 3.841 16 H 0.034 0.966 17 C -0.097 4.097 18 H 0.128 0.872 19 C -0.129 4.129 20 C 0.187 3.813 21 N -0.607 5.607 22 C -0.205 4.205 23 H 0.088 0.912 24 C -0.076 4.076 25 N -0.958 5.958 26 Si 0.965 3.035 27 H -0.297 1.297 28 H -0.301 1.301 29 H -0.259 1.259 30 C 0.148 3.852 31 H 0.057 0.943 32 H 0.048 0.952 33 H 0.111 0.889 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.179 0.821 37 H 0.190 0.810 38 H 0.195 0.805 39 H 0.048 0.952 40 H 0.097 0.903 41 H 0.072 0.928 42 H 0.091 0.909 43 H 0.072 0.928 44 H 0.083 0.917 45 H -0.004 1.004 46 H 0.005 0.995 47 H 0.239 0.761 48 H 0.061 0.939 49 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.239 -14.980 15.648 21.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.038 4.038 3 O -0.220 6.220 4 C 0.073 3.927 5 C -0.200 4.200 6 C -0.106 4.106 7 C -0.120 4.120 8 N -0.140 5.140 9 C -0.134 4.134 10 C 0.327 3.673 11 O -0.447 6.447 12 N -0.293 5.293 13 C 0.027 3.973 14 C -0.165 4.165 15 C 0.052 3.948 16 H 0.051 0.949 17 C -0.117 4.117 18 H 0.146 0.854 19 C -0.168 4.168 20 C 0.062 3.938 21 N -0.332 5.332 22 C -0.334 4.334 23 H 0.106 0.894 24 C -0.267 4.267 25 N -0.609 5.609 26 Si 0.795 3.205 27 H -0.225 1.225 28 H -0.228 1.228 29 H -0.184 1.184 30 C 0.025 3.975 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.129 0.871 34 H 0.095 0.905 35 H 0.106 0.894 36 H 0.196 0.804 37 H 0.207 0.793 38 H 0.212 0.788 39 H 0.066 0.934 40 H 0.114 0.886 41 H 0.091 0.909 42 H 0.109 0.891 43 H 0.090 0.910 44 H 0.102 0.898 45 H 0.014 0.986 46 H 0.023 0.977 47 H 0.048 0.952 48 H 0.079 0.921 49 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 1.782 -13.996 15.443 20.917 hybrid contribution -0.118 -1.093 -1.646 1.979 sum 1.664 -15.088 13.797 20.513 Atomic orbital electron populations 1.21782 0.92108 1.04132 1.02543 1.23270 0.96981 0.80585 1.02971 1.86404 1.17642 1.31425 1.86485 1.20203 0.84669 0.94137 0.93726 1.22139 0.94311 0.98803 1.04709 1.22715 0.95330 0.99447 0.93109 1.23578 1.01306 0.88447 0.98630 1.68424 1.01277 1.35511 1.08738 1.20449 0.91147 0.91101 1.10659 1.18412 0.87249 0.83893 0.77725 1.90717 1.15387 1.86350 1.52263 1.46419 1.08124 1.05051 1.69727 1.21178 0.77185 0.96691 1.02213 1.21390 0.99904 0.94195 1.01049 1.20540 0.93689 0.96719 0.83833 0.94864 1.22505 0.96219 0.93279 0.99659 0.85443 1.23199 0.98983 0.99985 0.94585 1.20981 0.85497 0.94654 0.92718 1.44612 1.14846 1.69980 1.03739 1.19312 0.95489 1.29235 0.89354 0.89405 1.25536 0.99113 1.03486 0.98590 1.70204 1.24608 1.54561 1.11504 0.85248 0.79685 0.77434 0.78175 1.22517 1.22763 1.18366 1.20239 0.90156 0.87165 0.99975 0.92424 0.93314 0.87085 0.90498 0.89439 0.80371 0.79312 0.78806 0.93421 0.88579 0.90924 0.89097 0.90977 0.89832 0.98595 0.97670 0.95188 0.92115 0.95691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 10.28 71.98 0.74 -2.00 16 2 C 0.04 0.71 5.48 71.98 0.39 1.11 16 3 O -0.31 -10.02 8.20 -68.60 -0.56 -10.58 16 4 C 0.12 3.82 6.71 22.94 0.15 3.97 16 5 C -0.17 -3.41 9.13 22.55 0.21 -3.20 16 6 C -0.09 -1.37 10.10 22.41 0.23 -1.15 16 7 C 0.04 0.90 11.17 84.89 0.95 1.85 16 8 N -0.43 -13.50 5.34 -184.63 -0.99 -14.49 16 9 C 0.00 0.09 6.61 41.93 0.28 0.36 16 10 C 0.54 23.68 7.50 86.78 0.65 24.33 16 11 O -0.57 -27.75 14.71 17.11 0.25 -27.50 16 12 N -0.56 -23.46 3.19 -842.60 -2.69 -26.15 16 13 C 0.15 5.59 4.15 86.43 0.36 5.95 16 14 C -0.13 -4.33 5.10 29.56 0.15 -4.18 16 15 C 0.16 6.28 2.93 44.64 0.13 6.41 16 16 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 17 C -0.10 -3.42 3.80 -9.70 -0.04 -3.46 16 18 H 0.13 3.42 8.14 -2.39 -0.02 3.40 16 19 C -0.13 -4.97 6.14 32.29 0.20 -4.77 16 20 C 0.19 9.76 4.82 86.72 0.42 10.17 16 21 N -0.61 -31.05 3.04 -673.32 -2.05 -33.10 16 22 C -0.20 -11.38 8.84 84.03 0.74 -10.64 16 23 H 0.09 4.60 6.89 -2.91 -0.02 4.58 16 24 C -0.08 -4.45 5.49 84.86 0.47 -3.99 16 25 N -0.96 -61.00 10.41 21.65 0.23 -60.77 16 26 Si 0.96 47.60 29.55 68.60 2.03 49.63 16 27 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 28 H -0.30 -15.10 7.11 99.48 0.71 -14.40 16 29 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 30 C 0.15 5.98 4.60 86.56 0.40 6.38 16 31 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.08 1.24 7.69 -2.39 -0.02 1.22 16 35 H 0.09 1.21 7.71 -2.39 -0.02 1.19 16 36 H 0.18 2.07 6.46 -2.91 -0.02 2.05 16 37 H 0.19 1.13 8.06 -2.91 -0.02 1.11 16 38 H 0.20 2.78 8.06 -2.91 -0.02 2.75 16 39 H 0.05 2.11 6.46 -2.39 -0.02 2.09 16 40 H 0.10 3.19 6.15 -2.39 -0.01 3.17 16 41 H 0.07 2.50 7.36 -2.39 -0.02 2.48 16 42 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 43 H 0.07 2.62 7.81 -2.39 -0.02 2.61 16 44 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 45 H 0.00 -0.26 7.13 -2.39 -0.02 -0.28 16 46 H 0.01 0.30 7.58 -2.39 -0.02 0.28 16 47 H 0.24 15.02 8.31 -92.71 -0.77 14.25 16 48 H 0.06 2.27 8.04 -2.39 -0.02 2.25 16 49 H 0.02 1.20 6.56 -2.39 -0.02 1.19 16 Total: -1.00 -84.59 375.88 3.60 -80.99 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 0.96 Total: 14.83 kcal Atomic # 6 Polarization: 20.73 SS G_CDS: 6.42 Total: 27.15 kcal Atomic # 7 Polarization: -129.01 SS G_CDS: -5.50 Total: -134.51 kcal Atomic # 8 Polarization: -37.78 SS G_CDS: -0.31 Total: -38.09 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 2.03 Total: 49.63 kcal Total: -84.59 3.60 -80.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036915665.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.367 kcal (2) G-P(sol) polarization free energy of solvation -84.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds