Wall clock time and date at job start Wed Apr 1 2020 05:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42907 * 109.47118 * 2 1 4 4 C 1.35495 * 117.00593 * 180.02562 * 3 2 1 5 5 C 1.39163 * 119.53142 * 179.97438 * 4 3 2 6 6 C 1.37959 * 119.26724 * 179.97438 * 5 4 3 7 7 C 1.40283 * 118.35367 * 359.97438 * 6 5 4 8 8 C 1.47616 * 120.49549 * 180.02562 * 7 6 5 9 9 O 1.21578 * 120.00207 * 39.36733 * 8 7 6 10 10 N 1.34776 * 119.99663 * 219.37483 * 8 7 6 11 11 C 1.46947 * 120.44251 * 5.42733 * 10 8 7 12 12 C 1.54071 * 108.29619 * 125.72595 * 11 10 8 13 13 H 1.08999 * 110.52093 * 172.87477 * 12 11 10 14 14 C 1.53369 * 108.83790 * 294.51090 * 12 11 10 15 15 C 1.53009 * 109.25047 * 60.25431 * 14 12 11 16 16 C 1.53015 * 109.79640 * 60.57841 * 15 14 12 17 17 C 1.53366 * 109.27912 * 299.44035 * 16 15 14 18 18 H 1.09000 * 110.59560 * 178.09648 * 17 16 15 19 19 C 1.46950 * 120.44038 * 185.70920 * 10 8 7 20 20 N 1.47566 * 107.98293 * 56.33691 * 17 16 15 21 21 C 1.36938 * 121.61054 * 122.28362 * 20 17 16 22 22 H 1.08005 * 120.00041 * 152.23742 * 21 20 17 23 23 C 1.38808 * 120.00073 * 332.23126 * 21 20 17 24 24 N 1.31625 * 119.99898 * 340.54870 * 23 21 20 25 25 Si 1.86804 * 120.00234 * 160.54822 * 23 21 20 26 26 H 1.48497 * 109.46883 * 94.98584 * 25 23 21 27 27 H 1.48501 * 109.46821 * 214.98564 * 25 23 21 28 28 H 1.48496 * 109.46778 * 334.98467 * 25 23 21 29 29 C 1.39528 * 119.00438 * 359.97438 * 7 6 5 30 30 N 1.31661 * 120.63002 * 359.97438 * 29 7 6 31 31 H 1.09005 * 109.46658 * 60.00521 * 1 2 3 32 32 H 1.08995 * 109.46758 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47373 * 300.00157 * 1 2 3 34 34 H 1.09000 * 109.47870 * 239.99888 * 2 1 3 35 35 H 1.08999 * 109.47276 * 119.99180 * 2 1 3 36 36 H 1.07999 * 120.36573 * 0.24950 * 5 4 3 37 37 H 1.07991 * 120.82022 * 179.97438 * 6 5 4 38 38 H 1.08997 * 109.62922 * 245.49312 * 11 10 8 39 39 H 1.08996 * 109.62158 * 6.05780 * 11 10 8 40 40 H 1.09001 * 109.50464 * 300.32740 * 14 12 11 41 41 H 1.08995 * 109.54469 * 180.21681 * 14 12 11 42 42 H 1.08998 * 109.41665 * 300.48132 * 15 14 12 43 43 H 1.09001 * 109.36272 * 180.64127 * 15 14 12 44 44 H 1.08996 * 109.49837 * 179.49670 * 16 15 14 45 45 H 1.08995 * 109.53068 * 59.40225 * 16 15 14 46 46 H 1.08993 * 109.62805 * 353.95708 * 19 10 8 47 47 H 1.08998 * 109.62519 * 114.53731 * 19 10 8 48 48 H 0.96995 * 119.99989 * 179.97438 * 24 23 21 49 49 H 1.08001 * 119.68714 * 179.97438 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3496 1.5250 -0.0005 5 6 3.8709 2.8153 -0.0011 6 6 5.2394 2.9899 -0.0011 7 6 6.0565 1.8496 0.0000 8 6 7.5267 1.9816 0.0006 9 8 8.0591 2.8471 0.6681 10 7 8.2788 1.1427 -0.7390 11 6 7.6434 0.1715 -1.6403 12 6 8.2306 0.3653 -3.0515 13 1 7.8783 -0.4178 -3.7228 14 6 7.8201 1.7479 -3.5732 15 6 8.3686 2.8245 -2.6344 16 6 9.8959 2.7438 -2.5895 17 6 10.3149 1.3650 -2.0647 18 1 11.4009 1.2720 -2.0556 19 6 9.7451 1.1828 -0.6501 20 7 9.7013 0.3414 -2.9327 21 6 10.4600 -0.5859 -3.5958 22 1 10.0409 -1.5505 -3.8416 23 6 11.7677 -0.2861 -3.9522 24 7 12.1626 0.9681 -4.0115 25 14 12.9670 -1.6626 -4.3475 26 1 12.9937 -1.8896 -5.8148 27 1 14.3251 -1.2852 -3.8801 28 1 12.5356 -2.9071 -3.6619 29 6 5.4586 0.5889 0.0016 30 7 4.1475 0.4683 0.0026 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8935 -0.5138 -0.8899 35 1 1.8934 -0.5137 0.8900 36 1 3.2114 3.6706 0.0029 37 1 5.6708 3.9799 -0.0020 38 1 7.8482 -0.8405 -1.2912 39 1 6.5673 0.3430 -1.6632 40 1 6.7328 1.8154 -3.6085 41 1 8.2267 1.8957 -4.5736 42 1 7.9680 2.6700 -1.6325 43 1 8.0682 3.8075 -2.9972 44 1 10.2819 3.5182 -1.9267 45 1 10.2981 2.8893 -3.5920 46 1 10.0510 2.0191 -0.0216 47 1 10.1118 0.2484 -0.2252 48 1 13.0764 1.1776 -4.2602 49 1 6.0772 -0.2964 0.0021 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039617449.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:54 Heat of formation + Delta-G solvation = 23.569656 kcal Electronic energy + Delta-G solvation = -32045.957015 eV Core-core repulsion = 27975.443771 eV Total energy + Delta-G solvation = -4070.513245 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.29128 -40.23837 -38.30818 -37.44250 -34.15745 -32.82948 -32.66372 -32.44684 -31.84327 -30.65028 -29.93362 -26.94704 -25.72169 -24.50041 -24.44739 -23.29367 -22.53693 -21.51662 -21.22085 -19.90672 -18.78079 -18.37169 -17.59730 -17.04285 -16.54574 -16.36225 -15.43179 -15.11260 -14.80013 -14.65342 -14.25323 -14.10386 -14.05209 -13.90649 -13.57985 -13.40465 -13.15586 -12.91417 -12.87281 -12.63986 -12.53090 -12.40261 -12.11643 -11.85380 -11.77550 -11.42756 -11.21914 -11.03613 -10.88590 -10.71393 -10.36791 -10.21389 -10.13645 -10.07935 -10.03995 -9.97817 -9.57723 -9.46244 -9.29454 -8.63949 -8.53647 -7.92409 -6.65639 -5.86327 -3.28915 0.71948 1.03671 2.74213 2.89738 3.30174 3.32957 3.41631 3.43160 3.67698 4.03187 4.41387 4.59720 4.69146 4.71527 4.72736 4.88848 4.92490 5.10142 5.11139 5.28328 5.36954 5.44911 5.52148 5.58459 5.62205 5.66030 5.68841 5.73822 5.84791 5.89504 5.91624 6.01215 6.14084 6.15383 6.25715 6.42346 6.45049 6.48229 6.60190 6.71000 6.85722 6.92524 6.98497 7.06191 7.12180 7.47290 7.56413 7.57935 7.71808 7.81080 8.32612 8.42146 9.09321 9.71896 10.33692 11.20514 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018431 B = 0.003059 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.773888 B = 9149.957186 C = 9869.633898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.064 3.936 3 O -0.305 6.305 4 C 0.336 3.664 5 C -0.196 4.196 6 C 0.010 3.990 7 C -0.213 4.213 8 C 0.565 3.435 9 O -0.546 6.546 10 N -0.582 5.582 11 C 0.084 3.916 12 C 0.153 3.847 13 H 0.078 0.922 14 C -0.122 4.122 15 C -0.138 4.138 16 C -0.112 4.112 17 C 0.179 3.821 18 H 0.114 0.886 19 C 0.092 3.908 20 N -0.577 5.577 21 C -0.253 4.253 22 H 0.067 0.933 23 C 0.006 3.994 24 N -0.893 5.893 25 Si 0.900 3.100 26 H -0.289 1.289 27 H -0.290 1.290 28 H -0.279 1.279 29 C 0.175 3.825 30 N -0.543 5.543 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.146 0.854 37 H 0.149 0.851 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.037 0.963 41 H 0.059 0.941 42 H 0.078 0.922 43 H 0.030 0.970 44 H 0.037 0.963 45 H 0.072 0.928 46 H 0.082 0.918 47 H 0.063 0.937 48 H 0.254 0.746 49 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.116 0.149 7.381 19.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.011 4.011 3 O -0.212 6.212 4 C 0.157 3.843 5 C -0.217 4.217 6 C -0.016 4.016 7 C -0.219 4.219 8 C 0.353 3.647 9 O -0.425 6.425 10 N -0.314 5.314 11 C -0.041 4.041 12 C 0.045 3.955 13 H 0.096 0.904 14 C -0.162 4.162 15 C -0.176 4.176 16 C -0.151 4.151 17 C 0.072 3.928 18 H 0.132 0.868 19 C -0.031 4.031 20 N -0.298 5.298 21 C -0.382 4.382 22 H 0.085 0.915 23 C -0.193 4.193 24 N -0.537 5.537 25 Si 0.730 3.270 26 H -0.216 1.216 27 H -0.216 1.216 28 H -0.204 1.204 29 C 0.018 3.982 30 N -0.266 5.266 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.164 0.836 37 H 0.167 0.833 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.056 0.944 41 H 0.078 0.922 42 H 0.095 0.905 43 H 0.048 0.952 44 H 0.056 0.944 45 H 0.091 0.909 46 H 0.100 0.900 47 H 0.081 0.919 48 H 0.064 0.936 49 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -18.245 -0.024 7.663 19.789 hybrid contribution 1.065 -0.053 -0.474 1.167 sum -17.180 -0.077 7.189 18.623 Atomic orbital electron populations 1.21826 0.93005 1.02951 1.03283 1.22652 0.94722 0.80874 1.02828 1.86195 1.16870 1.30974 1.87200 1.19995 0.83992 0.90032 0.90260 1.20982 0.95475 0.95802 1.09431 1.21443 0.91588 0.99108 0.89414 1.20874 0.95259 0.95206 1.10530 1.17679 0.85739 0.81737 0.79505 1.90775 1.73534 1.34391 1.43836 1.48090 1.07777 1.35234 1.40253 1.22856 0.96568 0.91843 0.92794 1.21263 0.86792 0.95469 0.91978 0.90377 1.21948 0.97465 0.96977 0.99786 1.22091 0.97995 0.96501 1.00969 1.21781 0.93859 0.97538 1.01968 1.21102 0.99351 0.87407 0.84912 0.86821 1.22576 0.77441 1.01590 1.01460 1.44408 0.99024 1.35022 1.51345 1.19112 0.94363 0.92924 1.31842 0.91506 1.25012 0.99327 0.95775 0.99221 1.70010 1.17355 1.15923 1.50401 0.86326 0.80846 0.81867 0.77972 1.21574 1.21580 1.20444 1.22813 0.89058 0.96589 0.89702 1.67369 1.06180 1.32740 1.20346 0.91619 0.90240 0.91697 0.91304 0.91451 0.83576 0.83294 0.91183 0.90568 0.94414 0.92176 0.90450 0.95155 0.94412 0.90902 0.89954 0.91868 0.93559 0.81406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.28 37.16 0.38 -0.57 16 2 C 0.06 0.56 6.02 37.16 0.22 0.79 16 3 O -0.31 -3.38 10.10 -18.18 -0.18 -3.57 16 4 C 0.34 4.08 7.49 -16.96 -0.13 3.96 16 5 C -0.20 -2.19 10.02 -39.34 -0.39 -2.59 16 6 C 0.01 0.13 9.78 -38.92 -0.38 -0.25 16 7 C -0.21 -3.01 5.17 -104.82 -0.54 -3.55 16 8 C 0.56 9.57 4.69 -12.43 -0.06 9.52 16 9 O -0.55 -10.81 16.28 5.30 0.09 -10.73 16 10 N -0.58 -9.98 1.64 -173.15 -0.28 -10.26 16 11 C 0.08 1.33 4.38 -3.24 -0.01 1.31 16 12 C 0.15 2.90 3.61 -66.59 -0.24 2.66 16 13 H 0.08 1.45 8.03 -51.93 -0.42 1.03 16 14 C -0.12 -2.28 5.59 -26.54 -0.15 -2.43 16 15 C -0.14 -2.64 5.55 -26.72 -0.15 -2.79 16 16 C -0.11 -2.42 5.56 -26.53 -0.15 -2.57 16 17 C 0.18 3.95 2.65 -66.85 -0.18 3.77 16 18 H 0.11 2.85 5.95 -51.93 -0.31 2.54 16 19 C 0.09 1.77 5.89 -3.49 -0.02 1.75 16 20 N -0.58 -13.07 2.53 -155.15 -0.39 -13.47 16 21 C -0.25 -6.40 9.71 -15.06 -0.15 -6.54 16 22 H 0.07 1.66 7.90 -52.48 -0.41 1.25 16 23 C 0.01 0.15 4.96 -17.43 -0.09 0.07 16 24 N -0.89 -24.19 11.06 55.49 0.61 -23.58 16 25 Si 0.90 20.64 29.60 -169.99 -5.03 15.61 16 26 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 27 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 28 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 29 C 0.18 2.24 8.53 -17.14 -0.15 2.10 16 30 N -0.54 -6.87 9.18 -12.96 -0.12 -6.99 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 35 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 36 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 37 H 0.15 1.73 8.06 -52.49 -0.42 1.31 16 38 H 0.07 1.06 8.12 -51.93 -0.42 0.63 16 39 H 0.08 1.06 4.61 -51.93 -0.24 0.82 16 40 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 42 H 0.08 1.44 2.49 -52.43 -0.13 1.31 16 43 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.07 1.78 7.97 -51.93 -0.41 1.37 16 46 H 0.08 1.60 6.98 -51.93 -0.36 1.24 16 47 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 48 H 0.25 6.75 8.31 -40.82 -0.34 6.42 16 49 H 0.17 1.94 6.47 -52.49 -0.34 1.60 16 LS Contribution 375.88 15.07 5.66 5.66 Total: -1.00 -29.29 375.88 -9.07 -38.36 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -7.25 Total: 4.33 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: -2.17 Total: 4.63 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: -0.18 Total: -54.30 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -0.10 Total: -14.29 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.03 Total: 15.61 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.29 -9.07 -38.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039617449.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.926 kcal (2) G-P(sol) polarization free energy of solvation -29.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds