Wall clock time and date at job start Wed Apr 1 2020 05:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42907 * 109.47118 * 2 1 4 4 C 1.35495 * 117.00593 * 180.02562 * 3 2 1 5 5 C 1.39163 * 119.53142 * 179.97438 * 4 3 2 6 6 C 1.37959 * 119.26724 * 179.97438 * 5 4 3 7 7 C 1.40283 * 118.35367 * 359.97438 * 6 5 4 8 8 C 1.47616 * 120.49549 * 180.02562 * 7 6 5 9 9 O 1.21578 * 120.00207 * 39.36733 * 8 7 6 10 10 N 1.34776 * 119.99663 * 219.37483 * 8 7 6 11 11 C 1.46947 * 120.44251 * 5.42733 * 10 8 7 12 12 C 1.54071 * 108.29619 * 125.72595 * 11 10 8 13 13 H 1.08999 * 110.52093 * 172.87477 * 12 11 10 14 14 C 1.53369 * 108.83790 * 294.51090 * 12 11 10 15 15 C 1.53009 * 109.25047 * 60.25431 * 14 12 11 16 16 C 1.53015 * 109.79640 * 60.57841 * 15 14 12 17 17 C 1.53366 * 109.27912 * 299.44035 * 16 15 14 18 18 H 1.09000 * 110.59560 * 178.09648 * 17 16 15 19 19 C 1.46950 * 120.44038 * 185.70920 * 10 8 7 20 20 N 1.47566 * 107.98293 * 56.33691 * 17 16 15 21 21 C 1.36938 * 121.61054 * 122.28362 * 20 17 16 22 22 H 1.08005 * 120.00041 * 152.23742 * 21 20 17 23 23 C 1.38808 * 120.00073 * 332.23126 * 21 20 17 24 24 N 1.31625 * 119.99898 * 340.54870 * 23 21 20 25 25 Si 1.86804 * 120.00234 * 160.54822 * 23 21 20 26 26 H 1.48497 * 109.46883 * 94.98584 * 25 23 21 27 27 H 1.48501 * 109.46821 * 214.98564 * 25 23 21 28 28 H 1.48496 * 109.46778 * 334.98467 * 25 23 21 29 29 C 1.39528 * 119.00438 * 359.97438 * 7 6 5 30 30 N 1.31661 * 120.63002 * 359.97438 * 29 7 6 31 31 H 1.09005 * 109.46658 * 60.00521 * 1 2 3 32 32 H 1.08995 * 109.46758 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47373 * 300.00157 * 1 2 3 34 34 H 1.09000 * 109.47870 * 239.99888 * 2 1 3 35 35 H 1.08999 * 109.47276 * 119.99180 * 2 1 3 36 36 H 1.07999 * 120.36573 * 0.24950 * 5 4 3 37 37 H 1.07991 * 120.82022 * 179.97438 * 6 5 4 38 38 H 1.08997 * 109.62922 * 245.49312 * 11 10 8 39 39 H 1.08996 * 109.62158 * 6.05780 * 11 10 8 40 40 H 1.09001 * 109.50464 * 300.32740 * 14 12 11 41 41 H 1.08995 * 109.54469 * 180.21681 * 14 12 11 42 42 H 1.08998 * 109.41665 * 300.48132 * 15 14 12 43 43 H 1.09001 * 109.36272 * 180.64127 * 15 14 12 44 44 H 1.08996 * 109.49837 * 179.49670 * 16 15 14 45 45 H 1.08995 * 109.53068 * 59.40225 * 16 15 14 46 46 H 1.08993 * 109.62805 * 353.95708 * 19 10 8 47 47 H 1.08998 * 109.62519 * 114.53731 * 19 10 8 48 48 H 0.96995 * 119.99989 * 179.97438 * 24 23 21 49 49 H 1.08001 * 119.68714 * 179.97438 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3496 1.5250 -0.0005 5 6 3.8709 2.8153 -0.0011 6 6 5.2394 2.9899 -0.0011 7 6 6.0565 1.8496 0.0000 8 6 7.5267 1.9816 0.0006 9 8 8.0591 2.8471 0.6681 10 7 8.2788 1.1427 -0.7390 11 6 7.6434 0.1715 -1.6403 12 6 8.2306 0.3653 -3.0515 13 1 7.8783 -0.4178 -3.7228 14 6 7.8201 1.7479 -3.5732 15 6 8.3686 2.8245 -2.6344 16 6 9.8959 2.7438 -2.5895 17 6 10.3149 1.3650 -2.0647 18 1 11.4009 1.2720 -2.0556 19 6 9.7451 1.1828 -0.6501 20 7 9.7013 0.3414 -2.9327 21 6 10.4600 -0.5859 -3.5958 22 1 10.0409 -1.5505 -3.8416 23 6 11.7677 -0.2861 -3.9522 24 7 12.1626 0.9681 -4.0115 25 14 12.9670 -1.6626 -4.3475 26 1 12.9937 -1.8896 -5.8148 27 1 14.3251 -1.2852 -3.8801 28 1 12.5356 -2.9071 -3.6619 29 6 5.4586 0.5889 0.0016 30 7 4.1475 0.4683 0.0026 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8935 -0.5138 -0.8899 35 1 1.8934 -0.5137 0.8900 36 1 3.2114 3.6706 0.0029 37 1 5.6708 3.9799 -0.0020 38 1 7.8482 -0.8405 -1.2912 39 1 6.5673 0.3430 -1.6632 40 1 6.7328 1.8154 -3.6085 41 1 8.2267 1.8957 -4.5736 42 1 7.9680 2.6700 -1.6325 43 1 8.0682 3.8075 -2.9972 44 1 10.2819 3.5182 -1.9267 45 1 10.2981 2.8893 -3.5920 46 1 10.0510 2.0191 -0.0216 47 1 10.1118 0.2484 -0.2252 48 1 13.0764 1.1776 -4.2602 49 1 6.0772 -0.2964 0.0021 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039617449.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:52 Heat of formation + Delta-G solvation = 6.694075 kcal Electronic energy + Delta-G solvation = -32046.688795 eV Core-core repulsion = 27975.443771 eV Total energy + Delta-G solvation = -4071.245025 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.51339 -41.36629 -39.47413 -38.67816 -35.73358 -34.48918 -33.72929 -33.60931 -32.94033 -32.25235 -31.06707 -28.53673 -27.19106 -25.89565 -25.35903 -24.69448 -23.39541 -23.05334 -22.75351 -21.25005 -20.06989 -19.57768 -18.95421 -18.26313 -17.73408 -17.33452 -16.86821 -16.56091 -16.47428 -15.72395 -15.70404 -15.31873 -15.14247 -15.06940 -14.94990 -14.66048 -14.50202 -14.41338 -14.03968 -13.77800 -13.63501 -13.44948 -13.34172 -13.27119 -13.09979 -12.99390 -12.55963 -12.47188 -12.43470 -12.15932 -11.87102 -11.75655 -11.68610 -11.64381 -11.40984 -11.11743 -11.05752 -10.97785 -10.63656 -10.44073 -9.61089 -9.46336 -8.46237 -7.80667 -5.25122 -0.28149 0.11378 1.48592 1.52750 1.60399 1.63930 1.91493 2.01464 2.54049 2.66007 3.12838 3.32325 3.42335 3.51035 3.74661 3.96638 3.99088 4.10343 4.13093 4.15585 4.21360 4.23691 4.28074 4.35611 4.44107 4.50259 4.57024 4.60565 4.70298 4.73483 4.83622 4.85892 4.88046 4.89247 4.99301 5.02482 5.03759 5.13339 5.22537 5.26090 5.30514 5.32081 5.40453 5.53538 5.67527 5.73532 5.85355 6.14181 6.41677 6.43233 6.63120 7.07027 7.17030 7.85624 8.44693 9.22982 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018431 B = 0.003059 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.773888 B = 9149.957186 C = 9869.633898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.058 3.942 3 O -0.309 6.309 4 C 0.332 3.668 5 C -0.188 4.188 6 C 0.009 3.991 7 C -0.230 4.230 8 C 0.569 3.431 9 O -0.578 6.578 10 N -0.583 5.583 11 C 0.095 3.905 12 C 0.145 3.855 13 H 0.085 0.915 14 C -0.116 4.116 15 C -0.133 4.133 16 C -0.106 4.106 17 C 0.180 3.820 18 H 0.078 0.922 19 C 0.105 3.895 20 N -0.591 5.591 21 C -0.254 4.254 22 H 0.071 0.929 23 C -0.045 4.045 24 N -0.922 5.922 25 Si 0.959 3.041 26 H -0.292 1.292 27 H -0.299 1.299 28 H -0.269 1.269 29 C 0.180 3.820 30 N -0.548 5.548 31 H 0.066 0.934 32 H 0.098 0.902 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.172 0.828 37 H 0.155 0.845 38 H 0.084 0.916 39 H 0.104 0.896 40 H 0.069 0.931 41 H 0.032 0.968 42 H 0.090 0.910 43 H 0.035 0.965 44 H 0.035 0.965 45 H 0.035 0.965 46 H 0.077 0.923 47 H 0.067 0.933 48 H 0.247 0.753 49 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.302 -0.847 8.185 22.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.016 4.016 3 O -0.216 6.216 4 C 0.153 3.847 5 C -0.208 4.208 6 C -0.016 4.016 7 C -0.235 4.235 8 C 0.360 3.640 9 O -0.459 6.459 10 N -0.314 5.314 11 C -0.029 4.029 12 C 0.038 3.962 13 H 0.103 0.897 14 C -0.155 4.155 15 C -0.171 4.171 16 C -0.145 4.145 17 C 0.073 3.927 18 H 0.096 0.904 19 C -0.019 4.019 20 N -0.312 5.312 21 C -0.384 4.384 22 H 0.089 0.911 23 C -0.241 4.241 24 N -0.568 5.568 25 Si 0.788 3.212 26 H -0.220 1.220 27 H -0.225 1.225 28 H -0.194 1.194 29 C 0.022 3.978 30 N -0.272 5.272 31 H 0.085 0.915 32 H 0.116 0.884 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.189 0.811 37 H 0.173 0.827 38 H 0.102 0.898 39 H 0.122 0.878 40 H 0.088 0.912 41 H 0.050 0.950 42 H 0.108 0.892 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.053 0.947 46 H 0.095 0.905 47 H 0.085 0.915 48 H 0.056 0.944 49 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -21.488 -1.041 8.469 23.121 hybrid contribution 1.922 0.273 -0.711 2.067 sum -19.566 -0.768 7.758 21.062 Atomic orbital electron populations 1.21838 0.91051 1.04241 1.03403 1.22872 0.96270 0.79815 1.02672 1.86213 1.16218 1.32379 1.86771 1.20279 0.84476 0.90350 0.89569 1.21206 0.95163 0.96396 1.08066 1.21575 0.92057 0.98977 0.89031 1.20663 0.93239 0.96516 1.13126 1.18058 0.86872 0.80622 0.78485 1.90763 1.74459 1.35666 1.45025 1.48067 1.06823 1.35758 1.40777 1.22829 0.97626 0.92220 0.90189 1.21514 0.84600 0.95815 0.94318 0.89685 1.21867 0.99160 0.96532 0.97919 1.22074 0.95907 0.97205 1.01917 1.21651 0.95774 0.97476 0.99571 1.20895 0.97635 0.87504 0.86689 0.90437 1.22210 0.79022 1.01554 0.99088 1.44562 1.00639 1.34671 1.51360 1.19420 0.94748 0.93577 1.30639 0.91089 1.25652 1.00898 0.97318 1.00220 1.70169 1.16961 1.17491 1.52176 0.85404 0.78573 0.79955 0.77283 1.21978 1.22538 1.19406 1.22929 0.89245 0.96415 0.89164 1.67419 1.05999 1.33077 1.20661 0.91538 0.88386 0.91508 0.91480 0.91565 0.81058 0.82700 0.89762 0.87807 0.91224 0.94956 0.89240 0.94580 0.94621 0.94650 0.90476 0.91487 0.94422 0.80211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 10.28 71.98 0.74 -0.68 16 2 C 0.06 0.87 6.02 71.98 0.43 1.30 16 3 O -0.31 -5.94 10.10 -87.96 -0.89 -6.83 16 4 C 0.33 7.03 7.49 84.83 0.64 7.66 16 5 C -0.19 -3.57 10.02 22.43 0.22 -3.35 16 6 C 0.01 0.20 9.78 22.70 0.22 0.42 16 7 C -0.23 -5.88 5.17 -19.99 -0.10 -5.98 16 8 C 0.57 18.29 4.69 86.72 0.41 18.70 16 9 O -0.58 -22.34 16.28 -3.96 -0.06 -22.40 16 10 N -0.58 -19.08 1.64 -819.98 -1.34 -20.42 16 11 C 0.09 2.75 4.38 86.66 0.38 3.13 16 12 C 0.14 5.26 3.61 45.27 0.16 5.42 16 13 H 0.09 2.98 8.03 -2.39 -0.02 2.96 16 14 C -0.12 -4.16 5.59 30.72 0.17 -3.99 16 15 C -0.13 -5.03 5.55 30.60 0.17 -4.86 16 16 C -0.11 -4.69 5.56 30.72 0.17 -4.52 16 17 C 0.18 8.14 2.65 45.11 0.12 8.26 16 18 H 0.08 4.09 5.95 -2.39 -0.01 4.08 16 19 C 0.11 4.02 5.89 86.49 0.51 4.53 16 20 N -0.59 -26.85 2.53 -644.79 -1.63 -28.48 16 21 C -0.25 -12.88 9.71 84.03 0.82 -12.07 16 22 H 0.07 3.49 7.90 -2.91 -0.02 3.46 16 23 C -0.04 -2.37 4.96 84.86 0.42 -1.95 16 24 N -0.92 -52.06 11.06 21.65 0.24 -51.82 16 25 Si 0.96 43.27 29.60 68.60 2.03 45.30 16 26 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 27 H -0.30 -13.78 7.11 99.48 0.71 -13.08 16 28 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 29 C 0.18 4.03 8.53 85.03 0.73 4.76 16 30 N -0.55 -12.17 9.18 -307.81 -2.82 -15.00 16 31 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.07 1.02 8.10 -2.39 -0.02 1.00 16 35 H 0.07 1.00 8.10 -2.39 -0.02 0.98 16 36 H 0.17 2.34 8.06 -2.91 -0.02 2.31 16 37 H 0.16 3.22 8.06 -2.92 -0.02 3.20 16 38 H 0.08 2.26 8.12 -2.39 -0.02 2.24 16 39 H 0.10 2.49 4.61 -2.39 -0.01 2.48 16 40 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.09 3.21 2.49 -3.37 -0.01 3.20 16 43 H 0.04 1.30 8.14 -2.39 -0.02 1.29 16 44 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.03 1.81 7.97 -2.39 -0.02 1.79 16 46 H 0.08 3.03 6.98 -2.39 -0.02 3.01 16 47 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 48 H 0.25 13.73 8.31 -92.71 -0.77 12.96 16 49 H 0.18 3.52 6.47 -2.91 -0.02 3.50 16 Total: -1.00 -64.43 375.88 2.69 -61.75 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: 0.96 Total: 21.11 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: 6.21 Total: 16.78 kcal Atomic # 7 Polarization: -110.16 SS G_CDS: -5.56 Total: -115.72 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -0.95 Total: -29.23 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -64.43 2.69 -61.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039617449.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.443 kcal (2) G-P(sol) polarization free energy of solvation -64.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds