Wall clock time and date at job start Wed Apr 1 2020 05:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42898 * 109.46604 * 2 1 4 4 C 1.35649 * 116.99679 * 180.02562 * 3 2 1 5 5 C 1.39345 * 120.54233 * 0.26346 * 4 3 2 6 6 C 1.38305 * 118.43944 * 180.28927 * 5 4 3 7 7 C 1.38754 * 119.44614 * 359.73168 * 6 5 4 8 8 N 1.31373 * 121.06783 * 359.97438 * 7 6 5 9 9 C 1.32862 * 121.69720 * 0.02562 * 8 7 6 10 10 C 1.47827 * 119.78477 * 180.02562 * 9 8 7 11 11 O 1.21551 * 120.00229 * 222.46199 * 10 9 8 12 12 N 1.34780 * 120.00168 * 42.45746 * 10 9 8 13 13 C 1.46943 * 120.44085 * 356.54862 * 12 10 9 14 14 C 1.54065 * 108.50343 * 125.62684 * 13 12 10 15 15 H 1.09000 * 110.71456 * 172.22094 * 14 13 12 16 16 C 1.53368 * 108.80413 * 294.57359 * 14 13 12 17 17 C 1.53010 * 109.24575 * 60.02373 * 16 14 13 18 18 C 1.52557 * 109.67031 * 60.81390 * 17 16 14 19 19 C 1.53367 * 109.33240 * 299.17330 * 18 17 16 20 20 H 1.09008 * 111.08110 * 177.90003 * 19 18 17 21 21 C 1.46945 * 120.44458 * 176.52125 * 12 10 9 22 22 N 1.47558 * 107.98867 * 56.44426 * 19 18 17 23 23 C 1.36945 * 121.61437 * 122.26070 * 22 19 18 24 24 H 1.07992 * 120.00251 * 153.89832 * 23 22 19 25 25 C 1.38818 * 119.99648 * 333.90429 * 23 22 19 26 26 N 1.31618 * 119.99811 * 338.86876 * 25 23 22 27 27 Si 1.86797 * 119.99986 * 158.86647 * 25 23 22 28 28 H 1.48495 * 109.46792 * 84.99375 * 27 25 23 29 29 H 1.48500 * 109.47254 * 204.99595 * 27 25 23 30 30 H 1.48504 * 109.47127 * 324.99562 * 27 25 23 31 31 H 1.09002 * 109.46635 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46478 * 299.99346 * 1 2 3 33 33 H 1.08988 * 109.47579 * 60.00060 * 1 2 3 34 34 H 1.09001 * 109.46478 * 240.00654 * 2 1 3 35 35 H 1.08989 * 109.47114 * 120.00199 * 2 1 3 36 36 H 1.08004 * 120.77980 * 0.02562 * 5 4 3 37 37 H 1.08004 * 120.27389 * 179.75515 * 6 5 4 38 38 H 1.08007 * 119.46924 * 179.97438 * 7 6 5 39 39 H 1.09002 * 109.62433 * 245.45774 * 13 12 10 40 40 H 1.08995 * 109.62821 * 5.83535 * 13 12 10 41 41 H 1.08995 * 109.50851 * 179.97438 * 16 14 13 42 42 H 1.09003 * 109.50957 * 300.04560 * 16 14 13 43 43 H 1.09005 * 109.42029 * 180.68838 * 17 16 14 44 44 H 1.08998 * 109.41894 * 300.55142 * 17 16 14 45 45 H 1.09003 * 109.38750 * 179.26380 * 18 17 16 46 46 H 1.09007 * 109.56199 * 59.18063 * 18 17 16 47 47 H 1.09007 * 109.62707 * 114.57241 * 21 12 10 48 48 H 1.09001 * 109.79004 * 354.09496 * 21 12 10 49 49 H 0.97001 * 119.99957 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3511 1.5251 -0.0005 5 6 4.2104 0.4281 -0.0066 6 6 5.5739 0.6595 -0.0008 7 6 6.0442 1.9649 0.0052 8 7 5.2154 2.9842 0.0049 9 6 3.8979 2.8126 -0.0006 10 6 3.0040 3.9900 -0.0014 11 8 2.0152 4.0028 0.7055 12 7 3.2854 5.0493 -0.7857 13 6 4.5170 5.0763 -1.5867 14 6 4.1384 5.3368 -3.0572 15 1 5.0304 5.5003 -3.6619 16 6 3.3296 4.1424 -3.5785 17 6 2.0630 3.9843 -2.7348 18 6 1.2096 5.2437 -2.8485 19 6 2.0052 6.4452 -2.3236 20 1 1.4346 7.3683 -2.4260 21 6 2.3644 6.1924 -0.8518 22 7 3.2653 6.5261 -3.0871 23 6 3.6055 7.6485 -3.7942 24 1 4.6446 7.8723 -3.9848 25 6 2.6145 8.4985 -4.2657 26 7 1.3837 8.0562 -4.4137 27 14 3.0277 10.2701 -4.6902 28 1 3.5483 10.3377 -6.0792 29 1 1.8041 11.1041 -4.5789 30 1 4.0593 10.7767 -3.7497 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3632 0.5138 0.8901 33 1 -0.3634 0.5138 -0.8899 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 3.8207 -0.5792 -0.0113 37 1 6.2668 -0.1689 -0.0012 38 1 7.1090 2.1461 0.0102 39 1 5.1696 5.8723 -1.2280 40 1 5.0291 4.1177 -1.5033 41 1 3.0550 4.3151 -4.6190 42 1 3.9312 3.2363 -3.5066 43 1 1.4920 3.1285 -3.0951 44 1 2.3394 3.8225 -1.6929 45 1 0.3027 5.1210 -2.2565 46 1 0.9436 5.4113 -3.8923 47 1 2.8476 7.0765 -0.4357 48 1 1.4591 5.9700 -0.2869 49 1 0.6913 8.6501 -4.7436 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040025669.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:12 Heat of formation + Delta-G solvation = 30.201308 kcal Electronic energy + Delta-G solvation = -33039.384524 eV Core-core repulsion = 28969.158850 eV Total energy + Delta-G solvation = -4070.225674 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.27243 -39.88907 -38.40614 -37.46217 -33.93555 -32.72501 -32.48848 -32.28092 -31.60079 -30.45044 -29.92674 -26.87406 -25.55742 -24.95453 -24.10533 -23.22359 -22.32733 -21.43909 -21.14790 -19.94120 -18.48665 -18.11722 -17.50864 -16.99068 -16.46654 -16.27742 -15.46961 -15.13406 -14.82658 -14.59502 -14.52669 -13.97688 -13.86724 -13.56398 -13.43615 -13.28425 -12.92449 -12.83070 -12.81998 -12.70104 -12.44253 -12.30297 -11.92220 -11.67977 -11.50873 -11.28091 -11.15115 -11.08160 -10.84221 -10.62568 -10.30088 -10.09929 -10.02149 -9.97794 -9.86794 -9.86097 -9.55123 -9.34691 -9.03283 -8.54798 -8.44712 -7.73670 -6.55767 -5.77736 -3.17463 0.69458 1.08321 2.89956 2.95964 3.38555 3.39602 3.46992 3.49655 3.70117 4.31029 4.43636 4.51078 4.53588 4.68803 4.74418 4.85715 4.97460 4.99349 5.21380 5.32413 5.36765 5.42263 5.62056 5.69224 5.78153 5.79763 5.83136 5.91814 5.93458 6.01133 6.03909 6.14311 6.23883 6.35128 6.45811 6.54862 6.59244 6.60261 6.69519 6.83609 6.99535 7.02164 7.08408 7.15921 7.23213 7.56563 7.65119 7.70542 7.80809 8.00071 8.41146 8.61291 9.18189 9.81741 10.43750 11.28868 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017160 B = 0.003841 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.275872 B = 7288.858974 C = 8036.446497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 O -0.282 6.282 4 C 0.133 3.867 5 C -0.175 4.175 6 C -0.115 4.115 7 C 0.052 3.948 8 N -0.412 5.412 9 C 0.060 3.940 10 C 0.576 3.424 11 O -0.535 6.535 12 N -0.571 5.571 13 C 0.093 3.907 14 C 0.149 3.851 15 H 0.076 0.924 16 C -0.121 4.121 17 C -0.136 4.136 18 C -0.112 4.112 19 C 0.178 3.822 20 H 0.116 0.884 21 C 0.092 3.908 22 N -0.578 5.578 23 C -0.250 4.250 24 H 0.067 0.933 25 C 0.004 3.996 26 N -0.894 5.894 27 Si 0.899 3.101 28 H -0.288 1.288 29 H -0.290 1.290 30 H -0.281 1.281 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.143 0.857 37 H 0.140 0.860 38 H 0.164 0.836 39 H 0.066 0.934 40 H 0.092 0.908 41 H 0.058 0.942 42 H 0.034 0.966 43 H 0.028 0.972 44 H 0.079 0.921 45 H 0.036 0.964 46 H 0.071 0.929 47 H 0.062 0.938 48 H 0.080 0.920 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.216 -18.246 8.211 20.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.025 4.025 3 O -0.192 6.192 4 C 0.082 3.918 5 C -0.202 4.202 6 C -0.135 4.135 7 C -0.107 4.107 8 N -0.124 5.124 9 C -0.079 4.079 10 C 0.363 3.637 11 O -0.412 6.412 12 N -0.303 5.303 13 C -0.032 4.032 14 C 0.041 3.959 15 H 0.095 0.905 16 C -0.160 4.160 17 C -0.174 4.174 18 C -0.151 4.151 19 C 0.071 3.929 20 H 0.133 0.867 21 C -0.031 4.031 22 N -0.299 5.299 23 C -0.379 4.379 24 H 0.085 0.915 25 C -0.195 4.195 26 N -0.538 5.538 27 Si 0.728 3.272 28 H -0.215 1.215 29 H -0.216 1.216 30 H -0.206 1.206 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.161 0.839 37 H 0.158 0.842 38 H 0.182 0.818 39 H 0.084 0.916 40 H 0.109 0.891 41 H 0.077 0.923 42 H 0.052 0.948 43 H 0.046 0.954 44 H 0.096 0.904 45 H 0.055 0.945 46 H 0.090 0.910 47 H 0.080 0.920 48 H 0.098 0.902 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.660 -17.073 8.508 19.637 hybrid contribution 0.040 -0.371 -0.488 0.614 sum 4.700 -17.444 8.021 19.767 Atomic orbital electron populations 1.21757 0.92229 1.02637 1.04270 1.22905 0.96685 0.81799 1.01117 1.86308 1.17170 1.29069 1.86695 1.19916 0.84103 0.93691 0.94071 1.21691 0.94187 0.98538 1.05743 1.22131 0.95164 0.98845 0.97365 1.22761 1.00005 0.87928 1.00031 1.67873 1.01574 1.34818 1.08103 1.20722 0.90477 0.91481 1.05218 1.17328 0.84279 0.81883 0.80241 1.90777 1.28006 1.80541 1.41926 1.47996 1.22878 1.17369 1.42012 1.22750 0.85199 1.02524 0.92699 1.21374 0.94174 0.87941 0.92423 0.90550 1.21930 0.97001 0.97047 1.00013 1.22016 0.96344 0.97420 1.01656 1.21695 0.96514 0.94788 1.02074 1.21152 0.87835 0.98627 0.85291 0.86673 1.22571 0.92847 0.86453 1.01205 1.44464 1.19770 1.10882 1.54831 1.19119 0.91995 0.98223 1.28546 0.91505 1.24944 0.96259 0.99348 0.98934 1.70025 1.01616 1.34139 1.48056 0.86382 0.77237 0.85396 0.78149 1.21512 1.21635 1.20624 0.90412 0.91147 0.91134 0.91953 0.91984 0.83912 0.84179 0.81842 0.91618 0.89076 0.92347 0.94752 0.95369 0.90359 0.94491 0.90990 0.91951 0.90163 0.93639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 10.28 37.16 0.38 -0.98 16 2 C 0.05 0.49 5.48 37.16 0.20 0.70 16 3 O -0.28 -4.22 8.97 -33.51 -0.30 -4.52 16 4 C 0.13 1.92 6.67 -38.56 -0.26 1.66 16 5 C -0.18 -1.80 9.13 -39.15 -0.36 -2.16 16 6 C -0.12 -1.01 10.10 -39.37 -0.40 -1.41 16 7 C 0.05 0.56 11.17 -17.56 -0.20 0.36 16 8 N -0.41 -6.06 7.43 -9.71 -0.07 -6.14 16 9 C 0.06 1.01 5.78 -82.88 -0.48 0.53 16 10 C 0.58 11.45 4.64 -12.34 -0.06 11.39 16 11 O -0.54 -11.94 15.63 -9.55 -0.15 -12.09 16 12 N -0.57 -11.40 1.65 -173.07 -0.29 -11.69 16 13 C 0.09 1.73 5.51 -3.24 -0.02 1.72 16 14 C 0.15 3.09 3.65 -66.60 -0.24 2.85 16 15 H 0.08 1.54 8.01 -51.93 -0.42 1.13 16 16 C -0.12 -2.42 5.59 -26.54 -0.15 -2.57 16 17 C -0.14 -2.82 5.53 -26.95 -0.15 -2.97 16 18 C -0.11 -2.54 5.55 -26.77 -0.15 -2.69 16 19 C 0.18 4.19 2.69 -66.85 -0.18 4.01 16 20 H 0.12 3.04 5.86 -51.92 -0.30 2.73 16 21 C 0.09 1.97 5.87 -3.49 -0.02 1.95 16 22 N -0.58 -13.97 2.53 -155.16 -0.39 -14.36 16 23 C -0.25 -6.60 9.70 -15.05 -0.15 -6.75 16 24 H 0.07 1.74 7.91 -52.49 -0.42 1.33 16 25 C 0.00 0.11 4.92 -17.43 -0.09 0.02 16 26 N -0.89 -24.95 11.16 55.49 0.62 -24.33 16 27 Si 0.90 21.27 29.60 -169.99 -5.03 16.24 16 28 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 29 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 30 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.71 8.14 -51.94 -0.42 0.29 16 34 H 0.06 0.51 7.68 -51.93 -0.40 0.11 16 35 H 0.06 0.49 7.71 -51.94 -0.40 0.09 16 36 H 0.14 1.03 6.46 -52.48 -0.34 0.69 16 37 H 0.14 0.72 8.06 -52.48 -0.42 0.29 16 38 H 0.16 1.20 8.06 -52.48 -0.42 0.78 16 39 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.09 1.56 4.64 -51.93 -0.24 1.32 16 41 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.08 1.61 2.40 -52.50 -0.13 1.49 16 45 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 46 H 0.07 1.82 8.06 -51.92 -0.42 1.41 16 47 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 48 H 0.08 1.71 7.01 -51.93 -0.36 1.35 16 49 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 374.02 15.07 5.64 5.64 Total: -1.00 -32.14 374.02 -9.48 -41.62 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -7.21 Total: 3.96 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: -2.30 Total: 5.66 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: -0.13 Total: -56.52 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -0.45 Total: -16.60 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.14 -9.48 -41.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040025669.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.826 kcal (2) G-P(sol) polarization free energy of solvation -32.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds