Wall clock time and date at job start Wed Apr 1 2020 05:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42898 * 109.46604 * 2 1 4 4 C 1.35649 * 116.99679 * 180.02562 * 3 2 1 5 5 C 1.39345 * 120.54233 * 0.26346 * 4 3 2 6 6 C 1.38305 * 118.43944 * 180.28927 * 5 4 3 7 7 C 1.38754 * 119.44614 * 359.73168 * 6 5 4 8 8 N 1.31373 * 121.06783 * 359.97438 * 7 6 5 9 9 C 1.32862 * 121.69720 * 0.02562 * 8 7 6 10 10 C 1.47827 * 119.78477 * 180.02562 * 9 8 7 11 11 O 1.21551 * 120.00229 * 222.46199 * 10 9 8 12 12 N 1.34780 * 120.00168 * 42.45746 * 10 9 8 13 13 C 1.46943 * 120.44085 * 356.54862 * 12 10 9 14 14 C 1.54065 * 108.50343 * 125.62684 * 13 12 10 15 15 H 1.09000 * 110.71456 * 172.22094 * 14 13 12 16 16 C 1.53368 * 108.80413 * 294.57359 * 14 13 12 17 17 C 1.53010 * 109.24575 * 60.02373 * 16 14 13 18 18 C 1.52557 * 109.67031 * 60.81390 * 17 16 14 19 19 C 1.53367 * 109.33240 * 299.17330 * 18 17 16 20 20 H 1.09008 * 111.08110 * 177.90003 * 19 18 17 21 21 C 1.46945 * 120.44458 * 176.52125 * 12 10 9 22 22 N 1.47558 * 107.98867 * 56.44426 * 19 18 17 23 23 C 1.36945 * 121.61437 * 122.26070 * 22 19 18 24 24 H 1.07992 * 120.00251 * 153.89832 * 23 22 19 25 25 C 1.38818 * 119.99648 * 333.90429 * 23 22 19 26 26 N 1.31618 * 119.99811 * 338.86876 * 25 23 22 27 27 Si 1.86797 * 119.99986 * 158.86647 * 25 23 22 28 28 H 1.48495 * 109.46792 * 84.99375 * 27 25 23 29 29 H 1.48500 * 109.47254 * 204.99595 * 27 25 23 30 30 H 1.48504 * 109.47127 * 324.99562 * 27 25 23 31 31 H 1.09002 * 109.46635 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46478 * 299.99346 * 1 2 3 33 33 H 1.08988 * 109.47579 * 60.00060 * 1 2 3 34 34 H 1.09001 * 109.46478 * 240.00654 * 2 1 3 35 35 H 1.08989 * 109.47114 * 120.00199 * 2 1 3 36 36 H 1.08004 * 120.77980 * 0.02562 * 5 4 3 37 37 H 1.08004 * 120.27389 * 179.75515 * 6 5 4 38 38 H 1.08007 * 119.46924 * 179.97438 * 7 6 5 39 39 H 1.09002 * 109.62433 * 245.45774 * 13 12 10 40 40 H 1.08995 * 109.62821 * 5.83535 * 13 12 10 41 41 H 1.08995 * 109.50851 * 179.97438 * 16 14 13 42 42 H 1.09003 * 109.50957 * 300.04560 * 16 14 13 43 43 H 1.09005 * 109.42029 * 180.68838 * 17 16 14 44 44 H 1.08998 * 109.41894 * 300.55142 * 17 16 14 45 45 H 1.09003 * 109.38750 * 179.26380 * 18 17 16 46 46 H 1.09007 * 109.56199 * 59.18063 * 18 17 16 47 47 H 1.09007 * 109.62707 * 114.57241 * 21 12 10 48 48 H 1.09001 * 109.79004 * 354.09496 * 21 12 10 49 49 H 0.97001 * 119.99957 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3511 1.5251 -0.0005 5 6 4.2104 0.4281 -0.0066 6 6 5.5739 0.6595 -0.0008 7 6 6.0442 1.9649 0.0052 8 7 5.2154 2.9842 0.0049 9 6 3.8979 2.8126 -0.0006 10 6 3.0040 3.9900 -0.0014 11 8 2.0152 4.0028 0.7055 12 7 3.2854 5.0493 -0.7857 13 6 4.5170 5.0763 -1.5867 14 6 4.1384 5.3368 -3.0572 15 1 5.0304 5.5003 -3.6619 16 6 3.3296 4.1424 -3.5785 17 6 2.0630 3.9843 -2.7348 18 6 1.2096 5.2437 -2.8485 19 6 2.0052 6.4452 -2.3236 20 1 1.4346 7.3683 -2.4260 21 6 2.3644 6.1924 -0.8518 22 7 3.2653 6.5261 -3.0871 23 6 3.6055 7.6485 -3.7942 24 1 4.6446 7.8723 -3.9848 25 6 2.6145 8.4985 -4.2657 26 7 1.3837 8.0562 -4.4137 27 14 3.0277 10.2701 -4.6902 28 1 3.5483 10.3377 -6.0792 29 1 1.8041 11.1041 -4.5789 30 1 4.0593 10.7767 -3.7497 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3632 0.5138 0.8901 33 1 -0.3634 0.5138 -0.8899 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 3.8207 -0.5792 -0.0113 37 1 6.2668 -0.1689 -0.0012 38 1 7.1090 2.1461 0.0102 39 1 5.1696 5.8723 -1.2280 40 1 5.0291 4.1177 -1.5033 41 1 3.0550 4.3151 -4.6190 42 1 3.9312 3.2363 -3.5066 43 1 1.4920 3.1285 -3.0951 44 1 2.3394 3.8225 -1.6929 45 1 0.3027 5.1210 -2.2565 46 1 0.9436 5.4113 -3.8923 47 1 2.8476 7.0765 -0.4357 48 1 1.4591 5.9700 -0.2869 49 1 0.6913 8.6501 -4.7436 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040025669.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:10 Heat of formation + Delta-G solvation = 12.007634 kcal Electronic energy + Delta-G solvation = -33040.173461 eV Core-core repulsion = 28969.158850 eV Total energy + Delta-G solvation = -4071.014611 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.50934 -41.18675 -39.34185 -39.05560 -35.65991 -34.47433 -33.74646 -33.14385 -33.02297 -32.20546 -30.96927 -28.57483 -27.21482 -26.08631 -25.36250 -24.66293 -23.21206 -23.03119 -22.88421 -21.32428 -20.07006 -19.29350 -18.86844 -18.17205 -17.81538 -17.28040 -16.89511 -16.59315 -16.43574 -16.02958 -15.72601 -15.35501 -15.22956 -15.04255 -14.74362 -14.64783 -14.51403 -14.32766 -14.03223 -13.67750 -13.64084 -13.47351 -13.38673 -13.22265 -13.11580 -13.00087 -12.54510 -12.45111 -12.27126 -12.18401 -11.87874 -11.81819 -11.78843 -11.67419 -11.34895 -11.16828 -11.14160 -10.76199 -10.44577 -10.35188 -9.55440 -9.39124 -8.48111 -7.81197 -5.23809 -0.22991 0.25816 1.48409 1.52019 1.59993 1.63581 1.96274 2.10836 2.54042 2.73379 3.18381 3.30646 3.51167 3.63756 3.74807 4.02871 4.02920 4.04751 4.11875 4.14711 4.16031 4.22070 4.26031 4.33413 4.38211 4.41716 4.54219 4.69537 4.74996 4.78081 4.79823 4.84750 4.90058 4.92155 4.96250 5.01368 5.05343 5.11138 5.21185 5.24559 5.28658 5.39250 5.49105 5.52977 5.65849 5.71556 5.81380 6.24837 6.39996 6.46230 6.79311 7.12659 7.15461 7.84384 8.44264 9.22530 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017160 B = 0.003841 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.275872 B = 7288.858974 C = 8036.446497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.041 3.959 3 O -0.320 6.320 4 C 0.119 3.881 5 C -0.168 4.168 6 C -0.089 4.089 7 C 0.053 3.947 8 N -0.438 5.438 9 C 0.014 3.986 10 C 0.574 3.426 11 O -0.573 6.573 12 N -0.577 5.577 13 C 0.105 3.895 14 C 0.143 3.857 15 H 0.084 0.916 16 C -0.110 4.110 17 C -0.132 4.132 18 C -0.103 4.103 19 C 0.181 3.819 20 H 0.082 0.918 21 C 0.103 3.897 22 N -0.592 5.592 23 C -0.258 4.258 24 H 0.070 0.930 25 C -0.044 4.044 26 N -0.922 5.922 27 Si 0.960 3.040 28 H -0.286 1.286 29 H -0.297 1.297 30 H -0.275 1.275 31 H 0.110 0.890 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.179 0.821 37 H 0.191 0.809 38 H 0.199 0.801 39 H 0.063 0.937 40 H 0.117 0.883 41 H 0.036 0.964 42 H 0.065 0.935 43 H 0.033 0.967 44 H 0.087 0.913 45 H 0.033 0.967 46 H 0.039 0.961 47 H 0.059 0.941 48 H 0.073 0.927 49 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.323 -21.737 8.810 24.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.033 4.033 3 O -0.232 6.232 4 C 0.069 3.931 5 C -0.194 4.194 6 C -0.108 4.108 7 C -0.109 4.109 8 N -0.151 5.151 9 C -0.122 4.122 10 C 0.364 3.636 11 O -0.452 6.452 12 N -0.308 5.308 13 C -0.018 4.018 14 C 0.036 3.964 15 H 0.102 0.898 16 C -0.149 4.149 17 C -0.170 4.170 18 C -0.142 4.142 19 C 0.074 3.926 20 H 0.100 0.900 21 C -0.022 4.022 22 N -0.313 5.313 23 C -0.388 4.388 24 H 0.088 0.912 25 C -0.240 4.240 26 N -0.567 5.567 27 Si 0.789 3.211 28 H -0.213 1.213 29 H -0.224 1.224 30 H -0.200 1.200 31 H 0.129 0.871 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.196 0.804 37 H 0.208 0.792 38 H 0.216 0.784 39 H 0.081 0.919 40 H 0.134 0.866 41 H 0.054 0.946 42 H 0.084 0.916 43 H 0.052 0.948 44 H 0.104 0.896 45 H 0.052 0.948 46 H 0.058 0.942 47 H 0.077 0.923 48 H 0.091 0.909 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 7.782 -20.581 9.110 23.815 hybrid contribution -0.848 0.540 -0.616 1.179 sum 6.934 -20.041 8.494 22.845 Atomic orbital electron populations 1.21810 0.92387 1.04203 1.02509 1.23239 0.96684 0.80211 1.03175 1.86269 1.17985 1.32036 1.86917 1.20113 0.84524 0.94050 0.94407 1.22145 0.94370 0.98785 1.04073 1.22707 0.95231 0.99501 0.93351 1.23493 1.01030 0.88087 0.98262 1.67706 1.00997 1.37021 1.09359 1.20171 0.91047 0.90723 1.10253 1.17947 0.84317 0.82415 0.78959 1.90731 1.29939 1.81349 1.43202 1.48014 1.22891 1.17185 1.42676 1.22682 0.84647 1.03812 0.90681 1.21599 0.93856 0.86830 0.94157 0.89778 1.21808 0.96802 0.98080 0.98250 1.21983 0.96419 0.96137 1.02435 1.21547 0.96908 0.96001 0.99742 1.20924 0.87705 0.97320 0.86684 0.90025 1.22229 0.93197 0.87417 0.99318 1.44606 1.20187 1.11783 1.54739 1.19427 0.92165 0.99229 1.27937 0.91189 1.25612 0.96246 1.02521 0.99606 1.70180 1.02340 1.34859 1.49363 0.85412 0.76604 0.81214 0.77854 1.21254 1.22360 1.19984 0.87125 0.92743 0.93056 0.89832 0.89661 0.80416 0.79200 0.78402 0.91862 0.86573 0.94553 0.91633 0.94801 0.89569 0.94789 0.94210 0.92280 0.90876 0.94323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 10.28 71.98 0.74 -1.85 16 2 C 0.04 0.71 5.48 71.98 0.39 1.10 16 3 O -0.32 -9.29 8.97 -75.42 -0.68 -9.96 16 4 C 0.12 3.19 6.67 22.93 0.15 3.34 16 5 C -0.17 -2.62 9.13 22.55 0.21 -2.42 16 6 C -0.09 -1.00 10.10 22.41 0.23 -0.78 16 7 C 0.05 0.86 11.17 84.88 0.95 1.81 16 8 N -0.44 -11.76 7.43 -184.64 -1.37 -13.13 16 9 C 0.01 0.46 5.78 41.92 0.24 0.70 16 10 C 0.57 23.15 4.64 86.78 0.40 23.55 16 11 O -0.57 -26.55 15.63 10.34 0.16 -26.39 16 12 N -0.58 -23.39 1.65 -819.75 -1.35 -24.74 16 13 C 0.11 3.88 5.51 86.66 0.48 4.35 16 14 C 0.14 5.88 3.65 45.27 0.17 6.04 16 15 H 0.08 3.31 8.01 -2.39 -0.02 3.30 16 16 C -0.11 -4.37 5.59 30.72 0.17 -4.20 16 17 C -0.13 -5.54 5.53 30.45 0.17 -5.37 16 18 C -0.10 -4.93 5.55 30.57 0.17 -4.76 16 19 C 0.18 8.96 2.69 45.11 0.12 9.08 16 20 H 0.08 4.60 5.86 -2.38 -0.01 4.59 16 21 C 0.10 4.58 5.87 86.49 0.51 5.09 16 22 N -0.59 -29.34 2.53 -644.81 -1.63 -30.97 16 23 C -0.26 -13.91 9.70 84.03 0.82 -13.10 16 24 H 0.07 3.66 7.91 -2.91 -0.02 3.64 16 25 C -0.04 -2.41 4.92 84.86 0.42 -1.99 16 26 N -0.92 -53.76 11.16 21.65 0.24 -53.52 16 27 Si 0.96 44.85 29.60 68.60 2.03 46.88 16 28 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 29 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 30 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 31 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.08 1.05 7.68 -2.39 -0.02 1.04 16 35 H 0.09 1.04 7.71 -2.39 -0.02 1.02 16 36 H 0.18 1.45 6.46 -2.91 -0.02 1.43 16 37 H 0.19 0.33 8.06 -2.91 -0.02 0.31 16 38 H 0.20 1.74 8.06 -2.91 -0.02 1.72 16 39 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.12 3.75 4.64 -2.39 -0.01 3.74 16 41 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 44 H 0.09 3.60 2.40 -3.52 -0.01 3.59 16 45 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 46 H 0.04 2.13 8.06 -2.38 -0.02 2.11 16 47 H 0.06 2.62 8.14 -2.38 -0.02 2.60 16 48 H 0.07 3.33 7.01 -2.39 -0.02 3.32 16 49 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 Total: -1.00 -75.53 374.02 4.69 -70.84 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: 0.96 Total: 20.38 kcal Atomic # 6 Polarization: 14.29 SS G_CDS: 6.33 Total: 20.62 kcal Atomic # 7 Polarization: -118.25 SS G_CDS: -4.12 Total: -122.37 kcal Atomic # 8 Polarization: -35.83 SS G_CDS: -0.51 Total: -36.35 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -75.53 4.69 -70.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040025669.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.851 kcal (2) G-P(sol) polarization free energy of solvation -75.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds