Wall clock time and date at job start Wed Apr 1 2020 05:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42904 * 109.47126 * 2 1 4 4 C 1.35682 * 116.99866 * 179.97438 * 3 2 1 5 5 C 1.38894 * 119.62325 * 179.97438 * 4 3 2 6 6 C 1.39569 * 118.95014 * 180.02562 * 5 4 3 7 7 C 1.48163 * 120.89317 * 180.02562 * 6 5 4 8 8 O 1.21512 * 119.99845 * 24.07914 * 7 6 5 9 9 N 1.34775 * 120.00335 * 204.08020 * 7 6 5 10 10 C 1.47612 * 126.91399 * 356.52292 * 9 7 6 11 11 C 1.54355 * 107.21792 * 155.10112 * 10 9 7 12 12 C 1.53088 * 104.62601 * 2.12073 * 11 10 9 13 13 C 1.53636 * 111.78976 * 141.29170 * 12 11 10 14 14 C 1.55188 * 101.41710 * 155.66607 * 13 12 11 15 15 N 1.47564 * 105.00787 * 324.52024 * 14 13 12 16 16 C 1.36931 * 125.67682 * 203.84123 * 15 14 13 17 17 H 1.07998 * 120.00342 * 180.02562 * 16 15 14 18 18 C 1.38816 * 119.99725 * 0.02562 * 16 15 14 19 19 N 1.31612 * 120.00131 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99825 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47068 * 90.00144 * 20 18 16 22 22 H 1.48496 * 109.47252 * 210.00031 * 20 18 16 23 23 H 1.48508 * 109.47527 * 330.00317 * 20 18 16 24 24 C 1.47412 * 108.64860 * 23.85921 * 15 14 13 25 25 C 1.48681 * 127.06856 * 176.36100 * 9 7 6 26 26 C 1.39966 * 118.21395 * 0.26993 * 6 5 4 27 27 C 1.37969 * 119.13576 * 359.48307 * 26 6 5 28 28 N 1.31913 * 120.97619 * 0.53120 * 27 26 6 29 29 H 1.09004 * 109.46776 * 60.00261 * 1 2 3 30 30 H 1.09004 * 109.46812 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47377 * 299.99933 * 1 2 3 32 32 H 1.09000 * 109.47377 * 240.00067 * 2 1 3 33 33 H 1.09006 * 109.47257 * 119.99940 * 2 1 3 34 34 H 1.08002 * 120.52555 * 359.97438 * 5 4 3 35 35 H 1.09004 * 109.92371 * 35.65037 * 10 9 7 36 36 H 1.09000 * 109.91956 * 274.54759 * 10 9 7 37 37 H 1.09003 * 110.40699 * 120.91126 * 11 10 9 38 38 H 1.09006 * 110.40155 * 243.21976 * 11 10 9 39 39 H 1.09001 * 111.03453 * 273.70115 * 13 12 11 40 40 H 1.09001 * 111.03778 * 37.62684 * 13 12 11 41 41 H 1.09001 * 110.33378 * 205.63826 * 14 13 12 42 42 H 1.08997 * 110.42245 * 83.45121 * 14 13 12 43 43 H 0.96998 * 119.99992 * 180.02562 * 19 18 16 44 44 H 1.09004 * 109.98474 * 238.52892 * 24 15 14 45 45 H 1.08997 * 110.01988 * 117.24268 * 24 15 14 46 46 H 1.09000 * 110.53763 * 99.07104 * 25 9 7 47 47 H 1.09005 * 110.85855 * 336.05272 * 25 9 7 48 48 H 1.08006 * 120.43080 * 179.71004 * 26 6 5 49 49 H 1.08002 * 119.51695 * 180.24789 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3515 1.5251 0.0005 5 6 3.8739 2.8120 0.0000 6 6 5.2596 2.9785 0.0000 7 6 5.8632 4.3317 0.0001 8 8 5.2332 5.2779 0.4294 9 7 7.1109 4.5131 -0.4761 10 6 8.0339 3.4698 -0.9644 11 6 9.0114 4.1483 -1.9476 12 6 8.6119 5.6260 -1.9319 13 6 9.8385 6.5491 -1.9924 14 6 9.2220 7.8402 -2.5935 15 7 8.2004 7.3675 -3.5477 16 6 7.7261 8.0701 -4.6230 17 1 6.9743 7.6340 -5.2640 18 6 8.2116 9.3430 -4.8892 19 7 9.1282 9.8744 -4.1083 20 14 7.5651 10.3013 -6.3565 21 1 6.3883 11.1068 -5.9422 22 1 8.6285 11.2042 -6.8656 23 1 7.1644 9.3547 -7.4285 24 6 7.7752 6.0131 -3.1504 25 6 7.8365 5.8028 -0.6199 26 6 6.0638 1.8330 -0.0052 27 6 5.4635 0.5908 0.0007 28 7 4.1497 0.4716 0.0006 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.2183 3.6702 -0.0012 35 1 7.4733 2.6886 -1.4779 36 1 8.5862 3.0415 -0.1279 37 1 10.0393 4.0288 -1.6048 38 1 8.8944 3.7317 -2.9480 39 1 10.2386 6.7340 -0.9955 40 1 10.6050 6.1387 -2.6498 41 1 9.9862 8.4188 -3.1126 42 1 8.7597 8.4412 -1.8105 43 1 9.4672 10.7640 -4.2941 44 1 7.9565 5.3118 -3.9649 45 1 6.7168 6.0157 -2.8900 46 1 8.5212 5.9515 0.2150 47 1 7.1370 6.6354 -0.6953 48 1 7.1403 1.9203 -0.0101 49 1 6.0781 -0.2973 0.0007 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041659408.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:05 Heat of formation + Delta-G solvation = 12.027980 kcal Electronic energy + Delta-G solvation = -30339.542984 eV Core-core repulsion = 26268.529255 eV Total energy + Delta-G solvation = -4071.013729 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.18537 -40.15893 -38.64289 -37.88718 -35.80749 -33.22573 -32.56858 -32.29586 -30.63857 -30.28913 -29.30108 -28.08426 -26.31991 -25.09827 -24.07669 -23.70642 -22.76004 -22.27386 -20.33230 -20.26032 -18.97976 -18.26134 -17.48828 -16.84110 -16.61251 -16.34841 -16.08027 -15.65116 -15.45047 -14.85539 -14.57968 -14.39208 -14.32447 -14.16241 -13.83024 -13.69698 -13.45282 -13.03755 -12.88810 -12.66997 -12.51674 -12.23558 -12.08317 -11.90348 -11.68977 -11.57167 -11.47852 -11.22189 -11.08369 -10.89883 -10.80127 -10.40668 -10.25389 -10.16661 -10.06810 -9.93956 -9.79193 -9.75064 -9.51290 -8.84125 -8.68807 -8.63106 -6.82568 -5.64541 -3.05621 0.50296 0.84187 2.48864 2.76271 2.96059 3.41341 3.46361 3.47851 3.54020 3.94508 4.16274 4.47683 4.54432 4.61812 4.67245 4.70738 4.71382 4.78332 4.91333 4.92758 5.03857 5.18846 5.28099 5.30377 5.40491 5.43610 5.47022 5.48817 5.51481 5.69232 5.74146 5.76939 5.77785 5.85042 5.93481 5.99069 6.06293 6.14069 6.27404 6.33134 6.52935 6.58947 6.74948 6.82220 6.93759 7.45010 7.48045 7.50832 7.63046 7.85276 8.02610 8.36164 9.22957 9.83489 10.48369 11.39597 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014500 B = 0.002452 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.537738 B =11414.783459 C =12580.207499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.067 3.933 3 O -0.304 6.304 4 C 0.322 3.678 5 C -0.135 4.135 6 C -0.041 4.041 7 C 0.574 3.426 8 O -0.525 6.525 9 N -0.608 5.608 10 C 0.090 3.910 11 C -0.120 4.120 12 C -0.083 4.083 13 C -0.130 4.130 14 C 0.151 3.849 15 N -0.604 5.604 16 C -0.221 4.221 17 H 0.076 0.924 18 C -0.012 4.012 19 N -0.922 5.922 20 Si 0.914 3.086 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.282 1.282 24 C 0.152 3.848 25 C 0.126 3.874 26 C -0.197 4.197 27 C 0.136 3.864 28 N -0.530 5.530 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.153 0.847 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.106 0.894 42 H 0.013 0.987 43 H 0.252 0.748 44 H 0.025 0.975 45 H 0.021 0.979 46 H 0.074 0.926 47 H 0.091 0.909 48 H 0.156 0.844 49 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.015 -22.641 10.289 25.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.009 4.009 3 O -0.212 6.212 4 C 0.143 3.857 5 C -0.156 4.156 6 C -0.052 4.052 7 C 0.362 3.638 8 O -0.401 6.401 9 N -0.342 5.342 10 C -0.033 4.033 11 C -0.158 4.158 12 C -0.084 4.084 13 C -0.169 4.169 14 C 0.027 3.973 15 N -0.330 5.330 16 C -0.349 4.349 17 H 0.094 0.906 18 C -0.207 4.207 19 N -0.571 5.571 20 Si 0.744 3.256 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.027 3.973 25 C 0.004 3.996 26 C -0.217 4.217 27 C -0.019 4.019 28 N -0.255 5.255 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.171 0.829 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.124 0.876 42 H 0.031 0.969 43 H 0.062 0.938 44 H 0.043 0.957 45 H 0.039 0.961 46 H 0.092 0.908 47 H 0.110 0.890 48 H 0.173 0.827 49 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -6.042 -22.559 10.444 25.583 hybrid contribution 0.047 1.008 -0.726 1.243 sum -5.995 -21.551 9.719 24.390 Atomic orbital electron populations 1.21832 0.92923 1.02907 1.03510 1.22626 0.94840 0.80876 1.02513 1.86266 1.16454 1.30821 1.87620 1.19587 0.84236 0.89376 0.92541 1.21115 0.94480 0.96511 1.03512 1.20077 0.93190 0.93902 0.98014 1.17661 0.80051 0.87636 0.78440 1.90825 1.60818 1.42082 1.46398 1.48822 1.13202 1.10351 1.61777 1.22639 0.91687 0.91472 0.97504 1.22446 0.98690 0.95071 0.99622 1.21583 0.97367 0.94275 0.95195 1.22858 0.95311 0.98397 1.00337 1.22002 0.92893 0.91097 0.91353 1.44628 1.45634 1.12752 1.29986 1.19063 1.17504 0.96652 1.01702 0.90611 1.24771 0.99386 0.97227 0.99300 1.69788 1.32031 1.16318 1.38990 0.86080 0.77812 0.79787 0.81871 1.21631 1.21653 1.20741 1.21104 0.95334 0.88635 0.92265 1.22470 0.94905 0.85659 0.96519 1.22744 1.02464 0.92499 1.03987 1.22379 0.88939 0.97194 0.93382 1.67191 1.06917 1.33299 1.18074 0.91516 0.90256 0.91568 0.91525 0.91581 0.82941 0.90019 0.91014 0.90130 0.90112 0.91968 0.91519 0.87625 0.96937 0.93754 0.95688 0.96149 0.90792 0.89039 0.82682 0.81714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.28 37.16 0.38 -0.59 16 2 C 0.07 0.57 6.03 37.16 0.22 0.79 16 3 O -0.30 -3.53 10.11 -18.75 -0.19 -3.72 16 4 C 0.32 3.92 7.49 -17.16 -0.13 3.79 16 5 C -0.13 -1.76 9.62 -38.84 -0.37 -2.13 16 6 C -0.04 -0.52 5.79 -104.68 -0.61 -1.13 16 7 C 0.57 8.94 7.75 -12.19 -0.09 8.85 16 8 O -0.52 -10.20 16.95 5.36 0.09 -10.11 16 9 N -0.61 -8.52 3.32 -170.90 -0.57 -9.09 16 10 C 0.09 0.90 5.12 -2.72 -0.01 0.89 16 11 C -0.12 -1.38 6.15 -25.98 -0.16 -1.54 16 12 C -0.08 -1.33 0.68 -154.02 -0.11 -1.43 16 13 C -0.13 -2.25 5.94 -25.24 -0.15 -2.40 16 14 C 0.15 3.57 5.84 -2.30 -0.01 3.56 16 15 N -0.60 -15.39 3.41 -170.41 -0.58 -15.97 16 16 C -0.22 -6.21 10.28 -15.06 -0.15 -6.37 16 17 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 18 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 19 N -0.92 -26.88 10.09 55.49 0.56 -26.32 16 20 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 C 0.15 3.16 6.46 -3.65 -0.02 3.13 16 25 C 0.13 1.98 5.83 -2.62 -0.02 1.97 16 26 C -0.20 -1.84 8.14 -39.03 -0.32 -2.16 16 27 C 0.14 1.18 11.17 -17.62 -0.20 0.98 16 28 N -0.53 -5.79 9.18 -13.38 -0.12 -5.91 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 33 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 34 H 0.15 2.06 7.91 -52.49 -0.42 1.64 16 35 H 0.08 0.72 5.97 -51.93 -0.31 0.41 16 36 H 0.07 0.54 7.48 -51.93 -0.39 0.15 16 37 H 0.08 0.78 7.89 -51.93 -0.41 0.37 16 38 H 0.08 0.93 7.43 -51.93 -0.39 0.54 16 39 H 0.06 0.93 7.78 -51.93 -0.40 0.53 16 40 H 0.07 1.12 8.08 -51.93 -0.42 0.70 16 41 H 0.11 2.82 5.89 -51.93 -0.31 2.51 16 42 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 44 H 0.03 0.51 7.45 -51.93 -0.39 0.13 16 45 H 0.02 0.46 7.80 -51.93 -0.41 0.05 16 46 H 0.07 1.04 7.83 -51.93 -0.41 0.63 16 47 H 0.09 1.77 7.77 -51.93 -0.40 1.36 16 48 H 0.16 1.09 4.49 -52.48 -0.24 0.85 16 49 H 0.17 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 388.74 15.07 5.86 5.86 Total: -1.00 -33.88 388.74 -9.20 -43.08 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -7.38 Total: -0.91 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: -1.84 Total: 5.79 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: -0.71 Total: -57.30 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: -0.10 Total: -13.83 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.88 -9.20 -43.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041659408.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.103 kcal (2) G-P(sol) polarization free energy of solvation -33.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds