Wall clock time and date at job start Wed Apr 1 2020 05:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42904 * 109.47126 * 2 1 4 4 C 1.35682 * 116.99866 * 179.97438 * 3 2 1 5 5 C 1.38894 * 119.62325 * 179.97438 * 4 3 2 6 6 C 1.39569 * 118.95014 * 180.02562 * 5 4 3 7 7 C 1.48163 * 120.89317 * 180.02562 * 6 5 4 8 8 O 1.21512 * 119.99845 * 24.07914 * 7 6 5 9 9 N 1.34775 * 120.00335 * 204.08020 * 7 6 5 10 10 C 1.47612 * 126.91399 * 356.52292 * 9 7 6 11 11 C 1.54355 * 107.21792 * 155.10112 * 10 9 7 12 12 C 1.53088 * 104.62601 * 2.12073 * 11 10 9 13 13 C 1.53636 * 111.78976 * 141.29170 * 12 11 10 14 14 C 1.55188 * 101.41710 * 155.66607 * 13 12 11 15 15 N 1.47564 * 105.00787 * 324.52024 * 14 13 12 16 16 C 1.36931 * 125.67682 * 203.84123 * 15 14 13 17 17 H 1.07998 * 120.00342 * 180.02562 * 16 15 14 18 18 C 1.38816 * 119.99725 * 0.02562 * 16 15 14 19 19 N 1.31612 * 120.00131 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99825 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47068 * 90.00144 * 20 18 16 22 22 H 1.48496 * 109.47252 * 210.00031 * 20 18 16 23 23 H 1.48508 * 109.47527 * 330.00317 * 20 18 16 24 24 C 1.47412 * 108.64860 * 23.85921 * 15 14 13 25 25 C 1.48681 * 127.06856 * 176.36100 * 9 7 6 26 26 C 1.39966 * 118.21395 * 0.26993 * 6 5 4 27 27 C 1.37969 * 119.13576 * 359.48307 * 26 6 5 28 28 N 1.31913 * 120.97619 * 0.53120 * 27 26 6 29 29 H 1.09004 * 109.46776 * 60.00261 * 1 2 3 30 30 H 1.09004 * 109.46812 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47377 * 299.99933 * 1 2 3 32 32 H 1.09000 * 109.47377 * 240.00067 * 2 1 3 33 33 H 1.09006 * 109.47257 * 119.99940 * 2 1 3 34 34 H 1.08002 * 120.52555 * 359.97438 * 5 4 3 35 35 H 1.09004 * 109.92371 * 35.65037 * 10 9 7 36 36 H 1.09000 * 109.91956 * 274.54759 * 10 9 7 37 37 H 1.09003 * 110.40699 * 120.91126 * 11 10 9 38 38 H 1.09006 * 110.40155 * 243.21976 * 11 10 9 39 39 H 1.09001 * 111.03453 * 273.70115 * 13 12 11 40 40 H 1.09001 * 111.03778 * 37.62684 * 13 12 11 41 41 H 1.09001 * 110.33378 * 205.63826 * 14 13 12 42 42 H 1.08997 * 110.42245 * 83.45121 * 14 13 12 43 43 H 0.96998 * 119.99992 * 180.02562 * 19 18 16 44 44 H 1.09004 * 109.98474 * 238.52892 * 24 15 14 45 45 H 1.08997 * 110.01988 * 117.24268 * 24 15 14 46 46 H 1.09000 * 110.53763 * 99.07104 * 25 9 7 47 47 H 1.09005 * 110.85855 * 336.05272 * 25 9 7 48 48 H 1.08006 * 120.43080 * 179.71004 * 26 6 5 49 49 H 1.08002 * 119.51695 * 180.24789 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3515 1.5251 0.0005 5 6 3.8739 2.8120 0.0000 6 6 5.2596 2.9785 0.0000 7 6 5.8632 4.3317 0.0001 8 8 5.2332 5.2779 0.4294 9 7 7.1109 4.5131 -0.4761 10 6 8.0339 3.4698 -0.9644 11 6 9.0114 4.1483 -1.9476 12 6 8.6119 5.6260 -1.9319 13 6 9.8385 6.5491 -1.9924 14 6 9.2220 7.8402 -2.5935 15 7 8.2004 7.3675 -3.5477 16 6 7.7261 8.0701 -4.6230 17 1 6.9743 7.6340 -5.2640 18 6 8.2116 9.3430 -4.8892 19 7 9.1282 9.8744 -4.1083 20 14 7.5651 10.3013 -6.3565 21 1 6.3883 11.1068 -5.9422 22 1 8.6285 11.2042 -6.8656 23 1 7.1644 9.3547 -7.4285 24 6 7.7752 6.0131 -3.1504 25 6 7.8365 5.8028 -0.6199 26 6 6.0638 1.8330 -0.0052 27 6 5.4635 0.5908 0.0007 28 7 4.1497 0.4716 0.0006 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.2183 3.6702 -0.0012 35 1 7.4733 2.6886 -1.4779 36 1 8.5862 3.0415 -0.1279 37 1 10.0393 4.0288 -1.6048 38 1 8.8944 3.7317 -2.9480 39 1 10.2386 6.7340 -0.9955 40 1 10.6050 6.1387 -2.6498 41 1 9.9862 8.4188 -3.1126 42 1 8.7597 8.4412 -1.8105 43 1 9.4672 10.7640 -4.2941 44 1 7.9565 5.3118 -3.9649 45 1 6.7168 6.0157 -2.8900 46 1 8.5212 5.9515 0.2150 47 1 7.1370 6.6354 -0.6953 48 1 7.1403 1.9203 -0.0101 49 1 6.0781 -0.2973 0.0007 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041659408.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:04 Heat of formation + Delta-G solvation = -11.795013 kcal Electronic energy + Delta-G solvation = -30340.576027 eV Core-core repulsion = 26268.529255 eV Total energy + Delta-G solvation = -4072.046772 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.12774 -41.24755 -39.85852 -38.84392 -37.31604 -34.72470 -33.72683 -33.08416 -32.12989 -31.08977 -30.77353 -29.46604 -27.79048 -26.61698 -25.15101 -24.60643 -23.73806 -23.26222 -22.19469 -21.21277 -20.26198 -19.36029 -18.78507 -18.37824 -17.42035 -17.26706 -17.07815 -16.89677 -16.66075 -16.51406 -15.98453 -15.56985 -15.33528 -15.14601 -14.94198 -14.79544 -14.72745 -14.26768 -13.99251 -13.69738 -13.51961 -13.37486 -13.27259 -13.17234 -13.13460 -12.87908 -12.75966 -12.61698 -12.51410 -12.30679 -12.03083 -11.82918 -11.75023 -11.57865 -11.46538 -11.37022 -11.19122 -11.07304 -10.75936 -10.68518 -9.83772 -9.59798 -8.90401 -7.79995 -5.23949 -0.41853 0.04637 1.42495 1.44888 1.47934 1.53276 1.73428 2.06235 2.46602 2.68426 3.13602 3.26191 3.30806 3.51816 3.62927 3.67597 3.81268 3.87273 3.91041 4.05015 4.08084 4.16665 4.23670 4.28466 4.37012 4.44317 4.55829 4.57149 4.66440 4.68219 4.70132 4.76197 4.81375 4.86576 4.89239 4.93384 4.97607 5.08797 5.09529 5.17787 5.19424 5.30739 5.37141 5.38743 5.43104 5.66741 5.82501 6.16436 6.30504 6.36419 6.68711 6.87115 7.09403 7.76347 8.39888 9.21371 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014500 B = 0.002452 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.537738 B =11414.783459 C =12580.207499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 O -0.323 6.323 4 C 0.313 3.687 5 C -0.162 4.162 6 C -0.053 4.053 7 C 0.567 3.433 8 O -0.583 6.583 9 N -0.606 5.606 10 C 0.084 3.916 11 C -0.110 4.110 12 C -0.073 4.073 13 C -0.110 4.110 14 C 0.150 3.850 15 N -0.627 5.627 16 C -0.241 4.241 17 H 0.073 0.927 18 C -0.066 4.066 19 N -0.946 5.946 20 Si 0.978 3.022 21 H -0.292 1.292 22 H -0.288 1.288 23 H -0.269 1.269 24 C 0.150 3.850 25 C 0.127 3.873 26 C -0.179 4.179 27 C 0.148 3.852 28 N -0.533 5.533 29 H 0.061 0.939 30 H 0.103 0.897 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.129 0.871 35 H 0.101 0.899 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.073 0.927 42 H -0.022 1.022 43 H 0.248 0.752 44 H 0.034 0.966 45 H -0.007 1.007 46 H 0.100 0.900 47 H 0.039 0.961 48 H 0.190 0.810 49 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.998 -26.939 10.550 29.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.231 6.231 4 C 0.135 3.865 5 C -0.184 4.184 6 C -0.064 4.064 7 C 0.356 3.644 8 O -0.464 6.464 9 N -0.338 5.338 10 C -0.036 4.036 11 C -0.148 4.148 12 C -0.075 4.075 13 C -0.148 4.148 14 C 0.025 3.975 15 N -0.353 5.353 16 C -0.370 4.370 17 H 0.091 0.909 18 C -0.259 4.259 19 N -0.595 5.595 20 Si 0.806 3.194 21 H -0.219 1.219 22 H -0.214 1.214 23 H -0.194 1.194 24 C 0.025 3.975 25 C 0.005 3.995 26 C -0.199 4.199 27 C -0.008 4.008 28 N -0.258 5.258 29 H 0.080 0.920 30 H 0.122 0.878 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.147 0.853 35 H 0.119 0.881 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.104 0.896 39 H 0.112 0.888 40 H 0.100 0.900 41 H 0.091 0.909 42 H -0.004 1.004 43 H 0.057 0.943 44 H 0.052 0.948 45 H 0.011 0.989 46 H 0.118 0.882 47 H 0.058 0.942 48 H 0.206 0.794 49 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -4.015 -26.915 10.695 29.239 hybrid contribution -0.606 2.331 -0.815 2.543 sum -4.621 -24.584 9.880 26.895 Atomic orbital electron populations 1.21862 0.91443 1.04366 1.03106 1.22854 0.96032 0.79596 1.02766 1.86251 1.16519 1.32747 1.87599 1.19565 0.84697 0.89236 0.93002 1.21029 0.94936 0.96567 1.05882 1.19918 0.93229 0.93430 0.99813 1.18190 0.80144 0.88297 0.77730 1.90786 1.62295 1.44147 1.49152 1.48891 1.13167 1.10786 1.60918 1.23053 0.91059 0.90508 0.99014 1.22473 1.00937 0.90615 1.00769 1.21450 0.95606 0.97683 0.92732 1.22703 0.95660 0.94746 1.01712 1.21833 0.91655 0.93961 0.90019 1.44969 1.46249 1.14462 1.29634 1.19395 1.17558 0.97461 1.02634 0.90917 1.25603 0.99958 0.98200 1.02091 1.70046 1.32947 1.16209 1.40342 0.85088 0.76937 0.78350 0.79015 1.21893 1.21356 1.19415 1.21271 0.94758 0.86710 0.94754 1.22334 0.94325 0.85332 0.97532 1.23075 1.03642 0.91197 1.01968 1.23230 0.88355 0.98541 0.90626 1.67319 1.08038 1.32465 1.17956 0.92024 0.87804 0.91859 0.91295 0.91142 0.85303 0.88066 0.86395 0.86559 0.89566 0.88830 0.89984 0.90934 1.00403 0.94270 0.94798 0.98874 0.88163 0.94182 0.79364 0.76896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 10.28 71.98 0.74 -1.03 16 2 C 0.06 1.01 6.03 71.98 0.43 1.44 16 3 O -0.32 -7.67 10.11 -90.00 -0.91 -8.58 16 4 C 0.31 7.58 7.49 84.80 0.63 8.22 16 5 C -0.16 -4.45 9.62 22.75 0.22 -4.23 16 6 C -0.05 -1.32 5.79 -19.90 -0.12 -1.43 16 7 C 0.57 17.94 7.75 86.88 0.67 18.61 16 8 O -0.58 -24.45 16.95 -3.75 -0.06 -24.51 16 9 N -0.61 -16.01 3.32 -812.91 -2.70 -18.71 16 10 C 0.08 1.25 5.12 86.63 0.44 1.69 16 11 C -0.11 -1.97 6.15 31.08 0.19 -1.78 16 12 C -0.07 -2.22 0.68 -51.87 -0.04 -2.25 16 13 C -0.11 -3.59 5.94 31.56 0.19 -3.40 16 14 C 0.15 7.35 5.84 86.93 0.51 7.86 16 15 N -0.63 -33.20 3.41 -693.05 -2.36 -35.57 16 16 C -0.24 -14.10 10.28 84.04 0.86 -13.24 16 17 H 0.07 4.15 7.83 -2.91 -0.02 4.13 16 18 C -0.07 -3.85 5.49 84.86 0.47 -3.38 16 19 N -0.95 -57.35 10.09 21.65 0.22 -57.13 16 20 Si 0.98 47.12 29.55 68.60 2.03 49.15 16 21 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 22 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 23 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 24 C 0.15 6.31 6.46 86.14 0.56 6.87 16 25 C 0.13 3.95 5.83 86.10 0.50 4.45 16 26 C -0.18 -2.61 8.14 22.62 0.18 -2.43 16 27 C 0.15 1.88 11.17 84.62 0.94 2.83 16 28 N -0.53 -10.32 9.18 -309.15 -2.84 -13.15 16 29 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.07 1.06 8.10 -2.39 -0.02 1.04 16 33 H 0.07 1.06 8.10 -2.38 -0.02 1.04 16 34 H 0.13 3.98 7.91 -2.91 -0.02 3.96 16 35 H 0.10 1.18 5.97 -2.39 -0.01 1.16 16 36 H 0.12 0.82 7.48 -2.39 -0.02 0.80 16 37 H 0.12 1.40 7.89 -2.39 -0.02 1.38 16 38 H 0.09 1.54 7.43 -2.38 -0.02 1.52 16 39 H 0.09 2.51 7.78 -2.39 -0.02 2.49 16 40 H 0.08 2.49 8.08 -2.39 -0.02 2.47 16 41 H 0.07 4.04 5.89 -2.39 -0.01 4.03 16 42 H -0.02 -1.20 8.14 -2.39 -0.02 -1.22 16 43 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 44 H 0.03 1.36 7.45 -2.39 -0.02 1.35 16 45 H -0.01 -0.32 7.80 -2.39 -0.02 -0.33 16 46 H 0.10 2.60 7.83 -2.39 -0.02 2.58 16 47 H 0.04 1.65 7.77 -2.38 -0.02 1.64 16 48 H 0.19 1.40 4.49 -2.91 -0.01 1.38 16 49 H 0.21 0.65 8.06 -2.91 -0.02 0.62 16 Total: -1.00 -83.33 388.74 1.73 -81.61 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: 0.96 Total: 8.10 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: 7.40 Total: 18.79 kcal Atomic # 7 Polarization: -116.88 SS G_CDS: -7.68 Total: -124.56 kcal Atomic # 8 Polarization: -32.11 SS G_CDS: -0.97 Total: -33.09 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Total: -83.33 1.73 -81.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041659408.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.811 kcal (2) G-P(sol) polarization free energy of solvation -83.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds