Wall clock time and date at job start Wed Apr 1 2020 05:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42900 * 109.47681 * 2 1 4 4 C 1.35648 * 117.00502 * 179.97438 * 3 2 1 5 5 C 1.39345 * 120.53872 * 0.22923 * 4 3 2 6 6 C 1.38303 * 118.43672 * 180.28912 * 5 4 3 7 7 C 1.38758 * 119.44542 * 359.72241 * 6 5 4 8 8 N 1.31377 * 121.06741 * 0.03020 * 7 6 5 9 9 C 1.32851 * 121.69824 * 359.97134 * 8 7 6 10 10 C 1.47828 * 119.78480 * 179.97438 * 9 8 7 11 11 O 1.21557 * 120.00081 * 179.97438 * 10 9 8 12 12 N 1.34777 * 119.99983 * 0.02562 * 10 9 8 13 13 C 1.48266 * 127.72406 * 359.96370 * 12 10 9 14 14 C 1.54760 * 104.67382 * 141.29040 * 13 12 10 15 15 C 1.52879 * 104.40643 * 23.63901 * 14 13 12 16 16 C 1.53707 * 111.74756 * 237.42374 * 15 14 13 17 17 C 1.54586 * 102.95098 * 273.44701 * 16 15 14 18 18 N 1.47139 * 107.32940 * 339.04176 * 17 16 15 19 19 C 1.36942 * 125.60313 * 179.08879 * 18 17 16 20 20 H 1.07998 * 119.99192 * 179.97438 * 19 18 17 21 21 C 1.38812 * 119.99950 * 359.97159 * 19 18 17 22 22 N 1.31615 * 120.00294 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 119.99540 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47467 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.46855 * 120.00091 * 23 21 19 26 26 H 1.48496 * 109.47277 * 239.99591 * 23 21 19 27 27 C 1.47708 * 108.78545 * 359.06280 * 18 17 16 28 28 C 1.48491 * 127.71944 * 179.97438 * 12 10 9 29 29 H 1.08995 * 109.47079 * 59.99576 * 1 2 3 30 30 H 1.08995 * 109.47505 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47034 * 299.99617 * 1 2 3 32 32 H 1.09005 * 109.47125 * 239.99873 * 2 1 3 33 33 H 1.09007 * 109.47429 * 120.00494 * 2 1 3 34 34 H 1.07997 * 120.77852 * 0.02562 * 5 4 3 35 35 H 1.08004 * 120.27497 * 179.75353 * 6 5 4 36 36 H 1.08007 * 119.46703 * 179.97438 * 7 6 5 37 37 H 1.09005 * 110.39272 * 22.49972 * 13 12 10 38 38 H 1.08996 * 110.50143 * 260.14186 * 13 12 10 39 39 H 1.08998 * 110.44793 * 264.90340 * 14 13 12 40 40 H 1.09004 * 110.54857 * 142.42302 * 14 13 12 41 41 H 1.09002 * 110.74940 * 155.03206 * 16 15 14 42 42 H 1.08999 * 110.74824 * 31.86685 * 16 15 14 43 43 H 1.08997 * 109.86768 * 98.47246 * 17 16 15 44 44 H 1.08992 * 109.87275 * 219.45909 * 17 16 15 45 45 H 0.97001 * 120.00142 * 179.97438 * 22 21 19 46 46 H 1.09007 * 110.38406 * 141.40179 * 27 18 17 47 47 H 1.08995 * 110.38778 * 263.77636 * 27 18 17 48 48 H 1.08997 * 110.47466 * 99.56513 * 28 12 10 49 49 H 1.08996 * 110.47310 * 336.95014 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3512 1.5249 0.0005 5 6 4.2104 0.4279 -0.0037 6 6 5.5739 0.6592 0.0031 7 6 6.0443 1.9646 0.0082 8 7 5.2154 2.9840 0.0071 9 6 3.8981 2.8124 0.0006 10 6 3.0042 3.9899 0.0002 11 8 1.7983 3.8375 -0.0062 12 7 3.5264 5.2324 0.0059 13 6 4.9591 5.6143 0.0136 14 6 5.0414 6.8465 -0.9191 15 6 3.6278 7.4285 -0.9060 16 6 3.0325 7.5105 -2.3207 17 6 3.5426 8.8770 -2.8326 18 7 3.8977 9.6820 -1.6533 19 6 4.4076 10.9527 -1.6795 20 1 4.6364 11.4618 -0.7550 21 6 4.6302 11.5863 -2.8944 22 7 4.3518 10.9655 -4.0211 23 14 5.3251 13.3198 -2.9301 24 1 5.5511 13.7912 -1.5401 25 1 6.6135 13.3215 -3.6685 26 1 4.3637 14.2245 -3.6100 27 6 3.6131 8.8945 -0.4365 28 6 2.7956 6.5250 0.0059 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.8206 -0.5793 -0.0080 35 1 6.2668 -0.1693 0.0041 36 1 7.1091 2.1457 0.0139 37 1 5.5711 4.8010 -0.3766 38 1 5.2781 5.8789 1.0217 39 1 5.3186 6.5422 -1.9283 40 1 5.7559 7.5727 -0.5314 41 1 1.9432 7.4944 -2.2829 42 1 3.4077 6.6996 -2.9451 43 1 4.4215 8.7326 -3.4609 44 1 2.7582 9.3757 -3.4019 45 1 4.5071 11.4084 -4.8700 46 1 4.3870 9.0605 0.3129 47 1 2.6334 9.1550 -0.0361 48 1 2.7511 6.9377 1.0138 49 1 1.7919 6.3955 -0.3988 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041863508.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:51 Heat of formation + Delta-G solvation = -8.642827 kcal Electronic energy + Delta-G solvation = -30758.157491 eV Core-core repulsion = 26686.247408 eV Total energy + Delta-G solvation = -4071.910083 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.04548 -41.03577 -39.48871 -39.21640 -37.13337 -34.50220 -33.42015 -33.03553 -31.87731 -30.97488 -30.71164 -29.88052 -27.46594 -26.25022 -25.47095 -24.26206 -23.81858 -23.06225 -22.11846 -21.08900 -20.19220 -19.17811 -18.83122 -18.42415 -17.68148 -17.31984 -16.88241 -16.71185 -16.66348 -15.96222 -15.79176 -15.59916 -15.45749 -15.26784 -14.73880 -14.42148 -14.25070 -14.23788 -13.85826 -13.83912 -13.59136 -13.51673 -13.34727 -13.15967 -13.04308 -12.93015 -12.75470 -12.52397 -12.34539 -12.19451 -11.96557 -11.84539 -11.82239 -11.53682 -11.50944 -11.29588 -11.12706 -10.81611 -10.68990 -10.30298 -9.77119 -9.40944 -8.86843 -7.81937 -5.17417 -0.35191 0.23580 1.47360 1.48535 1.58974 1.75474 1.87467 2.10822 2.51762 2.82839 3.11819 3.36145 3.48480 3.57265 3.67847 3.71290 3.78517 3.89283 4.01117 4.02086 4.12248 4.14892 4.32972 4.33137 4.33955 4.41528 4.45100 4.59297 4.67319 4.73033 4.77514 4.86988 4.89419 4.90051 4.94738 4.98486 5.02517 5.08341 5.13745 5.21285 5.22378 5.40497 5.42624 5.48739 5.59520 5.66402 5.77533 6.20741 6.25363 6.53807 6.73793 7.12050 7.14850 7.79372 8.45434 9.29029 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.021412 B = 0.002398 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.372159 B =11675.396737 C =12368.187066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.038 3.962 3 O -0.308 6.308 4 C 0.125 3.875 5 C -0.171 4.171 6 C -0.086 4.086 7 C 0.052 3.948 8 N -0.433 5.433 9 C 0.008 3.992 10 C 0.580 3.420 11 O -0.564 6.564 12 N -0.606 5.606 13 C 0.102 3.898 14 C -0.106 4.106 15 C -0.074 4.074 16 C -0.117 4.117 17 C 0.195 3.805 18 N -0.623 5.623 19 C -0.235 4.235 20 H 0.086 0.914 21 C -0.070 4.070 22 N -0.954 5.954 23 Si 0.979 3.021 24 H -0.263 1.263 25 H -0.292 1.292 26 H -0.296 1.296 27 C 0.149 3.851 28 C 0.128 3.872 29 H 0.051 0.949 30 H 0.108 0.892 31 H 0.054 0.946 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.178 0.822 35 H 0.189 0.811 36 H 0.198 0.802 37 H 0.127 0.873 38 H 0.080 0.920 39 H 0.060 0.940 40 H 0.079 0.921 41 H 0.059 0.941 42 H 0.065 0.935 43 H 0.012 0.988 44 H 0.001 0.999 45 H 0.245 0.755 46 H 0.055 0.945 47 H 0.024 0.976 48 H 0.087 0.913 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.880 -29.486 11.186 31.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.037 4.037 3 O -0.219 6.219 4 C 0.074 3.926 5 C -0.197 4.197 6 C -0.105 4.105 7 C -0.110 4.110 8 N -0.145 5.145 9 C -0.127 4.127 10 C 0.369 3.631 11 O -0.443 6.443 12 N -0.338 5.338 13 C -0.020 4.020 14 C -0.145 4.145 15 C -0.076 4.076 16 C -0.155 4.155 17 C 0.069 3.931 18 N -0.349 5.349 19 C -0.364 4.364 20 H 0.104 0.896 21 C -0.263 4.263 22 N -0.604 5.604 23 Si 0.808 3.192 24 H -0.187 1.187 25 H -0.219 1.219 26 H -0.223 1.223 27 C 0.024 3.976 28 C 0.005 3.995 29 H 0.071 0.929 30 H 0.127 0.873 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.195 0.805 35 H 0.206 0.794 36 H 0.215 0.785 37 H 0.144 0.856 38 H 0.098 0.902 39 H 0.078 0.922 40 H 0.097 0.903 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.030 0.970 44 H 0.019 0.981 45 H 0.054 0.946 46 H 0.073 0.927 47 H 0.042 0.958 48 H 0.105 0.895 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.328 -28.507 11.073 30.671 hybrid contribution -0.324 0.544 -0.688 0.935 sum 2.004 -27.963 10.385 29.896 Atomic orbital electron populations 1.21788 0.92289 1.04087 1.02587 1.23260 0.96820 0.80508 1.03084 1.86402 1.17659 1.31453 1.86415 1.20204 0.84657 0.94114 0.93630 1.22164 0.94360 0.98901 1.04281 1.22732 0.95297 0.99590 0.92892 1.23514 1.01173 0.88156 0.98148 1.67637 1.01221 1.36227 1.09387 1.20296 0.90904 0.90540 1.11003 1.17746 0.86810 0.81875 0.76682 1.90784 1.15422 1.85559 1.52530 1.48916 1.09891 1.04109 1.70853 1.23062 0.81082 0.97748 1.00101 1.22287 0.95024 0.96995 1.00165 1.21580 0.96371 0.94691 0.94946 1.22651 0.99499 0.97405 0.95989 1.20844 0.95875 0.87797 0.88553 1.44815 1.74943 1.13516 1.01638 1.19524 1.33784 0.89982 0.93120 0.89589 1.25671 1.02873 1.02617 0.95128 1.70216 1.55348 1.37996 0.96836 0.84987 0.77010 0.79339 0.77868 1.18718 1.21943 1.22298 1.21611 0.98040 0.88575 0.89409 1.22074 0.95697 0.81830 0.99870 0.92949 0.87305 0.92709 0.90008 0.89737 0.80507 0.79388 0.78479 0.85551 0.90183 0.92158 0.90263 0.92185 0.91621 0.96960 0.98080 0.94576 0.92703 0.95810 0.89459 0.91285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 10.28 71.98 0.74 -1.32 16 2 C 0.04 0.52 5.48 71.98 0.39 0.92 16 3 O -0.31 -7.82 8.20 -68.64 -0.56 -8.39 16 4 C 0.12 2.86 6.71 22.93 0.15 3.02 16 5 C -0.17 -2.13 9.13 22.55 0.21 -1.92 16 6 C -0.09 -0.72 10.10 22.41 0.23 -0.50 16 7 C 0.05 0.68 11.17 84.89 0.95 1.63 16 8 N -0.43 -9.58 6.60 -184.64 -1.22 -10.80 16 9 C 0.01 0.23 6.74 41.93 0.28 0.51 16 10 C 0.58 20.02 7.89 86.78 0.69 20.70 16 11 O -0.56 -22.99 15.42 17.09 0.26 -22.73 16 12 N -0.61 -19.42 3.33 -812.13 -2.70 -22.13 16 13 C 0.10 2.78 6.54 86.64 0.57 3.35 16 14 C -0.11 -3.45 6.28 31.15 0.20 -3.25 16 15 C -0.07 -2.68 0.82 -51.67 -0.04 -2.73 16 16 C -0.12 -4.85 5.83 31.37 0.18 -4.66 16 17 C 0.19 10.18 5.34 86.80 0.46 10.65 16 18 N -0.62 -32.79 3.41 -692.38 -2.36 -35.15 16 19 C -0.24 -13.37 10.28 84.03 0.86 -12.50 16 20 H 0.09 4.63 7.83 -2.91 -0.02 4.60 16 21 C -0.07 -4.10 5.49 84.86 0.47 -3.63 16 22 N -0.95 -59.20 10.31 21.65 0.22 -58.98 16 23 Si 0.98 46.67 29.55 68.60 2.03 48.70 16 24 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 25 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 26 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 27 C 0.15 6.18 6.07 86.46 0.52 6.70 16 28 C 0.13 4.22 6.20 85.99 0.53 4.75 16 29 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 32 H 0.08 0.79 7.69 -2.38 -0.02 0.77 16 33 H 0.08 0.76 7.71 -2.38 -0.02 0.74 16 34 H 0.18 0.94 6.46 -2.91 -0.02 0.92 16 35 H 0.19 -0.11 8.06 -2.91 -0.02 -0.13 16 36 H 0.20 1.16 8.06 -2.91 -0.02 1.13 16 37 H 0.13 3.22 5.17 -2.38 -0.01 3.21 16 38 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.06 2.07 7.51 -2.39 -0.02 2.06 16 40 H 0.08 2.61 7.55 -2.39 -0.02 2.60 16 41 H 0.06 2.42 7.73 -2.39 -0.02 2.41 16 42 H 0.07 2.60 7.71 -2.39 -0.02 2.58 16 43 H 0.01 0.71 7.39 -2.39 -0.02 0.69 16 44 H 0.00 0.06 7.50 -2.39 -0.02 0.04 16 45 H 0.24 14.76 8.31 -92.71 -0.77 13.99 16 46 H 0.05 2.13 7.76 -2.38 -0.02 2.11 16 47 H 0.02 0.99 8.06 -2.39 -0.02 0.97 16 48 H 0.09 2.59 7.95 -2.39 -0.02 2.57 16 49 H 0.07 2.46 7.35 -2.39 -0.02 2.44 16 Total: -1.00 -81.28 386.83 4.01 -77.27 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: 0.95 Total: 10.49 kcal Atomic # 6 Polarization: 14.32 SS G_CDS: 7.39 Total: 21.71 kcal Atomic # 7 Polarization: -121.00 SS G_CDS: -6.06 Total: -127.06 kcal Atomic # 8 Polarization: -30.82 SS G_CDS: -0.30 Total: -31.11 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Total: -81.28 4.01 -77.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041863508.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.631 kcal (2) G-P(sol) polarization free energy of solvation -81.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds