Wall clock time and date at job start Wed Apr 1 2020 05:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42907 * 109.47222 * 2 1 4 4 C 1.35498 * 116.99847 * 179.97438 * 3 2 1 5 5 C 1.39169 * 119.52283 * 179.97438 * 4 3 2 6 6 C 1.37956 * 119.26144 * 180.02562 * 5 4 3 7 7 C 1.40287 * 118.35908 * 0.02562 * 6 5 4 8 8 C 1.47608 * 120.49831 * 179.97438 * 7 6 5 9 9 O 1.21588 * 119.99718 * 219.72007 * 8 7 6 10 10 N 1.34780 * 120.00441 * 39.71723 * 8 7 6 11 11 C 1.47135 * 121.20805 * 185.63493 * 10 8 7 12 12 C 1.52845 * 107.94330 * 237.33209 * 11 10 8 13 13 C 1.53091 * 110.57562 * 302.63148 * 12 11 10 14 14 H 1.08998 * 113.05538 * 289.00908 * 13 12 11 15 15 C 1.56021 * 106.39662 * 164.57736 * 13 12 11 16 16 C 1.54498 * 102.61300 * 281.61350 * 15 13 12 17 17 N 1.47436 * 107.15194 * 337.15738 * 16 15 13 18 18 C 1.36933 * 126.06104 * 178.39320 * 17 16 15 19 19 H 1.07998 * 119.99988 * 174.55634 * 18 17 16 20 20 C 1.38820 * 120.00126 * 354.55766 * 18 17 16 21 21 N 1.31619 * 119.99877 * 354.43907 * 20 18 17 22 22 Si 1.86798 * 119.99860 * 174.43649 * 20 18 17 23 23 H 1.48494 * 109.46897 * 95.00496 * 22 20 18 24 24 H 1.48501 * 109.46973 * 214.99879 * 22 20 18 25 25 H 1.48497 * 109.47215 * 334.99912 * 22 20 18 26 26 C 1.46460 * 107.87598 * 358.37541 * 17 16 15 27 27 H 1.09004 * 108.42366 * 270.75798 * 26 17 16 28 28 C 1.46761 * 121.20990 * 5.61314 * 10 8 7 29 29 C 1.39525 * 119.00121 * 0.24810 * 7 6 5 30 30 N 1.31667 * 120.62676 * 359.47900 * 29 7 6 31 31 H 1.08997 * 109.47058 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46885 * 300.00521 * 1 2 3 33 33 H 1.08998 * 109.46862 * 60.00117 * 1 2 3 34 34 H 1.08994 * 109.47501 * 239.99620 * 2 1 3 35 35 H 1.09003 * 109.46723 * 119.99428 * 2 1 3 36 36 H 1.07997 * 120.36985 * 0.05358 * 5 4 3 37 37 H 1.08002 * 120.82281 * 180.02562 * 6 5 4 38 38 H 1.09001 * 109.79637 * 117.72100 * 11 10 8 39 39 H 1.08997 * 109.76389 * 356.93579 * 11 10 8 40 40 H 1.08993 * 109.25637 * 182.34107 * 12 11 10 41 41 H 1.09008 * 109.24862 * 62.90989 * 12 11 10 42 42 H 1.09006 * 110.78010 * 163.33429 * 15 13 12 43 43 H 1.08995 * 110.94727 * 39.97287 * 15 13 12 44 44 H 1.09002 * 109.90097 * 217.77755 * 16 15 13 45 45 H 1.09003 * 109.90269 * 96.54481 * 16 15 13 46 46 H 0.96997 * 119.99823 * 179.97438 * 21 20 18 47 47 H 1.08999 * 109.22932 * 7.13281 * 28 10 8 48 48 H 1.09002 * 109.22566 * 247.72674 * 28 10 8 49 49 H 1.08003 * 119.68430 * 179.72396 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3497 1.5248 0.0005 5 6 3.8710 2.8152 0.0000 6 6 5.2394 2.9896 0.0000 7 6 6.0566 1.8493 0.0000 8 6 7.5267 1.9812 -0.0005 9 8 8.2043 1.2286 -0.6735 10 7 8.1181 2.9358 0.7449 11 6 9.5686 3.1714 0.6709 12 6 10.1443 3.0088 2.0774 13 6 9.4603 3.9698 3.0532 14 1 9.7370 5.0115 2.8910 15 6 9.8116 3.4654 4.4872 16 6 8.8436 2.2757 4.6730 17 7 7.7147 2.4851 3.7481 18 6 6.6486 1.6436 3.5738 19 1 5.8299 1.9350 2.9326 20 6 6.6202 0.4160 4.2214 21 7 7.6642 0.0132 4.9144 22 14 5.1003 -0.6641 4.1092 23 1 5.2720 -1.6475 3.0098 24 1 4.9099 -1.3855 5.3932 25 1 3.9109 0.1818 3.8355 26 6 7.9355 3.7530 3.0490 27 1 7.4827 4.5529 3.6350 28 6 7.3385 3.7783 1.6594 29 6 5.4586 0.5887 -0.0053 30 7 4.1475 0.4681 0.0001 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 3.2115 3.6705 0.0001 37 1 5.6711 3.9796 0.0001 38 1 9.7605 4.1814 0.3088 39 1 10.0262 2.4452 -0.0008 40 1 11.2134 3.2199 2.0548 41 1 9.9880 1.9836 2.4134 42 1 9.6178 4.2410 5.2283 43 1 10.8481 3.1326 4.5402 44 1 8.4813 2.2491 5.7007 45 1 9.3524 1.3422 4.4322 46 1 7.6442 -0.8443 5.3671 47 1 6.3139 3.4092 1.7021 48 1 7.3356 4.8033 1.2886 49 1 6.0772 -0.2967 -0.0099 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042082219.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:28 Heat of formation + Delta-G solvation = -19.341988 kcal Electronic energy + Delta-G solvation = -32479.288672 eV Core-core repulsion = 28406.914639 eV Total energy + Delta-G solvation = -4072.374033 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.09467 -41.11033 -39.74216 -38.76586 -36.44986 -34.95148 -33.82569 -33.21321 -32.66218 -31.26170 -30.50501 -30.03155 -26.66511 -25.94153 -25.40986 -24.85388 -23.59372 -23.27604 -21.74934 -21.48027 -19.95087 -19.64190 -18.74580 -18.29611 -17.70362 -17.43593 -17.18716 -16.73179 -16.23170 -16.03520 -15.70738 -15.61513 -15.44980 -15.07648 -14.99189 -14.80234 -14.34465 -14.18165 -14.06845 -13.77519 -13.65567 -13.37727 -13.34057 -13.18024 -13.08331 -12.94115 -12.68410 -12.59785 -12.55377 -12.32776 -12.09404 -11.80539 -11.70052 -11.52507 -11.28652 -11.18060 -11.05257 -10.85342 -10.70398 -10.60393 -9.70801 -9.44429 -8.78763 -7.83336 -5.14713 -0.23586 0.11745 1.29553 1.35486 1.37449 1.65501 1.90489 2.13535 2.42598 2.71519 3.13060 3.34847 3.48432 3.55704 3.77489 3.89834 3.92212 3.98575 4.00494 4.05641 4.11388 4.14754 4.30885 4.38944 4.44975 4.51849 4.60668 4.61671 4.66350 4.71524 4.74783 4.80460 4.88826 4.89945 4.92099 4.95880 5.04827 5.14761 5.18106 5.20821 5.28412 5.31000 5.48311 5.64975 5.67727 5.73882 5.86772 6.08327 6.24003 6.43274 6.66481 7.12019 7.15026 7.83243 8.48629 9.25996 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011555 B = 0.004850 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.661448 B = 5771.772429 C = 7156.105638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.057 3.943 3 O -0.306 6.306 4 C 0.320 3.680 5 C -0.184 4.184 6 C -0.001 4.001 7 C -0.214 4.214 8 C 0.574 3.426 9 O -0.590 6.590 10 N -0.585 5.585 11 C 0.116 3.884 12 C -0.117 4.117 13 C -0.084 4.084 14 H 0.129 0.871 15 C -0.130 4.130 16 C 0.179 3.821 17 N -0.605 5.605 18 C -0.190 4.190 19 H 0.076 0.924 20 C -0.061 4.061 21 N -0.947 5.947 22 Si 0.936 3.064 23 H -0.298 1.298 24 H -0.297 1.297 25 H -0.275 1.275 26 C 0.138 3.862 27 H 0.045 0.955 28 C 0.098 3.902 29 C 0.180 3.820 30 N -0.562 5.562 31 H 0.097 0.903 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.046 0.954 36 H 0.184 0.816 37 H 0.185 0.815 38 H 0.111 0.889 39 H 0.068 0.932 40 H 0.092 0.908 41 H 0.024 0.976 42 H 0.072 0.928 43 H 0.072 0.928 44 H -0.011 1.011 45 H 0.014 0.986 46 H 0.239 0.761 47 H 0.080 0.920 48 H 0.118 0.882 49 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.155 13.203 -10.077 17.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.018 4.018 3 O -0.213 6.213 4 C 0.140 3.860 5 C -0.204 4.204 6 C -0.026 4.026 7 C -0.220 4.220 8 C 0.363 3.637 9 O -0.472 6.472 10 N -0.315 5.315 11 C -0.006 4.006 12 C -0.155 4.155 13 C -0.103 4.103 14 H 0.147 0.853 15 C -0.168 4.168 16 C 0.054 3.946 17 N -0.330 5.330 18 C -0.320 4.320 19 H 0.094 0.906 20 C -0.254 4.254 21 N -0.598 5.598 22 Si 0.768 3.232 23 H -0.226 1.226 24 H -0.224 1.224 25 H -0.200 1.200 26 C 0.031 3.969 27 H 0.062 0.938 28 C -0.025 4.025 29 C 0.023 3.977 30 N -0.286 5.286 31 H 0.115 0.885 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.064 0.936 36 H 0.201 0.799 37 H 0.202 0.798 38 H 0.129 0.871 39 H 0.086 0.914 40 H 0.110 0.890 41 H 0.043 0.957 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.007 0.993 45 H 0.033 0.967 46 H 0.049 0.951 47 H 0.098 0.902 48 H 0.136 0.864 49 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -5.515 11.994 -10.330 16.762 hybrid contribution -0.241 -1.546 0.739 1.731 sum -5.756 10.448 -9.591 15.306 Atomic orbital electron populations 1.21818 0.90108 1.04323 1.03770 1.22827 0.96925 0.80273 1.01810 1.86178 1.16250 1.31732 1.87166 1.20448 0.84384 0.90785 0.90337 1.21343 0.95810 0.95797 1.07450 1.21956 0.91941 0.99092 0.89642 1.20636 0.94366 0.95878 1.11112 1.18055 0.87158 0.79443 0.79004 1.90704 1.66101 1.44094 1.46302 1.47824 1.09226 1.34638 1.39782 1.21708 0.78759 1.02856 0.97256 1.21759 1.00391 0.98926 0.94468 1.22466 0.94072 0.99928 0.93839 0.85339 1.23004 0.98777 0.97550 0.97503 1.21018 0.87557 0.95036 0.90998 1.44498 1.22830 1.21255 1.44368 1.18976 0.95767 0.95451 1.21787 0.90627 1.25213 0.98988 0.98982 1.02189 1.70121 1.29413 1.20893 1.39346 0.85658 0.81338 0.80021 0.76212 1.22563 1.22351 1.20033 1.21118 0.95301 0.88520 0.91957 0.93767 1.22046 0.95946 0.95546 0.88960 1.22242 0.88854 0.96775 0.89810 1.67271 1.06187 1.34196 1.20931 0.88451 0.91575 0.90511 0.91533 0.93563 0.79874 0.79791 0.87083 0.91381 0.88999 0.95655 0.90914 0.90950 0.99275 0.96742 0.95095 0.90152 0.86410 0.84041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 10.28 71.98 0.74 -1.76 16 2 C 0.06 1.46 6.02 71.98 0.43 1.90 16 3 O -0.31 -8.87 10.10 -87.99 -0.89 -9.76 16 4 C 0.32 10.22 7.49 84.83 0.64 10.86 16 5 C -0.18 -4.66 10.02 22.43 0.22 -4.44 16 6 C 0.00 -0.03 7.52 22.70 0.17 0.14 16 7 C -0.21 -7.53 5.16 -20.00 -0.10 -7.64 16 8 C 0.57 21.97 7.36 86.72 0.64 22.61 16 9 O -0.59 -26.61 16.41 -3.99 -0.07 -26.67 16 10 N -0.58 -18.68 2.97 -826.78 -2.45 -21.14 16 11 C 0.12 3.19 6.44 86.21 0.56 3.75 16 12 C -0.12 -3.47 5.04 30.57 0.15 -3.32 16 13 C -0.08 -2.28 3.68 -9.38 -0.03 -2.31 16 14 H 0.13 2.35 8.14 -2.39 -0.02 2.33 16 15 C -0.13 -4.26 6.32 32.15 0.20 -4.06 16 16 C 0.18 8.50 4.68 86.71 0.41 8.90 16 17 N -0.60 -28.20 3.20 -674.09 -2.15 -30.36 16 18 C -0.19 -10.07 9.64 84.04 0.81 -9.26 16 19 H 0.08 3.90 6.60 -2.91 -0.02 3.88 16 20 C -0.06 -3.53 5.46 84.86 0.46 -3.07 16 21 N -0.95 -58.40 10.48 21.65 0.23 -58.18 16 22 Si 0.94 48.71 29.56 68.60 2.03 50.74 16 23 H -0.30 -15.89 7.11 99.48 0.71 -15.19 16 24 H -0.30 -15.53 7.11 99.48 0.71 -14.83 16 25 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16 26 C 0.14 4.56 2.97 44.77 0.13 4.69 16 27 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 28 C 0.10 2.71 4.18 85.76 0.36 3.07 16 29 C 0.18 7.08 10.80 85.03 0.92 8.00 16 30 N -0.56 -21.00 9.18 -307.81 -2.82 -23.83 16 31 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.07 1.69 8.10 -2.39 -0.02 1.67 16 35 H 0.05 1.38 8.10 -2.39 -0.02 1.36 16 36 H 0.18 3.18 8.06 -2.91 -0.02 3.15 16 37 H 0.18 3.27 6.60 -2.91 -0.02 3.25 16 38 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.07 2.16 7.06 -2.39 -0.02 2.15 16 40 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.02 1.04 6.85 -2.38 -0.02 1.02 16 42 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 43 H 0.07 2.20 7.98 -2.39 -0.02 2.18 16 44 H -0.01 -0.60 7.97 -2.39 -0.02 -0.61 16 45 H 0.01 0.81 6.61 -2.39 -0.02 0.79 16 46 H 0.24 14.71 8.31 -92.71 -0.77 13.94 16 47 H 0.08 2.48 3.31 -2.39 -0.01 2.47 16 48 H 0.12 2.03 8.10 -2.39 -0.02 2.01 16 49 H 0.14 6.00 8.06 -2.91 -0.02 5.98 16 Total: -1.00 -78.90 383.12 1.53 -77.37 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: 0.96 Total: 13.76 kcal Atomic # 6 Polarization: 21.35 SS G_CDS: 6.71 Total: 28.06 kcal Atomic # 7 Polarization: -126.29 SS G_CDS: -7.21 Total: -133.49 kcal Atomic # 8 Polarization: -35.48 SS G_CDS: -0.95 Total: -36.43 kcal Atomic # 14 Polarization: 48.71 SS G_CDS: 2.03 Total: 50.74 kcal Total: -78.90 1.53 -77.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042082219.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.029 kcal (2) G-P(sol) polarization free energy of solvation -78.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds