Wall clock time and date at job start Wed Apr 1 2020 05:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42898 * 109.47287 * 2 1 4 4 C 1.35493 * 117.00200 * 179.97438 * 3 2 1 5 5 C 1.39171 * 119.52977 * 180.02562 * 4 3 2 6 6 C 1.37954 * 119.26572 * 180.02562 * 5 4 3 7 7 C 1.40285 * 118.35456 * 0.02562 * 6 5 4 8 8 C 1.47616 * 120.49460 * 179.97438 * 7 6 5 9 9 O 1.21581 * 119.99829 * 327.57367 * 8 7 6 10 10 N 1.34768 * 120.00134 * 147.57820 * 8 7 6 11 11 C 1.47153 * 121.21482 * 174.45459 * 10 8 7 12 12 C 1.52849 * 107.97929 * 122.69438 * 11 10 8 13 13 C 1.53091 * 110.54031 * 57.36925 * 12 11 10 14 14 H 1.09002 * 112.49457 * 70.52392 * 13 12 11 15 15 C 1.56114 * 106.34846 * 195.42535 * 13 12 11 16 16 C 1.54504 * 102.62516 * 78.37253 * 15 13 12 17 17 N 1.47434 * 107.14490 * 22.83402 * 16 15 13 18 18 C 1.36948 * 126.05626 * 181.65358 * 17 16 15 19 19 H 1.07998 * 119.99814 * 186.86896 * 18 17 16 20 20 C 1.38813 * 119.99776 * 6.86126 * 18 17 16 21 21 N 1.31616 * 120.00160 * 8.01768 * 20 18 17 22 22 Si 1.86799 * 119.99607 * 188.01675 * 20 18 17 23 23 H 1.48506 * 109.46820 * 85.00491 * 22 20 18 24 24 H 1.48494 * 109.47309 * 205.00049 * 22 20 18 25 25 H 1.48500 * 109.47270 * 325.00644 * 22 20 18 26 26 C 1.46459 * 107.88415 * 1.62904 * 17 16 15 27 27 H 1.08996 * 108.42439 * 89.23724 * 26 17 16 28 28 C 1.46755 * 121.21213 * 354.42717 * 10 8 7 29 29 C 1.39511 * 119.00712 * 0.24866 * 7 6 5 30 30 N 1.31673 * 120.62595 * 359.47409 * 29 7 6 31 31 H 1.08997 * 109.47344 * 59.99059 * 1 2 3 32 32 H 1.09000 * 109.47581 * 180.02562 * 1 2 3 33 33 H 1.09012 * 109.46866 * 299.99628 * 1 2 3 34 34 H 1.08999 * 109.46560 * 240.00600 * 2 1 3 35 35 H 1.08998 * 109.47357 * 120.00384 * 2 1 3 36 36 H 1.08005 * 120.36302 * 0.02562 * 5 4 3 37 37 H 1.07997 * 120.81828 * 180.02562 * 6 5 4 38 38 H 1.08995 * 109.76329 * 3.07467 * 11 10 8 39 39 H 1.09000 * 109.76352 * 242.30825 * 11 10 8 40 40 H 1.08996 * 109.25777 * 177.63290 * 12 11 10 41 41 H 1.08998 * 109.25344 * 297.10836 * 12 11 10 42 42 H 1.08997 * 110.78162 * 320.08060 * 15 13 12 43 43 H 1.09000 * 110.92935 * 196.72625 * 15 13 12 44 44 H 1.09004 * 109.89546 * 263.45790 * 16 15 13 45 45 H 1.08996 * 110.05247 * 142.29621 * 16 15 13 46 46 H 0.97002 * 120.00005 * 180.02562 * 21 20 18 47 47 H 1.08995 * 109.22916 * 352.86226 * 28 10 8 48 48 H 1.09001 * 109.22441 * 112.22360 * 28 10 8 49 49 H 1.07999 * 119.68771 * 179.72955 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3496 1.5248 0.0005 5 6 3.8709 2.8151 0.0011 6 6 5.2394 2.9896 0.0011 7 6 6.0564 1.8492 0.0000 8 6 7.5267 1.9811 -0.0006 9 8 8.0525 2.9210 -0.5649 10 7 8.2862 1.0596 0.6242 11 6 9.7548 1.0970 0.5391 12 6 10.3078 1.1776 1.9618 13 6 9.8158 -0.0071 2.7973 14 1 10.2710 -0.9496 2.4931 15 6 10.0877 0.3642 4.2891 16 6 8.9261 1.3297 4.6139 17 7 7.8424 1.0436 3.6562 18 6 6.6423 1.6987 3.5776 19 1 5.8727 1.3378 2.9114 20 6 6.4151 2.8265 4.3544 21 7 7.4005 3.3589 5.0457 22 14 4.7108 3.5885 4.4184 23 1 3.8953 2.8916 5.4454 24 1 4.8246 5.0269 4.7693 25 1 4.0577 3.4527 3.0917 26 6 8.2769 -0.0649 2.8033 27 1 7.9796 -1.0007 3.2765 28 6 7.6787 -0.0173 1.4147 29 6 5.4586 0.5887 -0.0064 30 7 4.1474 0.4681 -0.0009 31 1 -0.3634 0.5140 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.8932 -0.5138 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 3.2114 3.6704 0.0015 37 1 5.6710 3.9796 0.0020 38 1 10.0689 1.9729 -0.0284 39 1 10.1190 0.1920 0.0530 40 1 11.3971 1.1640 1.9253 41 1 9.9753 2.1067 2.4246 42 1 11.0492 0.8669 4.3934 43 1 10.0446 -0.5204 4.9245 44 1 9.2587 2.3616 4.5006 45 1 8.5751 1.1628 5.6322 46 1 7.2416 4.1468 5.5888 47 1 6.6054 0.1556 1.4919 48 1 7.8530 -0.9708 0.9160 49 1 6.0771 -0.2966 -0.0117 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042082220.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:36 Heat of formation + Delta-G solvation = 8.501375 kcal Electronic energy + Delta-G solvation = -32498.303337 eV Core-core repulsion = 28427.136682 eV Total energy + Delta-G solvation = -4071.166654 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.83479 -39.76138 -38.31061 -37.47551 -34.91012 -33.20642 -32.36776 -32.12400 -31.37569 -30.01062 -29.00468 -28.33939 -25.04522 -24.52212 -24.16841 -23.28946 -22.58254 -21.94424 -20.10008 -19.98204 -18.63249 -18.34306 -17.35711 -16.93703 -16.29226 -16.12950 -15.63392 -15.10682 -14.71153 -14.54628 -14.34010 -14.06921 -13.92504 -13.87538 -13.80015 -13.24578 -13.14067 -12.78644 -12.62681 -12.59458 -12.36854 -12.21706 -11.95656 -11.62220 -11.57409 -11.49913 -11.28352 -10.90120 -10.84329 -10.76037 -10.71885 -10.22233 -10.07172 -9.85163 -9.77635 -9.69946 -9.62147 -9.52959 -9.27124 -8.63281 -8.34988 -8.11172 -6.82046 -5.70500 -3.06813 1.03175 1.39765 3.02345 3.12036 3.37563 3.42583 3.44629 3.44864 4.05277 4.30877 4.47557 4.81189 4.92234 4.94396 4.96449 5.05460 5.18022 5.19410 5.28019 5.34010 5.36881 5.49467 5.53632 5.60227 5.69115 5.71702 5.72997 5.75731 5.79121 5.86563 5.92207 5.97474 6.03122 6.14865 6.21131 6.27384 6.28901 6.36089 6.48666 6.56667 6.64238 6.66794 6.98091 7.03881 7.28247 7.44872 7.62628 7.81380 7.83190 7.87466 8.25109 8.58187 9.17759 9.81201 10.47852 11.38158 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010687 B = 0.004846 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2619.323320 B = 5776.423859 C = 6886.508413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.065 3.935 3 O -0.306 6.306 4 C 0.336 3.664 5 C -0.193 4.193 6 C 0.020 3.980 7 C -0.200 4.200 8 C 0.583 3.417 9 O -0.550 6.550 10 N -0.586 5.586 11 C 0.118 3.882 12 C -0.123 4.123 13 C -0.102 4.102 14 H 0.075 0.925 15 C -0.141 4.141 16 C 0.170 3.830 17 N -0.586 5.586 18 C -0.219 4.219 19 H 0.071 0.929 20 C -0.001 4.001 21 N -0.914 5.914 22 Si 0.894 3.106 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.276 1.276 26 C 0.153 3.847 27 H 0.028 0.972 28 C 0.092 3.908 29 C 0.167 3.833 30 N -0.544 5.544 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.144 0.856 37 H 0.148 0.852 38 H 0.087 0.913 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.083 0.917 42 H 0.059 0.941 43 H 0.052 0.948 44 H 0.064 0.936 45 H 0.026 0.974 46 H 0.251 0.749 47 H 0.097 0.903 48 H 0.062 0.938 49 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.065 -8.688 -9.806 13.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 O -0.213 6.213 4 C 0.158 3.842 5 C -0.214 4.214 6 C -0.005 4.005 7 C -0.206 4.206 8 C 0.372 3.628 9 O -0.430 6.430 10 N -0.318 5.318 11 C -0.005 4.005 12 C -0.161 4.161 13 C -0.121 4.121 14 H 0.094 0.906 15 C -0.179 4.179 16 C 0.045 3.955 17 N -0.311 5.311 18 C -0.347 4.347 19 H 0.089 0.911 20 C -0.198 4.198 21 N -0.561 5.561 22 Si 0.724 3.276 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.202 1.202 26 C 0.044 3.956 27 H 0.045 0.955 28 C -0.032 4.032 29 C 0.010 3.990 30 N -0.268 5.268 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.161 0.839 37 H 0.166 0.834 38 H 0.105 0.895 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.101 0.899 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.082 0.918 45 H 0.044 0.956 46 H 0.062 0.938 47 H 0.115 0.885 48 H 0.080 0.920 49 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -3.523 -8.618 -9.990 13.656 hybrid contribution -0.518 1.003 0.510 1.239 sum -4.041 -7.615 -9.480 12.814 Atomic orbital electron populations 1.21820 0.93201 1.02762 1.03243 1.22613 0.94581 0.81160 1.02705 1.86183 1.17055 1.30710 1.87388 1.19915 0.83807 0.90045 0.90457 1.20950 0.95569 0.95760 1.09108 1.21393 0.91517 0.99231 0.88393 1.20631 0.94791 0.95060 1.10085 1.17720 0.85743 0.81319 0.78008 1.90721 1.74159 1.31235 1.46857 1.47648 1.06562 1.28768 1.48800 1.21523 0.79176 1.02014 0.97743 1.21840 0.98967 1.00564 0.94741 1.22416 0.96665 0.97082 0.95982 0.90625 1.23119 0.99908 0.99889 0.95007 1.21319 0.85221 0.96774 0.92155 1.44265 1.15621 1.36968 1.34293 1.18742 0.89066 1.05709 1.21164 0.91139 1.24695 0.97225 0.97453 1.00396 1.69919 1.29317 1.23250 1.33656 0.86390 0.84396 0.78603 0.78166 1.21695 1.21678 1.20175 1.20729 0.91974 0.93049 0.89824 0.95470 1.22079 1.00061 0.88550 0.92459 1.22843 0.89183 0.96501 0.90470 1.67301 1.06170 1.32709 1.20570 0.91789 0.90375 0.91622 0.91592 0.91338 0.83851 0.83385 0.89494 0.91968 0.92091 0.89873 0.92217 0.92877 0.91765 0.95588 0.93836 0.88503 0.92040 0.81470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 10.28 37.16 0.38 -0.98 16 2 C 0.06 0.77 6.02 37.16 0.22 0.99 16 3 O -0.31 -4.61 10.10 -18.17 -0.18 -4.79 16 4 C 0.34 5.57 7.49 -16.96 -0.13 5.44 16 5 C -0.19 -3.18 10.02 -39.34 -0.39 -3.57 16 6 C 0.02 0.36 9.73 -38.92 -0.38 -0.02 16 7 C -0.20 -3.62 5.40 -104.83 -0.57 -4.18 16 8 C 0.58 11.37 7.44 -12.44 -0.09 11.28 16 9 O -0.55 -12.06 16.30 5.29 0.09 -11.98 16 10 N -0.59 -10.28 2.97 -175.29 -0.52 -10.80 16 11 C 0.12 1.84 6.44 -3.76 -0.02 1.81 16 12 C -0.12 -2.01 5.04 -26.76 -0.13 -2.14 16 13 C -0.10 -1.64 3.68 -88.38 -0.33 -1.96 16 14 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 15 C -0.14 -2.49 6.33 -24.27 -0.15 -2.64 16 16 C 0.17 3.94 4.73 -2.74 -0.01 3.92 16 17 N -0.59 -13.80 3.20 -164.42 -0.53 -14.32 16 18 C -0.22 -5.71 9.62 -15.05 -0.14 -5.86 16 19 H 0.07 1.83 6.64 -52.49 -0.35 1.48 16 20 C 0.00 -0.02 5.45 -17.43 -0.09 -0.12 16 21 N -0.91 -26.44 10.55 55.49 0.59 -25.86 16 22 Si 0.89 22.15 29.56 -169.99 -5.02 17.13 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 26 C 0.15 2.85 2.97 -68.30 -0.20 2.64 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 28 C 0.09 1.52 4.02 -4.77 -0.02 1.50 16 29 C 0.17 2.69 8.58 -17.15 -0.15 2.54 16 30 N -0.54 -8.89 9.18 -12.97 -0.12 -9.01 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.61 8.14 -51.92 -0.42 0.18 16 34 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 35 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 36 H 0.14 2.04 8.06 -52.48 -0.42 1.61 16 37 H 0.15 2.55 8.02 -52.49 -0.42 2.13 16 38 H 0.09 1.44 7.06 -51.93 -0.37 1.08 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.08 1.73 6.85 -51.93 -0.36 1.38 16 42 H 0.06 0.98 7.97 -51.93 -0.41 0.56 16 43 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.06 1.70 6.48 -51.93 -0.34 1.36 16 45 H 0.03 0.67 8.06 -51.93 -0.42 0.25 16 46 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 47 H 0.10 1.73 2.91 -51.93 -0.15 1.58 16 48 H 0.06 0.80 8.01 -51.93 -0.42 0.38 16 49 H 0.17 2.30 5.74 -52.49 -0.30 1.99 16 LS Contribution 381.86 15.07 5.75 5.75 Total: -1.00 -32.00 381.86 -9.47 -41.47 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -7.31 Total: 3.74 kcal Atomic # 6 Polarization: 10.87 SS G_CDS: -2.21 Total: 8.65 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: -0.58 Total: -59.98 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.10 Total: -16.77 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.00 -9.47 -41.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042082220.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.972 kcal (2) G-P(sol) polarization free energy of solvation -32.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds