Wall clock time and date at job start Wed Apr 1 2020 05:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42898 * 109.47287 * 2 1 4 4 C 1.35493 * 117.00200 * 179.97438 * 3 2 1 5 5 C 1.39171 * 119.52977 * 180.02562 * 4 3 2 6 6 C 1.37954 * 119.26572 * 180.02562 * 5 4 3 7 7 C 1.40285 * 118.35456 * 0.02562 * 6 5 4 8 8 C 1.47616 * 120.49460 * 179.97438 * 7 6 5 9 9 O 1.21581 * 119.99829 * 327.57367 * 8 7 6 10 10 N 1.34768 * 120.00134 * 147.57820 * 8 7 6 11 11 C 1.47153 * 121.21482 * 174.45459 * 10 8 7 12 12 C 1.52849 * 107.97929 * 122.69438 * 11 10 8 13 13 C 1.53091 * 110.54031 * 57.36925 * 12 11 10 14 14 H 1.09002 * 112.49457 * 70.52392 * 13 12 11 15 15 C 1.56114 * 106.34846 * 195.42535 * 13 12 11 16 16 C 1.54504 * 102.62516 * 78.37253 * 15 13 12 17 17 N 1.47434 * 107.14490 * 22.83402 * 16 15 13 18 18 C 1.36948 * 126.05626 * 181.65358 * 17 16 15 19 19 H 1.07998 * 119.99814 * 186.86896 * 18 17 16 20 20 C 1.38813 * 119.99776 * 6.86126 * 18 17 16 21 21 N 1.31616 * 120.00160 * 8.01768 * 20 18 17 22 22 Si 1.86799 * 119.99607 * 188.01675 * 20 18 17 23 23 H 1.48506 * 109.46820 * 85.00491 * 22 20 18 24 24 H 1.48494 * 109.47309 * 205.00049 * 22 20 18 25 25 H 1.48500 * 109.47270 * 325.00644 * 22 20 18 26 26 C 1.46459 * 107.88415 * 1.62904 * 17 16 15 27 27 H 1.08996 * 108.42439 * 89.23724 * 26 17 16 28 28 C 1.46755 * 121.21213 * 354.42717 * 10 8 7 29 29 C 1.39511 * 119.00712 * 0.24866 * 7 6 5 30 30 N 1.31673 * 120.62595 * 359.47409 * 29 7 6 31 31 H 1.08997 * 109.47344 * 59.99059 * 1 2 3 32 32 H 1.09000 * 109.47581 * 180.02562 * 1 2 3 33 33 H 1.09012 * 109.46866 * 299.99628 * 1 2 3 34 34 H 1.08999 * 109.46560 * 240.00600 * 2 1 3 35 35 H 1.08998 * 109.47357 * 120.00384 * 2 1 3 36 36 H 1.08005 * 120.36302 * 0.02562 * 5 4 3 37 37 H 1.07997 * 120.81828 * 180.02562 * 6 5 4 38 38 H 1.08995 * 109.76329 * 3.07467 * 11 10 8 39 39 H 1.09000 * 109.76352 * 242.30825 * 11 10 8 40 40 H 1.08996 * 109.25777 * 177.63290 * 12 11 10 41 41 H 1.08998 * 109.25344 * 297.10836 * 12 11 10 42 42 H 1.08997 * 110.78162 * 320.08060 * 15 13 12 43 43 H 1.09000 * 110.92935 * 196.72625 * 15 13 12 44 44 H 1.09004 * 109.89546 * 263.45790 * 16 15 13 45 45 H 1.08996 * 110.05247 * 142.29621 * 16 15 13 46 46 H 0.97002 * 120.00005 * 180.02562 * 21 20 18 47 47 H 1.08995 * 109.22916 * 352.86226 * 28 10 8 48 48 H 1.09001 * 109.22441 * 112.22360 * 28 10 8 49 49 H 1.07999 * 119.68771 * 179.72955 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3496 1.5248 0.0005 5 6 3.8709 2.8151 0.0011 6 6 5.2394 2.9896 0.0011 7 6 6.0564 1.8492 0.0000 8 6 7.5267 1.9811 -0.0006 9 8 8.0525 2.9210 -0.5649 10 7 8.2862 1.0596 0.6242 11 6 9.7548 1.0970 0.5391 12 6 10.3078 1.1776 1.9618 13 6 9.8158 -0.0071 2.7973 14 1 10.2710 -0.9496 2.4931 15 6 10.0877 0.3642 4.2891 16 6 8.9261 1.3297 4.6139 17 7 7.8424 1.0436 3.6562 18 6 6.6423 1.6987 3.5776 19 1 5.8727 1.3378 2.9114 20 6 6.4151 2.8265 4.3544 21 7 7.4005 3.3589 5.0457 22 14 4.7108 3.5885 4.4184 23 1 3.8953 2.8916 5.4454 24 1 4.8246 5.0269 4.7693 25 1 4.0577 3.4527 3.0917 26 6 8.2769 -0.0649 2.8033 27 1 7.9796 -1.0007 3.2765 28 6 7.6787 -0.0173 1.4147 29 6 5.4586 0.5887 -0.0064 30 7 4.1474 0.4681 -0.0009 31 1 -0.3634 0.5140 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.8932 -0.5138 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 3.2114 3.6704 0.0015 37 1 5.6710 3.9796 0.0020 38 1 10.0689 1.9729 -0.0284 39 1 10.1190 0.1920 0.0530 40 1 11.3971 1.1640 1.9253 41 1 9.9753 2.1067 2.4246 42 1 11.0492 0.8669 4.3934 43 1 10.0446 -0.5204 4.9245 44 1 9.2587 2.3616 4.5006 45 1 8.5751 1.1628 5.6322 46 1 7.2416 4.1468 5.5888 47 1 6.6054 0.1556 1.4919 48 1 7.8530 -0.9708 0.9160 49 1 6.0771 -0.2966 -0.0117 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042082220.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:34 Heat of formation + Delta-G solvation = -12.897846 kcal Electronic energy + Delta-G solvation = -32499.231276 eV Core-core repulsion = 28427.136682 eV Total energy + Delta-G solvation = -4072.094594 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.14919 -41.10008 -39.73638 -38.78093 -36.46538 -34.87336 -33.66060 -33.40725 -32.73512 -31.33265 -30.55013 -29.91238 -26.65041 -26.03681 -25.48748 -24.64368 -23.80733 -23.11315 -21.75850 -21.48006 -19.98153 -19.60342 -18.76586 -18.56905 -17.65034 -17.38999 -17.02679 -16.74822 -16.29536 -15.95515 -15.88580 -15.51467 -15.39198 -15.04924 -14.99056 -14.69699 -14.43136 -14.25009 -13.99446 -13.73823 -13.67278 -13.37069 -13.32189 -13.12383 -13.04747 -12.92900 -12.68855 -12.53469 -12.51348 -12.31258 -12.06743 -11.75189 -11.72621 -11.52063 -11.32273 -11.08925 -11.03790 -10.96258 -10.68940 -10.65405 -9.68161 -9.43292 -8.77770 -7.79588 -5.13991 -0.28525 0.08696 1.35979 1.37881 1.43822 1.68716 1.89789 2.12116 2.46577 2.72553 3.10584 3.36581 3.47387 3.54692 3.73521 3.89477 3.92922 3.94488 4.03888 4.08863 4.10811 4.19061 4.30367 4.41183 4.45885 4.49360 4.51619 4.60959 4.63073 4.69822 4.73869 4.83339 4.87360 4.90994 4.94837 4.97459 5.04002 5.17327 5.18095 5.22153 5.26489 5.30406 5.48309 5.63938 5.65984 5.73221 5.87583 6.10861 6.25970 6.43395 6.59256 7.12856 7.14821 7.84347 8.50021 9.27864 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010687 B = 0.004846 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2619.323320 B = 5776.423859 C = 6886.508413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.057 3.943 3 O -0.312 6.312 4 C 0.331 3.669 5 C -0.201 4.201 6 C 0.003 3.997 7 C -0.221 4.221 8 C 0.575 3.425 9 O -0.589 6.589 10 N -0.586 5.586 11 C 0.116 3.884 12 C -0.117 4.117 13 C -0.084 4.084 14 H 0.128 0.872 15 C -0.128 4.128 16 C 0.176 3.824 17 N -0.604 5.604 18 C -0.196 4.196 19 H 0.074 0.926 20 C -0.063 4.063 21 N -0.946 5.946 22 Si 0.939 3.061 23 H -0.291 1.291 24 H -0.302 1.302 25 H -0.265 1.265 26 C 0.138 3.862 27 H 0.043 0.957 28 C 0.091 3.909 29 C 0.177 3.823 30 N -0.544 5.544 31 H 0.069 0.931 32 H 0.103 0.897 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.160 0.840 37 H 0.140 0.860 38 H 0.069 0.931 39 H 0.110 0.890 40 H 0.092 0.908 41 H 0.026 0.974 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.020 0.980 45 H -0.014 1.014 46 H 0.239 0.761 47 H 0.082 0.918 48 H 0.117 0.883 49 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.943 -12.477 -11.438 17.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.018 4.018 3 O -0.219 6.219 4 C 0.153 3.847 5 C -0.221 4.221 6 C -0.023 4.023 7 C -0.227 4.227 8 C 0.364 3.636 9 O -0.471 6.471 10 N -0.316 5.316 11 C -0.006 4.006 12 C -0.156 4.156 13 C -0.103 4.103 14 H 0.146 0.854 15 C -0.167 4.167 16 C 0.051 3.949 17 N -0.329 5.329 18 C -0.326 4.326 19 H 0.091 0.909 20 C -0.256 4.256 21 N -0.597 5.597 22 Si 0.769 3.231 23 H -0.219 1.219 24 H -0.229 1.229 25 H -0.190 1.190 26 C 0.032 3.968 27 H 0.061 0.939 28 C -0.031 4.031 29 C 0.020 3.980 30 N -0.268 5.268 31 H 0.088 0.912 32 H 0.121 0.879 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.178 0.822 37 H 0.158 0.842 38 H 0.087 0.913 39 H 0.128 0.872 40 H 0.111 0.889 41 H 0.045 0.955 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.038 0.962 45 H 0.005 0.995 46 H 0.049 0.951 47 H 0.100 0.900 48 H 0.135 0.865 49 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -3.414 -12.472 -11.640 17.398 hybrid contribution -0.577 2.093 1.010 2.395 sum -3.992 -10.379 -10.630 15.384 Atomic orbital electron populations 1.21844 0.90832 1.04434 1.03291 1.22915 0.96439 0.79697 1.02727 1.86196 1.16093 1.32730 1.86927 1.20111 0.84589 0.90128 0.89886 1.21136 0.95270 0.96722 1.08968 1.21488 0.92373 0.99215 0.89219 1.20691 0.94253 0.96056 1.11684 1.18015 0.86447 0.81164 0.77973 1.90690 1.74903 1.32745 1.48765 1.47801 1.07428 1.28380 1.47947 1.21715 0.77983 1.03581 0.97274 1.21771 1.00890 0.98128 0.94777 1.22484 0.94622 0.98981 0.94260 0.85402 1.22990 0.97743 0.99044 0.96875 1.21059 0.87190 0.96263 0.90419 1.44496 1.14980 1.37739 1.35641 1.18952 0.90101 1.04553 1.18953 0.90869 1.25306 0.99567 0.98947 1.01743 1.70134 1.30585 1.23658 1.35301 0.85647 0.81856 0.77236 0.78359 1.21898 1.22892 1.18970 1.21097 0.94141 0.91317 0.90285 0.93919 1.22213 0.98909 0.90412 0.91612 1.23195 0.89296 0.96533 0.88971 1.67391 1.06160 1.32512 1.20699 0.91221 0.87867 0.92080 0.90824 0.92005 0.82199 0.84204 0.91261 0.87176 0.88946 0.95543 0.90895 0.90945 0.96207 0.99541 0.95122 0.90039 0.86506 0.78750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 10.28 71.98 0.74 -1.53 16 2 C 0.06 1.24 6.02 71.98 0.43 1.68 16 3 O -0.31 -8.97 10.10 -87.93 -0.89 -9.86 16 4 C 0.33 10.63 7.49 84.83 0.64 11.27 16 5 C -0.20 -6.56 10.02 22.43 0.22 -6.34 16 6 C 0.00 0.10 9.73 22.70 0.22 0.32 16 7 C -0.22 -7.93 5.40 -20.00 -0.11 -8.03 16 8 C 0.57 22.25 7.44 86.72 0.65 22.90 16 9 O -0.59 -26.47 16.30 -3.97 -0.06 -26.53 16 10 N -0.59 -19.20 2.97 -826.76 -2.45 -21.65 16 11 C 0.12 3.26 6.44 86.20 0.56 3.81 16 12 C -0.12 -3.52 5.04 30.57 0.15 -3.37 16 13 C -0.08 -2.33 3.68 -9.34 -0.03 -2.37 16 14 H 0.13 2.42 8.14 -2.39 -0.02 2.40 16 15 C -0.13 -4.23 6.33 32.19 0.20 -4.03 16 16 C 0.18 8.36 4.73 86.71 0.41 8.77 16 17 N -0.60 -28.34 3.20 -674.10 -2.15 -30.49 16 18 C -0.20 -10.38 9.62 84.03 0.81 -9.57 16 19 H 0.07 3.79 6.64 -2.91 -0.02 3.77 16 20 C -0.06 -3.59 5.45 84.86 0.46 -3.13 16 21 N -0.95 -57.92 10.55 21.65 0.23 -57.70 16 22 Si 0.94 47.07 29.56 68.60 2.03 49.10 16 23 H -0.29 -14.51 7.11 99.48 0.71 -13.80 16 24 H -0.30 -15.55 7.11 99.48 0.71 -14.84 16 25 H -0.26 -12.59 7.11 99.48 0.71 -11.89 16 26 C 0.14 4.69 2.97 44.77 0.13 4.82 16 27 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 28 C 0.09 2.66 4.02 85.77 0.35 3.01 16 29 C 0.18 5.36 8.58 85.02 0.73 6.09 16 30 N -0.54 -16.82 9.18 -307.83 -2.83 -19.64 16 31 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 34 H 0.07 1.49 8.10 -2.39 -0.02 1.47 16 35 H 0.06 1.43 8.10 -2.39 -0.02 1.41 16 36 H 0.16 4.50 8.06 -2.91 -0.02 4.48 16 37 H 0.14 5.12 8.02 -2.91 -0.02 5.10 16 38 H 0.07 2.22 7.06 -2.39 -0.02 2.20 16 39 H 0.11 2.12 8.14 -2.39 -0.02 2.11 16 40 H 0.09 2.19 8.14 -2.39 -0.02 2.18 16 41 H 0.03 1.09 6.85 -2.39 -0.02 1.08 16 42 H 0.07 2.22 7.97 -2.39 -0.02 2.20 16 43 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.02 1.11 6.48 -2.39 -0.02 1.10 16 45 H -0.01 -0.74 8.06 -2.39 -0.02 -0.76 16 46 H 0.24 14.59 8.31 -92.71 -0.77 13.82 16 47 H 0.08 2.67 2.91 -2.39 -0.01 2.67 16 48 H 0.12 2.22 8.01 -2.39 -0.02 2.20 16 49 H 0.20 4.63 5.74 -2.91 -0.02 4.61 16 Total: -1.00 -75.80 381.86 1.39 -74.42 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: 0.96 Total: 18.05 kcal Atomic # 6 Polarization: 17.74 SS G_CDS: 6.56 Total: 24.30 kcal Atomic # 7 Polarization: -122.27 SS G_CDS: -7.21 Total: -129.48 kcal Atomic # 8 Polarization: -35.44 SS G_CDS: -0.95 Total: -36.39 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Total: -75.80 1.39 -74.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042082220.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.519 kcal (2) G-P(sol) polarization free energy of solvation -75.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds