Wall clock time and date at job start Wed Apr 1 2020 05:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42899 * 109.47308 * 2 1 4 4 C 1.35493 * 117.00184 * 179.97438 * 3 2 1 5 5 C 1.39174 * 119.52658 * 179.97438 * 4 3 2 6 6 C 1.37952 * 119.26123 * 179.97438 * 5 4 3 7 7 C 1.40283 * 118.35930 * 0.02562 * 6 5 4 8 8 C 1.47613 * 120.49676 * 180.02562 * 7 6 5 9 9 O 1.21581 * 119.99501 * 219.16121 * 8 7 6 10 10 N 1.34775 * 120.00420 * 39.43163 * 8 7 6 11 11 C 1.46592 * 119.75243 * 5.62269 * 10 8 7 12 12 C 1.53887 * 110.70586 * 132.24999 * 11 10 8 13 13 C 1.51978 * 107.28926 * 51.81789 * 12 11 10 14 14 H 1.09000 * 111.01515 * 56.51607 * 13 12 11 15 15 C 1.53700 * 115.00455 * 184.55220 * 13 12 11 16 16 C 1.55300 * 101.81485 * 153.46636 * 15 13 12 17 17 N 1.48157 * 107.04099 * 337.55573 * 16 15 13 18 18 C 1.36935 * 126.39896 * 175.03083 * 17 16 15 19 19 H 1.07999 * 120.00128 * 179.97438 * 18 17 16 20 20 C 1.38821 * 119.99826 * 359.95575 * 18 17 16 21 21 N 1.31614 * 119.99707 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99916 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47186 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47001 * 119.99899 * 22 20 18 25 25 H 1.48492 * 109.47180 * 240.00406 * 22 20 18 26 26 C 1.45507 * 107.20415 * 354.99812 * 17 16 15 27 27 H 1.09005 * 109.56412 * 273.37742 * 26 17 16 28 28 C 1.47800 * 119.75364 * 185.35201 * 10 8 7 29 29 C 1.39519 * 119.00446 * 0.26808 * 7 6 5 30 30 N 1.31673 * 120.62546 * 359.45554 * 29 7 6 31 31 H 1.08997 * 109.47389 * 300.00250 * 1 2 3 32 32 H 1.09005 * 109.46924 * 60.00318 * 1 2 3 33 33 H 1.09004 * 109.47202 * 179.97438 * 1 2 3 34 34 H 1.08994 * 109.46884 * 239.99667 * 2 1 3 35 35 H 1.09005 * 109.46924 * 119.99681 * 2 1 3 36 36 H 1.07996 * 120.36468 * 0.02562 * 5 4 3 37 37 H 1.08003 * 120.81638 * 180.02562 * 6 5 4 38 38 H 1.08999 * 109.23300 * 252.57245 * 11 10 8 39 39 H 1.09001 * 109.23011 * 11.98198 * 11 10 8 40 40 H 1.09001 * 109.89225 * 171.26156 * 12 11 10 41 41 H 1.09004 * 109.89558 * 292.29236 * 12 11 10 42 42 H 1.09007 * 110.96090 * 271.59871 * 15 13 12 43 43 H 1.09000 * 110.96224 * 35.33937 * 15 13 12 44 44 H 1.08991 * 109.92338 * 218.20600 * 16 15 13 45 45 H 1.09001 * 110.08493 * 96.99106 * 16 15 13 46 46 H 0.97000 * 119.99548 * 179.97438 * 21 20 18 47 47 H 1.08995 * 110.06309 * 350.47788 * 28 10 8 48 48 H 1.08999 * 110.06004 * 112.04110 * 28 10 8 49 49 H 1.07998 * 119.69136 * 179.73234 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3496 1.5248 0.0005 5 6 3.8709 2.8152 0.0000 6 6 5.2394 2.9896 0.0011 7 6 6.0564 1.8493 0.0022 8 6 7.5267 1.9812 0.0039 9 8 8.2058 1.2223 -0.6602 10 7 8.1165 2.9393 0.7459 11 6 7.3052 3.7669 1.6436 12 6 7.9510 3.8514 3.0378 13 6 9.3963 4.2783 2.8410 14 1 9.4549 5.2189 2.2935 15 6 10.2437 4.3132 4.1229 16 6 11.6741 4.0798 3.5649 17 7 11.5240 3.4091 2.2523 18 6 12.5306 3.1062 1.3748 19 1 12.3031 2.6129 0.4414 20 6 13.8436 3.4334 1.6849 21 7 14.1207 4.0353 2.8221 22 14 15.2169 3.0195 0.4882 23 1 14.6460 2.3501 -0.7081 24 1 15.9060 4.2682 0.0745 25 1 16.1903 2.1117 1.1466 26 6 10.1073 3.1318 2.0702 27 1 9.8604 2.1751 2.5306 28 6 9.5773 3.1438 0.6529 29 6 5.4586 0.5887 -0.0036 30 7 4.1474 0.4681 0.0007 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 3.2114 3.6704 -0.0004 37 1 5.6710 3.9797 0.0012 38 1 7.2185 4.7702 1.2266 39 1 6.3112 3.3291 1.7351 40 1 7.4261 4.5884 3.6457 41 1 7.9140 2.8762 3.5235 42 1 10.1699 5.2841 4.6128 43 1 9.9550 3.5119 4.8031 44 1 12.2387 3.4423 4.2452 45 1 12.1867 5.0333 3.4382 46 1 15.0382 4.2637 3.0389 47 1 10.0320 2.3371 0.0780 48 1 9.7913 4.1047 0.1849 49 1 6.0771 -0.2967 -0.0073 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042082221.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:42 Heat of formation + Delta-G solvation = 2.922332 kcal Electronic energy + Delta-G solvation = -30537.189491 eV Core-core repulsion = 26465.780911 eV Total energy + Delta-G solvation = -4071.408580 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.22155 -40.06488 -38.58394 -37.76124 -35.51412 -33.16818 -32.77698 -32.48722 -31.28045 -30.58940 -29.19082 -28.45840 -25.16559 -24.64943 -24.53557 -23.18404 -22.70694 -22.15163 -20.33399 -19.92433 -19.30289 -18.86139 -17.49754 -17.00257 -16.68618 -16.48057 -15.96638 -15.15495 -15.01595 -14.77496 -14.46131 -14.35195 -14.27355 -14.15091 -13.87698 -13.61579 -13.34236 -13.15615 -12.95593 -12.81463 -12.66221 -12.48239 -12.26944 -11.96808 -11.89766 -11.55340 -11.33541 -11.11491 -10.98330 -10.81545 -10.77703 -10.27450 -10.17464 -10.13343 -9.97307 -9.83669 -9.71891 -9.61910 -9.48564 -8.83242 -8.63441 -8.46240 -6.85955 -5.72178 -3.05891 0.57818 0.86122 2.60571 2.73698 3.02860 3.41295 3.48057 3.50251 3.51922 3.93971 4.36545 4.49614 4.52331 4.61271 4.61891 4.71159 4.74280 4.86288 4.96273 5.00352 5.08887 5.25965 5.35710 5.37109 5.42712 5.43056 5.51189 5.59470 5.63072 5.65971 5.74445 5.75467 5.89360 5.97720 6.01259 6.05765 6.10423 6.15551 6.36256 6.46448 6.54389 6.68183 6.73150 6.86025 7.03699 7.42207 7.52031 7.55379 7.60681 7.81444 8.21011 8.24149 9.18872 9.81777 10.48241 11.40159 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.022098 B = 0.002361 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.787338 B =11857.862526 C =12696.551438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.064 3.936 3 O -0.305 6.305 4 C 0.338 3.662 5 C -0.197 4.197 6 C -0.011 4.011 7 C -0.215 4.215 8 C 0.563 3.437 9 O -0.533 6.533 10 N -0.599 5.599 11 C 0.101 3.899 12 C -0.120 4.120 13 C -0.112 4.112 14 H 0.078 0.922 15 C -0.137 4.137 16 C 0.177 3.823 17 N -0.592 5.592 18 C -0.227 4.227 19 H 0.080 0.920 20 C -0.007 4.007 21 N -0.921 5.921 22 Si 0.910 3.090 23 H -0.278 1.278 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.156 3.844 27 H 0.024 0.976 28 C 0.116 3.884 29 C 0.197 3.803 30 N -0.543 5.543 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.148 0.852 37 H 0.151 0.849 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.037 0.963 45 H 0.056 0.944 46 H 0.252 0.748 47 H 0.094 0.906 48 H 0.072 0.928 49 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.034 -1.204 -1.712 26.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.011 4.011 3 O -0.212 6.212 4 C 0.159 3.841 5 C -0.217 4.217 6 C -0.037 4.037 7 C -0.221 4.221 8 C 0.350 3.650 9 O -0.411 6.411 10 N -0.332 5.332 11 C -0.022 4.022 12 C -0.159 4.159 13 C -0.132 4.132 14 H 0.096 0.904 15 C -0.176 4.176 16 C 0.052 3.948 17 N -0.317 5.317 18 C -0.355 4.355 19 H 0.098 0.902 20 C -0.203 4.203 21 N -0.569 5.569 22 Si 0.740 3.260 23 H -0.204 1.204 24 H -0.218 1.218 25 H -0.218 1.218 26 C 0.047 3.953 27 H 0.041 0.959 28 C -0.006 4.006 29 C 0.040 3.960 30 N -0.267 5.267 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.165 0.835 37 H 0.168 0.832 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.055 0.945 45 H 0.075 0.925 46 H 0.062 0.938 47 H 0.112 0.888 48 H 0.090 0.910 49 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -26.019 -2.219 -2.081 26.197 hybrid contribution 1.207 0.463 -0.485 1.381 sum -24.812 -1.757 -2.566 25.006 Atomic orbital electron populations 1.21830 0.92895 1.03019 1.03335 1.22666 0.94805 0.80771 1.02853 1.86198 1.16817 1.31088 1.87055 1.20044 0.84094 0.90066 0.89886 1.20988 0.95473 0.95866 1.09403 1.21728 0.92121 0.99116 0.90688 1.20832 0.94890 0.95351 1.11041 1.17979 0.86502 0.80494 0.80020 1.90813 1.64766 1.42308 1.43171 1.48176 1.09068 1.34731 1.41211 1.22037 0.94430 0.94939 0.90754 1.21819 0.96652 1.02029 0.95366 1.22263 0.92841 0.99616 0.98478 0.90411 1.22715 0.98577 1.00254 0.96010 1.21551 0.89868 0.97729 0.85613 1.44175 0.99494 1.69232 1.18771 1.19096 0.85605 1.32506 0.98334 0.90179 1.24790 0.97231 1.00826 0.97486 1.69952 1.18167 1.46070 1.22676 0.86067 0.82233 0.77509 0.80165 1.20352 1.21789 1.21765 1.20891 0.86551 0.95272 0.92610 0.95895 1.21692 0.76544 1.02710 0.99618 1.22564 0.88577 0.96544 0.88321 1.67428 1.06243 1.32683 1.20313 0.91596 0.91630 0.90191 0.91375 0.91343 0.83455 0.83156 0.91492 0.89966 0.90779 0.91379 0.92210 0.92544 0.94455 0.92541 0.93815 0.88767 0.90968 0.81304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 10.28 37.16 0.38 -0.42 16 2 C 0.06 0.50 6.02 37.16 0.22 0.72 16 3 O -0.30 -2.98 10.10 -18.17 -0.18 -3.17 16 4 C 0.34 3.60 7.49 -16.96 -0.13 3.47 16 5 C -0.20 -1.76 10.02 -39.34 -0.39 -2.15 16 6 C -0.01 -0.10 7.52 -38.92 -0.29 -0.40 16 7 C -0.22 -2.63 5.07 -104.83 -0.53 -3.16 16 8 C 0.56 8.75 7.33 -12.44 -0.09 8.66 16 9 O -0.53 -10.35 16.29 5.29 0.09 -10.26 16 10 N -0.60 -8.94 3.02 -174.21 -0.53 -9.46 16 11 C 0.10 1.14 4.75 -3.53 -0.02 1.12 16 12 C -0.12 -1.48 5.72 -26.79 -0.15 -1.64 16 13 C -0.11 -1.83 2.62 -89.52 -0.23 -2.07 16 14 H 0.08 1.30 8.13 -51.93 -0.42 0.87 16 15 C -0.14 -2.44 6.54 -25.15 -0.16 -2.60 16 16 C 0.18 4.18 5.46 -1.91 -0.01 4.17 16 17 N -0.59 -14.72 3.35 -163.17 -0.55 -15.27 16 18 C -0.23 -6.25 9.88 -15.06 -0.15 -6.40 16 19 H 0.08 2.16 7.41 -52.49 -0.39 1.77 16 20 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 21 N -0.92 -26.83 10.43 55.49 0.58 -26.26 16 22 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 C 0.16 3.14 2.74 -68.05 -0.19 2.95 16 27 H 0.02 0.51 7.93 -51.93 -0.41 0.10 16 28 C 0.12 2.15 5.67 -4.18 -0.02 2.13 16 29 C 0.20 2.37 10.79 -17.14 -0.19 2.18 16 30 N -0.54 -6.33 9.18 -12.97 -0.12 -6.44 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 35 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 36 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 37 H 0.15 1.13 6.40 -52.48 -0.34 0.79 16 38 H 0.07 0.64 7.85 -51.93 -0.41 0.23 16 39 H 0.08 0.78 4.90 -51.93 -0.25 0.53 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.89 7.99 -51.93 -0.41 0.48 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.06 0.95 8.12 -51.93 -0.42 0.53 16 44 H 0.04 0.98 7.77 -51.93 -0.40 0.57 16 45 H 0.06 1.47 7.19 -51.93 -0.37 1.10 16 46 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 47 H 0.09 1.98 6.74 -51.93 -0.35 1.63 16 48 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 49 H 0.17 1.93 8.05 -52.49 -0.42 1.51 16 LS Contribution 386.54 15.07 5.83 5.83 Total: -1.00 -32.66 386.54 -9.50 -42.16 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -7.54 Total: -0.65 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: -2.05 Total: 6.26 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: -0.61 Total: -57.43 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -0.10 Total: -13.43 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.66 -9.50 -42.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042082221.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.086 kcal (2) G-P(sol) polarization free energy of solvation -32.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds