Wall clock time and date at job start Wed Apr 1 2020 05:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42899 * 109.47308 * 2 1 4 4 C 1.35493 * 117.00184 * 179.97438 * 3 2 1 5 5 C 1.39174 * 119.52658 * 179.97438 * 4 3 2 6 6 C 1.37952 * 119.26123 * 179.97438 * 5 4 3 7 7 C 1.40283 * 118.35930 * 0.02562 * 6 5 4 8 8 C 1.47613 * 120.49676 * 180.02562 * 7 6 5 9 9 O 1.21581 * 119.99501 * 219.16121 * 8 7 6 10 10 N 1.34775 * 120.00420 * 39.43163 * 8 7 6 11 11 C 1.46592 * 119.75243 * 5.62269 * 10 8 7 12 12 C 1.53887 * 110.70586 * 132.24999 * 11 10 8 13 13 C 1.51978 * 107.28926 * 51.81789 * 12 11 10 14 14 H 1.09000 * 111.01515 * 56.51607 * 13 12 11 15 15 C 1.53700 * 115.00455 * 184.55220 * 13 12 11 16 16 C 1.55300 * 101.81485 * 153.46636 * 15 13 12 17 17 N 1.48157 * 107.04099 * 337.55573 * 16 15 13 18 18 C 1.36935 * 126.39896 * 175.03083 * 17 16 15 19 19 H 1.07999 * 120.00128 * 179.97438 * 18 17 16 20 20 C 1.38821 * 119.99826 * 359.95575 * 18 17 16 21 21 N 1.31614 * 119.99707 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99916 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47186 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47001 * 119.99899 * 22 20 18 25 25 H 1.48492 * 109.47180 * 240.00406 * 22 20 18 26 26 C 1.45507 * 107.20415 * 354.99812 * 17 16 15 27 27 H 1.09005 * 109.56412 * 273.37742 * 26 17 16 28 28 C 1.47800 * 119.75364 * 185.35201 * 10 8 7 29 29 C 1.39519 * 119.00446 * 0.26808 * 7 6 5 30 30 N 1.31673 * 120.62546 * 359.45554 * 29 7 6 31 31 H 1.08997 * 109.47389 * 300.00250 * 1 2 3 32 32 H 1.09005 * 109.46924 * 60.00318 * 1 2 3 33 33 H 1.09004 * 109.47202 * 179.97438 * 1 2 3 34 34 H 1.08994 * 109.46884 * 239.99667 * 2 1 3 35 35 H 1.09005 * 109.46924 * 119.99681 * 2 1 3 36 36 H 1.07996 * 120.36468 * 0.02562 * 5 4 3 37 37 H 1.08003 * 120.81638 * 180.02562 * 6 5 4 38 38 H 1.08999 * 109.23300 * 252.57245 * 11 10 8 39 39 H 1.09001 * 109.23011 * 11.98198 * 11 10 8 40 40 H 1.09001 * 109.89225 * 171.26156 * 12 11 10 41 41 H 1.09004 * 109.89558 * 292.29236 * 12 11 10 42 42 H 1.09007 * 110.96090 * 271.59871 * 15 13 12 43 43 H 1.09000 * 110.96224 * 35.33937 * 15 13 12 44 44 H 1.08991 * 109.92338 * 218.20600 * 16 15 13 45 45 H 1.09001 * 110.08493 * 96.99106 * 16 15 13 46 46 H 0.97000 * 119.99548 * 179.97438 * 21 20 18 47 47 H 1.08995 * 110.06309 * 350.47788 * 28 10 8 48 48 H 1.08999 * 110.06004 * 112.04110 * 28 10 8 49 49 H 1.07998 * 119.69136 * 179.73234 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3496 1.5248 0.0005 5 6 3.8709 2.8152 0.0000 6 6 5.2394 2.9896 0.0011 7 6 6.0564 1.8493 0.0022 8 6 7.5267 1.9812 0.0039 9 8 8.2058 1.2223 -0.6602 10 7 8.1165 2.9393 0.7459 11 6 7.3052 3.7669 1.6436 12 6 7.9510 3.8514 3.0378 13 6 9.3963 4.2783 2.8410 14 1 9.4549 5.2189 2.2935 15 6 10.2437 4.3132 4.1229 16 6 11.6741 4.0798 3.5649 17 7 11.5240 3.4091 2.2523 18 6 12.5306 3.1062 1.3748 19 1 12.3031 2.6129 0.4414 20 6 13.8436 3.4334 1.6849 21 7 14.1207 4.0353 2.8221 22 14 15.2169 3.0195 0.4882 23 1 14.6460 2.3501 -0.7081 24 1 15.9060 4.2682 0.0745 25 1 16.1903 2.1117 1.1466 26 6 10.1073 3.1318 2.0702 27 1 9.8604 2.1751 2.5306 28 6 9.5773 3.1438 0.6529 29 6 5.4586 0.5887 -0.0036 30 7 4.1474 0.4681 0.0007 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 3.2114 3.6704 -0.0004 37 1 5.6710 3.9797 0.0012 38 1 7.2185 4.7702 1.2266 39 1 6.3112 3.3291 1.7351 40 1 7.4261 4.5884 3.6457 41 1 7.9140 2.8762 3.5235 42 1 10.1699 5.2841 4.6128 43 1 9.9550 3.5119 4.8031 44 1 12.2387 3.4423 4.2452 45 1 12.1867 5.0333 3.4382 46 1 15.0382 4.2637 3.0389 47 1 10.0320 2.3371 0.0780 48 1 9.7913 4.1047 0.1849 49 1 6.0771 -0.2967 -0.0073 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042082221.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:40 Heat of formation + Delta-G solvation = -19.111016 kcal Electronic energy + Delta-G solvation = -30538.144929 eV Core-core repulsion = 26465.780911 eV Total energy + Delta-G solvation = -4072.364017 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.16042 -41.18205 -39.82010 -38.76371 -36.95177 -34.74374 -33.84370 -33.15461 -32.84691 -31.52505 -30.55398 -30.04992 -26.60588 -26.10064 -25.41774 -24.32403 -23.68869 -23.10495 -21.80998 -21.51209 -20.55155 -19.61548 -18.76737 -18.32249 -17.83899 -17.37672 -17.16920 -16.84342 -16.31144 -15.86872 -15.72708 -15.66465 -15.30903 -15.11028 -14.94152 -14.86329 -14.48529 -14.42595 -14.04691 -13.81759 -13.70237 -13.49705 -13.33936 -13.28459 -13.09840 -13.03631 -12.77799 -12.53799 -12.48460 -12.12079 -11.98160 -11.78016 -11.73320 -11.53965 -11.43975 -11.25915 -11.02780 -10.87384 -10.74079 -10.67501 -9.81195 -9.57355 -8.91075 -7.87107 -5.21713 -0.29757 0.09985 1.43064 1.43842 1.54230 1.58589 1.83105 1.96771 2.48396 2.63783 3.13023 3.31234 3.36881 3.52181 3.72388 3.80042 3.92894 3.95891 3.99126 4.01277 4.09148 4.19380 4.26771 4.30277 4.33148 4.46493 4.53422 4.60043 4.62375 4.70228 4.74633 4.83414 4.86077 4.89389 4.92041 4.96753 4.96939 5.11931 5.15772 5.20518 5.24114 5.29508 5.38160 5.50094 5.60221 5.66638 5.79030 6.11514 6.18903 6.32070 6.64813 7.02478 7.07780 7.76082 8.42930 9.23927 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.022098 B = 0.002361 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.787338 B =11857.862526 C =12696.551438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.059 3.941 3 O -0.307 6.307 4 C 0.328 3.672 5 C -0.182 4.182 6 C 0.001 3.999 7 C -0.225 4.225 8 C 0.562 3.438 9 O -0.585 6.585 10 N -0.596 5.596 11 C 0.095 3.905 12 C -0.112 4.112 13 C -0.094 4.094 14 H 0.082 0.918 15 C -0.122 4.122 16 C 0.179 3.821 17 N -0.613 5.613 18 C -0.234 4.234 19 H 0.076 0.924 20 C -0.063 4.063 21 N -0.948 5.948 22 Si 0.971 3.029 23 H -0.271 1.271 24 H -0.288 1.288 25 H -0.293 1.293 26 C 0.146 3.854 27 H 0.004 0.996 28 C 0.129 3.871 29 C 0.188 3.812 30 N -0.556 5.556 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.181 0.819 37 H 0.179 0.821 38 H 0.100 0.900 39 H 0.109 0.891 40 H 0.116 0.884 41 H 0.060 0.940 42 H 0.088 0.912 43 H 0.067 0.933 44 H -0.003 1.003 45 H 0.025 0.975 46 H 0.247 0.753 47 H 0.057 0.943 48 H 0.073 0.927 49 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.848 0.564 -1.601 29.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.016 4.016 3 O -0.214 6.214 4 C 0.149 3.851 5 C -0.202 4.202 6 C -0.024 4.024 7 C -0.231 4.231 8 C 0.351 3.649 9 O -0.466 6.466 10 N -0.327 5.327 11 C -0.025 4.025 12 C -0.150 4.150 13 C -0.114 4.114 14 H 0.101 0.899 15 C -0.160 4.160 16 C 0.055 3.945 17 N -0.338 5.338 18 C -0.363 4.363 19 H 0.093 0.907 20 C -0.256 4.256 21 N -0.597 5.597 22 Si 0.800 3.200 23 H -0.196 1.196 24 H -0.215 1.215 25 H -0.220 1.220 26 C 0.038 3.962 27 H 0.021 0.979 28 C 0.006 3.994 29 C 0.031 3.969 30 N -0.280 5.280 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.115 0.885 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.198 0.802 37 H 0.196 0.804 38 H 0.118 0.882 39 H 0.127 0.873 40 H 0.135 0.865 41 H 0.078 0.922 42 H 0.106 0.894 43 H 0.085 0.915 44 H 0.015 0.985 45 H 0.043 0.957 46 H 0.056 0.944 47 H 0.075 0.925 48 H 0.091 0.909 49 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -29.903 -0.440 -1.956 29.970 hybrid contribution 2.307 -0.165 -0.515 2.369 sum -27.596 -0.605 -2.471 27.713 Atomic orbital electron populations 1.21834 0.90846 1.04221 1.03558 1.22837 0.96402 0.79969 1.02379 1.86214 1.16296 1.32106 1.86786 1.20448 0.84408 0.90675 0.89544 1.21323 0.95516 0.96046 1.07364 1.21969 0.91986 0.99140 0.89333 1.20536 0.92677 0.96580 1.13304 1.18495 0.87832 0.79528 0.79030 1.90785 1.66237 1.44237 1.45334 1.48199 1.07566 1.35196 1.41772 1.22421 0.94591 0.96119 0.89417 1.21828 0.93750 1.02768 0.96692 1.22197 0.94905 0.97879 0.96403 0.89920 1.22590 0.94433 1.02149 0.96820 1.21376 0.93307 0.95025 0.84809 1.44441 1.01275 1.69132 1.18913 1.19347 0.86730 1.31709 0.98555 0.90653 1.25556 0.99365 1.01533 0.99195 1.70152 1.18060 1.47323 1.24153 0.85111 0.79347 0.77139 0.78404 1.19598 1.21455 1.22021 1.21045 0.84699 0.96108 0.94321 0.97905 1.21249 0.79071 1.01234 0.97851 1.22483 0.88855 0.96590 0.88958 1.67402 1.05956 1.33670 1.20951 0.91273 0.91426 0.88547 0.91982 0.91740 0.80181 0.80367 0.88238 0.87322 0.86538 0.92152 0.89374 0.91467 0.98480 0.95674 0.94382 0.92455 0.90856 0.82128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.28 71.98 0.74 -0.48 16 2 C 0.06 0.82 6.02 71.98 0.43 1.25 16 3 O -0.31 -5.25 10.10 -87.94 -0.89 -6.14 16 4 C 0.33 6.14 7.49 84.83 0.64 6.77 16 5 C -0.18 -2.47 10.02 22.43 0.22 -2.25 16 6 C 0.00 0.01 7.52 22.70 0.17 0.18 16 7 C -0.23 -5.11 5.07 -20.00 -0.10 -5.21 16 8 C 0.56 17.27 7.33 86.72 0.64 17.91 16 9 O -0.58 -23.71 16.29 -3.97 -0.06 -23.78 16 10 N -0.60 -16.94 3.02 -823.35 -2.48 -19.42 16 11 C 0.10 1.72 4.75 86.66 0.41 2.13 16 12 C -0.11 -2.28 5.72 30.56 0.17 -2.10 16 13 C -0.09 -2.86 2.62 -10.08 -0.03 -2.89 16 14 H 0.08 2.49 8.13 -2.39 -0.02 2.47 16 15 C -0.12 -4.14 6.54 31.62 0.21 -3.93 16 16 C 0.18 8.78 5.46 86.85 0.47 9.25 16 17 N -0.61 -31.63 3.35 -670.14 -2.24 -33.87 16 18 C -0.23 -13.42 9.88 84.04 0.83 -12.59 16 19 H 0.08 4.27 7.41 -2.91 -0.02 4.25 16 20 C -0.06 -3.69 5.49 84.86 0.47 -3.22 16 21 N -0.95 -57.57 10.43 21.65 0.23 -57.34 16 22 Si 0.97 47.33 29.55 68.60 2.03 49.35 16 23 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 24 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 25 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 26 C 0.15 5.96 2.74 45.44 0.12 6.09 16 27 H 0.00 0.16 7.93 -2.38 -0.02 0.14 16 28 C 0.13 4.86 5.67 85.58 0.49 5.35 16 29 C 0.19 4.44 10.79 85.03 0.92 5.36 16 30 N -0.56 -12.30 9.18 -307.82 -2.82 -15.12 16 31 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 33 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.06 0.93 8.10 -2.39 -0.02 0.91 16 35 H 0.06 0.94 8.10 -2.38 -0.02 0.92 16 36 H 0.18 1.30 8.06 -2.91 -0.02 1.27 16 37 H 0.18 1.64 6.40 -2.91 -0.02 1.63 16 38 H 0.10 1.27 7.85 -2.39 -0.02 1.25 16 39 H 0.11 1.48 4.90 -2.39 -0.01 1.47 16 40 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.06 1.37 7.99 -2.39 -0.02 1.35 16 42 H 0.09 2.53 8.14 -2.38 -0.02 2.51 16 43 H 0.07 2.15 8.12 -2.39 -0.02 2.13 16 44 H 0.00 -0.17 7.77 -2.39 -0.02 -0.19 16 45 H 0.02 1.36 7.19 -2.39 -0.02 1.35 16 46 H 0.25 14.56 8.31 -92.71 -0.77 13.78 16 47 H 0.06 2.56 6.74 -2.39 -0.02 2.55 16 48 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 49 H 0.16 3.88 8.05 -2.91 -0.02 3.86 16 Total: -1.00 -77.55 386.54 1.50 -76.05 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: 0.95 Total: 8.66 kcal Atomic # 6 Polarization: 14.81 SS G_CDS: 6.80 Total: 21.61 kcal Atomic # 7 Polarization: -118.43 SS G_CDS: -7.33 Total: -125.76 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -0.95 Total: -29.92 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.35 kcal Total: -77.55 1.50 -76.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042082221.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.939 kcal (2) G-P(sol) polarization free energy of solvation -77.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds