Wall clock time and date at job start Wed Apr 1 2020 05:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.47079 * 2 1 4 4 C 1.35686 * 116.99990 * 179.97438 * 3 2 1 5 5 C 1.38898 * 119.62645 * 180.02562 * 4 3 2 6 6 C 1.39571 * 118.94700 * 180.02562 * 5 4 3 7 7 C 1.48166 * 120.89039 * 179.97438 * 6 5 4 8 8 O 1.21517 * 119.99704 * 32.89969 * 7 6 5 9 9 N 1.34770 * 120.00179 * 212.89433 * 7 6 5 10 10 C 1.47151 * 121.21400 * 5.30454 * 9 7 6 11 11 C 1.53329 * 107.71812 * 122.68800 * 10 9 7 12 12 C 1.53092 * 110.50417 * 57.57260 * 11 10 9 13 13 H 1.09001 * 113.06102 * 70.85967 * 12 11 10 14 14 C 1.56017 * 106.39813 * 195.29427 * 12 11 10 15 15 C 1.54499 * 102.61735 * 78.37960 * 14 12 11 16 16 N 1.47442 * 107.14561 * 22.84081 * 15 14 12 17 17 C 1.36934 * 126.05812 * 181.66393 * 16 15 14 18 18 H 1.08003 * 120.00027 * 186.13615 * 17 16 15 19 19 C 1.38810 * 120.00282 * 6.13759 * 17 16 15 20 20 N 1.31620 * 120.00061 * 351.96154 * 19 17 16 21 21 Si 1.86806 * 120.00201 * 171.96159 * 19 17 16 22 22 H 1.48503 * 109.46964 * 94.98069 * 21 19 17 23 23 H 1.48495 * 109.46962 * 214.98395 * 21 19 17 24 24 H 1.48502 * 109.46871 * 334.98602 * 21 19 17 25 25 C 1.46464 * 107.88009 * 1.62838 * 16 15 14 26 26 H 1.09004 * 108.41807 * 89.23535 * 25 16 15 27 27 C 1.46755 * 121.21404 * 185.58012 * 9 7 6 28 28 C 1.39962 * 118.21896 * 0.02562 * 6 5 4 29 29 C 1.37978 * 119.13225 * 0.27880 * 28 6 5 30 30 N 1.31911 * 120.97930 * 359.40338 * 29 28 6 31 31 H 1.09000 * 109.47264 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46859 * 300.00016 * 1 2 3 33 33 H 1.09003 * 109.46848 * 59.99492 * 1 2 3 34 34 H 1.09005 * 109.46830 * 240.00570 * 2 1 3 35 35 H 1.08991 * 109.47217 * 120.00654 * 2 1 3 36 36 H 1.07999 * 120.52510 * 0.02718 * 5 4 3 37 37 H 1.09004 * 109.75721 * 242.33792 * 10 9 7 38 38 H 1.09004 * 109.76268 * 3.09244 * 10 9 7 39 39 H 1.09003 * 109.39496 * 297.24543 * 11 10 9 40 40 H 1.09003 * 109.16169 * 177.74650 * 11 10 9 41 41 H 1.08993 * 110.78296 * 320.09577 * 14 12 11 42 42 H 1.09004 * 110.94225 * 196.73404 * 14 12 11 43 43 H 1.08999 * 109.90294 * 263.46443 * 15 14 12 44 44 H 1.08999 * 110.05975 * 142.30354 * 15 14 12 45 45 H 0.96998 * 120.00095 * 180.02562 * 20 19 17 46 46 H 1.08992 * 109.22886 * 352.83214 * 27 9 7 47 47 H 1.09001 * 109.22534 * 112.19830 * 27 9 7 48 48 H 1.08000 * 120.43260 * 179.97438 * 28 6 5 49 49 H 1.08008 * 119.51115 * 179.70042 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3515 1.5251 0.0005 5 6 3.8740 2.8120 0.0011 6 6 5.2597 2.9785 0.0011 7 6 5.8633 4.3316 0.0011 8 8 5.3039 5.2464 0.5728 9 7 7.0329 4.5478 -0.6327 10 6 7.6753 3.4905 -1.4294 11 6 7.8602 4.0267 -2.8539 12 6 8.6908 5.3126 -2.8392 13 1 9.7396 5.1407 -2.5973 14 6 8.4924 5.9811 -4.2349 15 6 7.1033 6.6434 -4.0974 16 7 6.8567 6.8413 -2.6573 17 6 5.7242 7.3710 -2.0988 18 1 5.6851 7.5638 -1.0368 19 6 4.6263 7.6601 -2.8975 20 7 4.7248 7.5758 -4.2073 21 14 3.0089 8.1690 -2.1134 22 1 2.9234 9.6510 -2.0724 23 1 1.8799 7.6298 -2.9132 24 1 2.9380 7.6307 -0.7312 25 6 8.0375 6.3701 -1.9300 26 1 8.7350 7.2017 -1.8300 27 6 7.7151 5.8444 -0.5487 28 6 6.0639 1.8329 0.0000 29 6 5.4634 0.5907 -0.0069 30 7 4.1497 0.4715 -0.0007 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5139 0.8898 36 1 3.2184 3.6702 0.0016 37 1 8.6447 3.2414 -0.9977 38 1 7.0404 2.6046 -1.4465 39 1 6.8839 4.2344 -3.2920 40 1 8.3717 3.2753 -3.4555 41 1 8.4866 5.2311 -5.0256 42 1 9.2615 6.7308 -4.4207 43 1 6.3381 5.9915 -4.5187 44 1 7.0951 7.6049 -4.6108 45 1 3.9578 7.7781 -4.7654 46 1 7.0698 6.5570 -0.0351 47 1 8.6402 5.7273 0.0157 48 1 7.1404 1.9202 -0.0005 49 1 6.0781 -0.2974 -0.0128 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042234784.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:58 Heat of formation + Delta-G solvation = 13.612045 kcal Electronic energy + Delta-G solvation = -31882.586602 eV Core-core repulsion = 27811.641563 eV Total energy + Delta-G solvation = -4070.945039 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.96598 -39.83061 -38.35753 -37.61372 -35.13394 -32.83902 -32.72475 -32.23821 -31.09604 -30.06019 -29.10915 -28.37201 -25.48831 -24.57577 -23.73040 -23.57362 -22.52288 -22.41037 -20.28645 -19.96550 -18.74258 -18.00083 -17.24936 -16.57329 -16.39871 -16.19166 -15.81024 -15.44620 -14.86951 -14.82743 -14.32419 -14.15969 -13.99311 -13.95148 -13.90308 -13.50149 -13.05001 -12.83750 -12.80283 -12.62560 -12.44809 -12.10422 -11.96915 -11.69417 -11.51149 -11.42392 -11.20941 -10.92730 -10.87715 -10.77140 -10.65996 -10.08049 -10.04387 -9.91243 -9.86815 -9.83785 -9.65906 -9.50332 -9.26573 -8.53336 -8.45515 -8.18007 -6.74304 -5.63345 -2.93549 0.82243 1.06887 2.77647 3.12924 3.35319 3.49393 3.56182 3.65830 3.82141 4.16877 4.50511 4.61928 4.84088 4.84257 4.87167 4.95074 5.01570 5.09548 5.12843 5.21144 5.31003 5.46198 5.47580 5.54431 5.63865 5.65492 5.65922 5.69040 5.71984 5.80778 5.86219 5.94884 6.01165 6.06649 6.12415 6.23033 6.26510 6.30354 6.42788 6.48214 6.60803 6.73299 6.93194 7.05393 7.16732 7.60922 7.68008 7.70717 7.77744 7.93504 8.32474 8.52724 9.31252 9.92686 10.56969 11.49422 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010221 B = 0.004274 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2738.898840 B = 6549.870116 C = 8134.946737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.067 3.933 3 O -0.304 6.304 4 C 0.322 3.678 5 C -0.134 4.134 6 C -0.035 4.035 7 C 0.561 3.439 8 O -0.515 6.515 9 N -0.583 5.583 10 C 0.089 3.911 11 C -0.122 4.122 12 C -0.102 4.102 13 H 0.076 0.924 14 C -0.144 4.144 15 C 0.177 3.823 16 N -0.588 5.588 17 C -0.213 4.213 18 H 0.081 0.919 19 C -0.004 4.004 20 N -0.923 5.923 21 Si 0.896 3.104 22 H -0.291 1.291 23 H -0.292 1.292 24 H -0.274 1.274 25 C 0.153 3.847 26 H 0.027 0.973 27 C 0.115 3.885 28 C -0.193 4.193 29 C 0.132 3.868 30 N -0.533 5.533 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.152 0.848 37 H 0.068 0.932 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.061 0.939 41 H 0.058 0.942 42 H 0.054 0.946 43 H 0.046 0.954 44 H 0.039 0.961 45 H 0.249 0.751 46 H 0.097 0.903 47 H 0.057 0.943 48 H 0.151 0.849 49 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.829 -17.242 6.168 18.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.008 4.008 3 O -0.211 6.211 4 C 0.143 3.857 5 C -0.155 4.155 6 C -0.046 4.046 7 C 0.348 3.652 8 O -0.390 6.390 9 N -0.315 5.315 10 C -0.033 4.033 11 C -0.160 4.160 12 C -0.122 4.122 13 H 0.094 0.906 14 C -0.182 4.182 15 C 0.052 3.948 16 N -0.314 5.314 17 C -0.341 4.341 18 H 0.099 0.901 19 C -0.200 4.200 20 N -0.571 5.571 21 Si 0.726 3.274 22 H -0.219 1.219 23 H -0.219 1.219 24 H -0.199 1.199 25 C 0.045 3.955 26 H 0.044 0.956 27 C -0.008 4.008 28 C -0.213 4.213 29 C -0.023 4.023 30 N -0.258 5.258 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.170 0.830 37 H 0.086 0.914 38 H 0.112 0.888 39 H 0.099 0.901 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.064 0.936 44 H 0.057 0.943 45 H 0.059 0.941 46 H 0.115 0.885 47 H 0.076 0.924 48 H 0.169 0.831 49 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 3.679 -17.268 6.409 18.783 hybrid contribution -0.458 0.881 0.080 0.996 sum 3.221 -16.387 6.490 17.917 Atomic orbital electron populations 1.21829 0.93064 1.02755 1.03534 1.22595 0.94758 0.81073 1.02390 1.86278 1.16600 1.30596 1.87663 1.19589 0.84108 0.89423 0.92605 1.21163 0.94701 0.96448 1.03193 1.20227 0.93173 0.94481 0.96744 1.17898 0.80556 0.86851 0.79922 1.90810 1.60154 1.43349 1.44703 1.47612 1.21455 1.13743 1.48667 1.22404 0.97683 0.91135 0.92089 1.21918 1.02106 0.96552 0.95430 1.22383 0.97477 0.95095 0.97215 0.90609 1.23151 1.00337 0.99086 0.95614 1.21226 0.90095 0.98159 0.85298 1.44278 1.14381 1.71593 1.01105 1.18989 0.88873 1.33517 0.92751 0.90130 1.24703 0.97805 1.02089 0.95397 1.69972 1.29362 1.55530 1.02258 0.86304 0.84166 0.77865 0.79046 1.21901 1.21869 1.19891 1.20714 0.90631 0.93589 0.90574 0.95606 1.21445 0.96108 0.84616 0.98632 1.22394 1.01744 0.92489 1.04692 1.22312 0.88996 0.97025 0.93982 1.67166 1.06840 1.33244 1.18547 0.90364 0.91609 0.91504 0.91596 0.91684 0.83047 0.91421 0.88755 0.90077 0.92015 0.92344 0.92741 0.93559 0.94318 0.94070 0.88513 0.92441 0.83133 0.81913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 10.28 37.16 0.38 -0.93 16 2 C 0.07 0.73 6.03 37.16 0.22 0.95 16 3 O -0.30 -4.42 10.11 -18.76 -0.19 -4.61 16 4 C 0.32 4.88 7.49 -17.16 -0.13 4.75 16 5 C -0.13 -2.25 9.64 -38.84 -0.37 -2.62 16 6 C -0.04 -0.57 5.44 -104.68 -0.57 -1.14 16 7 C 0.56 10.74 7.47 -12.19 -0.09 10.64 16 8 O -0.51 -11.96 16.31 5.35 0.09 -11.88 16 9 N -0.58 -9.94 2.96 -174.79 -0.52 -10.46 16 10 C 0.09 1.17 4.95 -3.52 -0.02 1.15 16 11 C -0.12 -1.83 5.06 -26.51 -0.13 -1.96 16 12 C -0.10 -1.62 3.68 -88.43 -0.33 -1.95 16 13 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 14 C -0.14 -2.55 6.33 -24.33 -0.15 -2.70 16 15 C 0.18 4.18 4.63 -2.74 -0.01 4.17 16 16 N -0.59 -14.43 3.20 -164.41 -0.53 -14.96 16 17 C -0.21 -5.96 9.63 -15.06 -0.15 -6.11 16 18 H 0.08 2.31 6.62 -52.48 -0.35 1.96 16 19 C 0.00 -0.12 5.48 -17.43 -0.10 -0.22 16 20 N -0.92 -27.59 10.44 55.49 0.58 -27.01 16 21 Si 0.90 23.58 29.56 -169.99 -5.03 18.56 16 22 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 23 H -0.29 -7.74 7.11 56.52 0.40 -7.33 16 24 H -0.27 -7.32 7.11 56.52 0.40 -6.92 16 25 C 0.15 2.98 2.97 -68.30 -0.20 2.78 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 27 C 0.11 2.07 5.69 -4.78 -0.03 2.04 16 28 C -0.19 -2.27 7.50 -39.03 -0.29 -2.57 16 29 C 0.13 1.43 11.17 -17.61 -0.20 1.23 16 30 N -0.53 -7.10 9.18 -13.37 -0.12 -7.22 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 35 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 36 H 0.15 2.76 8.03 -52.49 -0.42 2.34 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.09 1.13 4.10 -51.93 -0.21 0.91 16 39 H 0.08 1.57 6.85 -51.93 -0.36 1.22 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.06 0.94 7.97 -51.93 -0.41 0.53 16 42 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.05 1.23 6.93 -51.93 -0.36 0.87 16 44 H 0.04 1.03 7.69 -51.93 -0.40 0.63 16 45 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 46 H 0.10 2.06 5.57 -51.93 -0.29 1.77 16 47 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.15 1.38 5.88 -52.49 -0.31 1.07 16 49 H 0.16 1.13 8.06 -52.48 -0.42 0.70 16 LS Contribution 382.02 15.07 5.76 5.76 Total: -1.00 -34.24 382.02 -9.43 -43.68 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -7.31 Total: 0.61 kcal Atomic # 6 Polarization: 9.70 SS G_CDS: -2.16 Total: 7.54 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: -0.59 Total: -59.65 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.10 Total: -16.49 kcal Atomic # 14 Polarization: 23.58 SS G_CDS: -5.03 Total: 18.56 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.24 -9.43 -43.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042234784.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.287 kcal (2) G-P(sol) polarization free energy of solvation -34.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds