Wall clock time and date at job start Wed Apr 1 2020 05:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.47079 * 2 1 4 4 C 1.35686 * 116.99990 * 179.97438 * 3 2 1 5 5 C 1.38898 * 119.62645 * 180.02562 * 4 3 2 6 6 C 1.39571 * 118.94700 * 180.02562 * 5 4 3 7 7 C 1.48166 * 120.89039 * 179.97438 * 6 5 4 8 8 O 1.21517 * 119.99704 * 32.89969 * 7 6 5 9 9 N 1.34770 * 120.00179 * 212.89433 * 7 6 5 10 10 C 1.47151 * 121.21400 * 5.30454 * 9 7 6 11 11 C 1.53329 * 107.71812 * 122.68800 * 10 9 7 12 12 C 1.53092 * 110.50417 * 57.57260 * 11 10 9 13 13 H 1.09001 * 113.06102 * 70.85967 * 12 11 10 14 14 C 1.56017 * 106.39813 * 195.29427 * 12 11 10 15 15 C 1.54499 * 102.61735 * 78.37960 * 14 12 11 16 16 N 1.47442 * 107.14561 * 22.84081 * 15 14 12 17 17 C 1.36934 * 126.05812 * 181.66393 * 16 15 14 18 18 H 1.08003 * 120.00027 * 186.13615 * 17 16 15 19 19 C 1.38810 * 120.00282 * 6.13759 * 17 16 15 20 20 N 1.31620 * 120.00061 * 351.96154 * 19 17 16 21 21 Si 1.86806 * 120.00201 * 171.96159 * 19 17 16 22 22 H 1.48503 * 109.46964 * 94.98069 * 21 19 17 23 23 H 1.48495 * 109.46962 * 214.98395 * 21 19 17 24 24 H 1.48502 * 109.46871 * 334.98602 * 21 19 17 25 25 C 1.46464 * 107.88009 * 1.62838 * 16 15 14 26 26 H 1.09004 * 108.41807 * 89.23535 * 25 16 15 27 27 C 1.46755 * 121.21404 * 185.58012 * 9 7 6 28 28 C 1.39962 * 118.21896 * 0.02562 * 6 5 4 29 29 C 1.37978 * 119.13225 * 0.27880 * 28 6 5 30 30 N 1.31911 * 120.97930 * 359.40338 * 29 28 6 31 31 H 1.09000 * 109.47264 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46859 * 300.00016 * 1 2 3 33 33 H 1.09003 * 109.46848 * 59.99492 * 1 2 3 34 34 H 1.09005 * 109.46830 * 240.00570 * 2 1 3 35 35 H 1.08991 * 109.47217 * 120.00654 * 2 1 3 36 36 H 1.07999 * 120.52510 * 0.02718 * 5 4 3 37 37 H 1.09004 * 109.75721 * 242.33792 * 10 9 7 38 38 H 1.09004 * 109.76268 * 3.09244 * 10 9 7 39 39 H 1.09003 * 109.39496 * 297.24543 * 11 10 9 40 40 H 1.09003 * 109.16169 * 177.74650 * 11 10 9 41 41 H 1.08993 * 110.78296 * 320.09577 * 14 12 11 42 42 H 1.09004 * 110.94225 * 196.73404 * 14 12 11 43 43 H 1.08999 * 109.90294 * 263.46443 * 15 14 12 44 44 H 1.08999 * 110.05975 * 142.30354 * 15 14 12 45 45 H 0.96998 * 120.00095 * 180.02562 * 20 19 17 46 46 H 1.08992 * 109.22886 * 352.83214 * 27 9 7 47 47 H 1.09001 * 109.22534 * 112.19830 * 27 9 7 48 48 H 1.08000 * 120.43260 * 179.97438 * 28 6 5 49 49 H 1.08008 * 119.51115 * 179.70042 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3515 1.5251 0.0005 5 6 3.8740 2.8120 0.0011 6 6 5.2597 2.9785 0.0011 7 6 5.8633 4.3316 0.0011 8 8 5.3039 5.2464 0.5728 9 7 7.0329 4.5478 -0.6327 10 6 7.6753 3.4905 -1.4294 11 6 7.8602 4.0267 -2.8539 12 6 8.6908 5.3126 -2.8392 13 1 9.7396 5.1407 -2.5973 14 6 8.4924 5.9811 -4.2349 15 6 7.1033 6.6434 -4.0974 16 7 6.8567 6.8413 -2.6573 17 6 5.7242 7.3710 -2.0988 18 1 5.6851 7.5638 -1.0368 19 6 4.6263 7.6601 -2.8975 20 7 4.7248 7.5758 -4.2073 21 14 3.0089 8.1690 -2.1134 22 1 2.9234 9.6510 -2.0724 23 1 1.8799 7.6298 -2.9132 24 1 2.9380 7.6307 -0.7312 25 6 8.0375 6.3701 -1.9300 26 1 8.7350 7.2017 -1.8300 27 6 7.7151 5.8444 -0.5487 28 6 6.0639 1.8329 0.0000 29 6 5.4634 0.5907 -0.0069 30 7 4.1497 0.4715 -0.0007 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5139 0.8898 36 1 3.2184 3.6702 0.0016 37 1 8.6447 3.2414 -0.9977 38 1 7.0404 2.6046 -1.4465 39 1 6.8839 4.2344 -3.2920 40 1 8.3717 3.2753 -3.4555 41 1 8.4866 5.2311 -5.0256 42 1 9.2615 6.7308 -4.4207 43 1 6.3381 5.9915 -4.5187 44 1 7.0951 7.6049 -4.6108 45 1 3.9578 7.7781 -4.7654 46 1 7.0698 6.5570 -0.0351 47 1 8.6402 5.7273 0.0157 48 1 7.1404 1.9202 -0.0005 49 1 6.0781 -0.2974 -0.0128 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042234784.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:57 Heat of formation + Delta-G solvation = -11.260686 kcal Electronic energy + Delta-G solvation = -31883.665165 eV Core-core repulsion = 27811.641563 eV Total energy + Delta-G solvation = -4072.023601 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.12410 -41.12930 -39.73586 -38.82854 -36.67265 -34.70668 -33.90451 -33.13165 -32.70338 -31.15387 -30.58029 -30.03498 -26.83111 -26.41896 -24.94662 -24.70664 -23.73069 -23.53310 -21.75306 -21.52614 -20.12293 -19.25744 -18.52742 -18.34867 -17.41192 -17.31320 -17.03537 -17.00494 -16.53546 -16.24903 -15.92850 -15.57190 -15.34285 -15.14273 -14.93253 -14.87925 -14.46700 -14.25969 -14.07004 -13.74677 -13.55577 -13.42558 -13.21834 -13.18070 -12.99492 -12.77919 -12.69569 -12.55692 -12.46253 -12.36111 -12.09956 -11.77143 -11.73736 -11.39993 -11.37007 -11.23938 -11.14895 -10.99385 -10.64529 -10.52807 -9.56097 -9.54269 -8.80821 -7.88652 -5.15359 -0.33731 0.03893 1.29466 1.32565 1.46001 1.57930 1.92461 2.15535 2.44614 2.70028 3.19741 3.30928 3.35734 3.58892 3.83086 3.87166 3.91461 3.95775 4.04597 4.06093 4.11971 4.16376 4.28239 4.42169 4.45795 4.51598 4.54771 4.62328 4.67066 4.67390 4.75598 4.79379 4.87826 4.90792 4.90813 4.98642 5.02698 5.14858 5.16286 5.17844 5.30644 5.34669 5.52331 5.65332 5.69496 5.73046 5.81641 6.16901 6.21982 6.43964 6.68671 7.12735 7.13712 7.82362 8.44953 9.22787 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010221 B = 0.004274 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2738.898840 B = 6549.870116 C = 8134.946737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 O -0.327 6.327 4 C 0.315 3.685 5 C -0.172 4.172 6 C -0.051 4.051 7 C 0.549 3.451 8 O -0.578 6.578 9 N -0.581 5.581 10 C 0.085 3.915 11 C -0.121 4.121 12 C -0.082 4.082 13 H 0.131 0.869 14 C -0.130 4.130 15 C 0.183 3.817 16 N -0.606 5.606 17 C -0.198 4.198 18 H 0.066 0.934 19 C -0.059 4.059 20 N -0.946 5.946 21 Si 0.941 3.059 22 H -0.283 1.283 23 H -0.294 1.294 24 H -0.288 1.288 25 C 0.139 3.861 26 H 0.031 0.969 27 C 0.117 3.883 28 C -0.174 4.174 29 C 0.149 3.851 30 N -0.531 5.531 31 H 0.107 0.893 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.113 0.887 37 H 0.124 0.876 38 H 0.109 0.891 39 H 0.025 0.975 40 H 0.106 0.894 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.005 0.995 44 H -0.005 1.005 45 H 0.242 0.758 46 H 0.050 0.950 47 H 0.107 0.893 48 H 0.191 0.809 49 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.933 -21.550 6.631 24.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.235 6.235 4 C 0.138 3.862 5 C -0.194 4.194 6 C -0.061 4.061 7 C 0.337 3.663 8 O -0.458 6.458 9 N -0.311 5.311 10 C -0.035 4.035 11 C -0.159 4.159 12 C -0.101 4.101 13 H 0.148 0.852 14 C -0.168 4.168 15 C 0.059 3.941 16 N -0.331 5.331 17 C -0.328 4.328 18 H 0.083 0.917 19 C -0.252 4.252 20 N -0.597 5.597 21 Si 0.772 3.228 22 H -0.210 1.210 23 H -0.220 1.220 24 H -0.214 1.214 25 C 0.032 3.968 26 H 0.048 0.952 27 C -0.007 4.007 28 C -0.193 4.193 29 C -0.006 4.006 30 N -0.256 5.256 31 H 0.125 0.875 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.131 0.869 37 H 0.142 0.858 38 H 0.126 0.874 39 H 0.044 0.956 40 H 0.124 0.876 41 H 0.099 0.901 42 H 0.088 0.912 43 H 0.024 0.976 44 H 0.013 0.987 45 H 0.051 0.949 46 H 0.069 0.931 47 H 0.125 0.875 48 H 0.208 0.792 49 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 7.823 -21.601 6.866 23.978 hybrid contribution -1.646 2.179 -0.029 2.731 sum 6.177 -19.422 6.838 21.497 Atomic orbital electron populations 1.21869 0.91509 1.04448 1.02968 1.22872 0.96021 0.79516 1.02874 1.86259 1.16691 1.32968 1.87613 1.19498 0.84655 0.89112 0.92969 1.21000 0.95287 0.96383 1.06745 1.20107 0.93092 0.94380 0.98567 1.18516 0.80760 0.87612 0.79395 1.90768 1.61870 1.45556 1.47577 1.47804 1.20793 1.14356 1.48161 1.22837 1.00183 0.89999 0.90492 1.21909 0.99538 0.97370 0.97085 1.22458 1.00001 0.93783 0.93882 0.85157 1.23018 0.96075 0.99707 0.97981 1.20989 0.93176 0.95670 0.84306 1.44470 1.14836 1.71449 1.02350 1.19024 0.90191 1.31614 0.91963 0.91654 1.25222 1.00038 1.03995 0.95918 1.70139 1.29235 1.57563 1.02779 0.85579 0.81987 0.77809 0.77399 1.21044 1.22042 1.21406 1.21083 0.88666 0.95222 0.91817 0.95189 1.21373 0.97099 0.84493 0.97687 1.22776 1.03140 0.90938 1.02477 1.23287 0.88337 0.98482 0.90527 1.67326 1.08024 1.31949 1.18316 0.87456 0.91934 0.92317 0.91230 0.90873 0.86900 0.85815 0.87378 0.95626 0.87597 0.90118 0.91242 0.97623 0.98715 0.94889 0.93116 0.87533 0.79172 0.76364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 10.28 71.98 0.74 -1.74 16 2 C 0.06 1.30 6.03 71.98 0.43 1.74 16 3 O -0.33 -9.94 10.11 -90.04 -0.91 -10.85 16 4 C 0.32 9.75 7.49 84.80 0.63 10.39 16 5 C -0.17 -6.22 9.64 22.75 0.22 -6.00 16 6 C -0.05 -1.63 5.44 -19.90 -0.11 -1.74 16 7 C 0.55 21.58 7.47 86.88 0.65 22.23 16 8 O -0.58 -29.05 16.31 -3.77 -0.06 -29.11 16 9 N -0.58 -18.82 2.96 -825.21 -2.44 -21.27 16 10 C 0.09 1.78 4.95 86.37 0.43 2.21 16 11 C -0.12 -3.09 5.06 30.74 0.16 -2.94 16 12 C -0.08 -2.22 3.68 -9.38 -0.03 -2.26 16 13 H 0.13 2.34 8.14 -2.39 -0.02 2.32 16 14 C -0.13 -4.26 6.33 32.15 0.20 -4.06 16 15 C 0.18 8.99 4.63 86.71 0.40 9.39 16 16 N -0.61 -30.74 3.20 -674.08 -2.15 -32.89 16 17 C -0.20 -11.76 9.63 84.03 0.81 -10.95 16 18 H 0.07 4.03 6.62 -2.91 -0.02 4.01 16 19 C -0.06 -3.65 5.48 84.86 0.46 -3.19 16 20 N -0.95 -60.22 10.44 21.65 0.23 -59.99 16 21 Si 0.94 51.98 29.56 68.60 2.03 54.01 16 22 H -0.28 -15.09 7.11 99.48 0.71 -14.38 16 23 H -0.29 -16.13 7.11 99.48 0.71 -15.42 16 24 H -0.29 -16.39 7.11 99.48 0.71 -15.68 16 25 C 0.14 5.17 2.97 44.77 0.13 5.31 16 26 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 27 C 0.12 4.05 5.69 85.76 0.49 4.53 16 28 C -0.17 -3.39 7.50 22.63 0.17 -3.22 16 29 C 0.15 2.51 11.17 84.62 0.94 3.46 16 30 N -0.53 -12.86 9.18 -309.12 -2.84 -15.70 16 31 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.07 1.39 8.10 -2.38 -0.02 1.38 16 35 H 0.07 1.40 8.10 -2.39 -0.02 1.38 16 36 H 0.11 4.79 8.03 -2.91 -0.02 4.77 16 37 H 0.12 1.39 8.14 -2.38 -0.02 1.37 16 38 H 0.11 1.99 4.10 -2.39 -0.01 1.98 16 39 H 0.02 0.95 6.85 -2.39 -0.02 0.93 16 40 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.08 2.33 7.97 -2.39 -0.02 2.31 16 42 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 43 H 0.01 0.31 6.93 -2.39 -0.02 0.29 16 44 H -0.01 -0.31 7.69 -2.39 -0.02 -0.32 16 45 H 0.24 15.13 8.31 -92.71 -0.77 14.36 16 46 H 0.05 2.25 5.57 -2.39 -0.01 2.23 16 47 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 48 H 0.19 2.16 5.88 -2.91 -0.02 2.14 16 49 H 0.22 1.30 8.06 -2.91 -0.02 1.28 16 Total: -1.00 -88.37 382.02 1.54 -86.84 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: 0.96 Total: 5.81 kcal Atomic # 6 Polarization: 16.43 SS G_CDS: 6.73 Total: 23.16 kcal Atomic # 7 Polarization: -122.64 SS G_CDS: -7.21 Total: -129.85 kcal Atomic # 8 Polarization: -38.99 SS G_CDS: -0.97 Total: -39.96 kcal Atomic # 14 Polarization: 51.98 SS G_CDS: 2.03 Total: 54.01 kcal Total: -88.37 1.54 -86.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042234784.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.577 kcal (2) G-P(sol) polarization free energy of solvation -88.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds