Wall clock time and date at job start Wed Apr 1 2020 05:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42903 * 109.47671 * 2 1 4 4 C 1.35676 * 117.00380 * 180.02562 * 3 2 1 5 5 C 1.38892 * 119.62695 * 180.27580 * 4 3 2 6 6 C 1.39574 * 118.95017 * 180.22458 * 5 4 3 7 7 C 1.48165 * 120.89227 * 179.77954 * 6 5 4 8 8 O 1.21507 * 119.99917 * 48.15567 * 7 6 5 9 9 N 1.34776 * 120.00005 * 228.15478 * 7 6 5 10 10 C 1.46598 * 119.75233 * 356.26743 * 9 7 6 11 11 C 1.53888 * 110.67987 * 132.28250 * 10 9 7 12 12 C 1.51915 * 107.33742 * 51.81192 * 11 10 9 13 13 H 1.09008 * 111.55301 * 56.85250 * 12 11 10 14 14 C 1.53692 * 115.02021 * 184.56415 * 12 11 10 15 15 C 1.55299 * 101.81671 * 153.45722 * 14 12 11 16 16 N 1.48156 * 107.04085 * 337.56055 * 15 14 12 17 17 C 1.36939 * 126.39540 * 175.03350 * 16 15 14 18 18 H 1.08001 * 119.99406 * 179.97438 * 17 16 15 19 19 C 1.38813 * 120.00233 * 359.95163 * 17 16 15 20 20 N 1.31612 * 119.99828 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99947 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47068 * 89.99829 * 21 19 17 23 23 H 1.48499 * 109.47036 * 210.00180 * 21 19 17 24 24 H 1.48500 * 109.46823 * 329.99966 * 21 19 17 25 25 C 1.45501 * 107.20327 * 354.99304 * 16 15 14 26 26 H 1.08998 * 109.56802 * 274.15307 * 25 16 15 27 27 C 1.47789 * 119.75760 * 176.29664 * 9 7 6 28 28 C 1.39967 * 118.21484 * 359.50582 * 6 5 4 29 29 C 1.37974 * 119.13366 * 0.24920 * 28 6 5 30 30 N 1.31911 * 120.97840 * 359.97438 * 29 28 6 31 31 H 1.08996 * 109.47518 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46960 * 300.00488 * 1 2 3 33 33 H 1.08995 * 109.47110 * 59.99922 * 1 2 3 34 34 H 1.09003 * 109.47216 * 239.99994 * 2 1 3 35 35 H 1.09004 * 109.47219 * 119.99858 * 2 1 3 36 36 H 1.08001 * 120.52343 * 0.02562 * 5 4 3 37 37 H 1.09002 * 109.22929 * 252.57535 * 10 9 7 38 38 H 1.08996 * 109.23306 * 11.98228 * 10 9 7 39 39 H 1.08996 * 109.89405 * 171.23459 * 11 10 9 40 40 H 1.09005 * 109.89142 * 292.34212 * 11 10 9 41 41 H 1.09001 * 110.96240 * 35.32884 * 14 12 11 42 42 H 1.08998 * 110.99476 * 271.60192 * 14 12 11 43 43 H 1.08997 * 109.92339 * 218.20577 * 15 14 12 44 44 H 1.09002 * 110.08607 * 96.99411 * 15 14 12 45 45 H 0.97001 * 120.00041 * 179.97438 * 20 19 17 46 46 H 1.09004 * 110.06601 * 350.47101 * 27 9 7 47 47 H 1.08997 * 110.06804 * 112.03230 * 27 9 7 48 48 H 1.07998 * 120.43327 * 180.27072 * 28 6 5 49 49 H 1.08004 * 119.51219 * 179.97438 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3515 1.5250 -0.0005 5 6 3.8740 2.8118 0.0052 6 6 5.2598 2.9783 -0.0002 7 6 5.8634 4.3315 0.0008 8 8 5.4731 5.1703 0.7885 9 7 6.8454 4.6319 -0.8721 10 6 7.3688 3.5930 -1.7642 11 6 7.4485 4.1091 -3.2117 12 6 8.2081 5.4244 -3.1822 13 1 9.1948 5.3070 -2.7340 14 6 8.2964 6.1545 -4.5317 15 6 8.4517 7.6333 -4.0837 16 7 7.9081 7.7299 -2.7089 17 6 7.9347 8.8348 -1.9003 18 1 7.5050 8.7899 -0.9105 19 6 8.5142 10.0122 -2.3528 20 7 9.0377 10.0668 -3.5591 21 14 8.5511 11.5192 -1.2495 22 1 9.7957 11.5095 -0.4398 23 1 8.5140 12.7458 -2.0857 24 1 7.3726 11.5001 -0.3462 25 6 7.3399 6.4318 -2.3786 26 1 6.3133 6.3797 -2.7411 27 6 7.3869 6.0061 -0.9225 28 6 6.0639 1.8327 -0.0006 29 6 5.4634 0.5905 -0.0010 30 7 4.1497 0.4715 -0.0004 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.2184 3.6701 0.0106 37 1 8.3653 3.3027 -1.4313 38 1 6.7113 2.7244 -1.7284 39 1 7.9799 3.3888 -3.8336 40 1 6.4442 4.2696 -3.6040 41 1 7.3830 6.0163 -5.1103 42 1 9.1677 5.8250 -5.0977 43 1 7.8892 8.2850 -4.7522 44 1 9.5042 7.9171 -4.0876 45 1 9.4424 10.8896 -3.8754 46 1 6.7720 6.6728 -0.3179 47 1 8.4158 6.0160 -0.5630 48 1 7.1404 1.9200 -0.0004 49 1 6.0781 -0.2975 -0.0018 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042234785.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:03 Heat of formation + Delta-G solvation = 4.213449 kcal Electronic energy + Delta-G solvation = -30646.150872 eV Core-core repulsion = 26574.798280 eV Total energy + Delta-G solvation = -4071.352593 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.21122 -40.06132 -38.53847 -37.89041 -35.51540 -33.10041 -32.83086 -32.42415 -31.26924 -30.28798 -29.40415 -28.48643 -25.61343 -24.69346 -23.80066 -23.68424 -22.59323 -22.25946 -20.41219 -20.02134 -19.43650 -18.25958 -17.46127 -16.65155 -16.62400 -16.34707 -16.19457 -15.74490 -15.13621 -14.88185 -14.43544 -14.39700 -14.25411 -14.16313 -13.95013 -13.63567 -13.22877 -13.10079 -12.94858 -12.84925 -12.62357 -12.29308 -12.20815 -11.93688 -11.84817 -11.57587 -11.35204 -11.09491 -10.95919 -10.83920 -10.76028 -10.40904 -10.18860 -10.13010 -9.99498 -9.90173 -9.69342 -9.63242 -9.48863 -8.78774 -8.64240 -8.53850 -6.87489 -5.73114 -3.07120 0.60552 0.83915 2.46457 2.77956 3.02246 3.41258 3.47089 3.47524 3.49213 3.95237 4.21524 4.49757 4.62338 4.67139 4.69293 4.74256 4.79304 4.88389 4.94270 5.03090 5.09124 5.30123 5.35538 5.38911 5.43491 5.47537 5.48634 5.58864 5.64824 5.69142 5.74008 5.79222 5.86167 5.96465 6.00562 6.05272 6.08431 6.13880 6.32147 6.42839 6.52868 6.64629 6.70806 6.93969 7.01366 7.40020 7.49015 7.53792 7.58990 7.80111 8.10367 8.21953 9.17657 9.80567 10.46843 11.39131 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017130 B = 0.002512 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.134001 B =11144.315595 C =11788.483072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.067 3.933 3 O -0.305 6.305 4 C 0.325 3.675 5 C -0.142 4.142 6 C -0.036 4.036 7 C 0.554 3.446 8 O -0.525 6.525 9 N -0.594 5.594 10 C 0.097 3.903 11 C -0.119 4.119 12 C -0.114 4.114 13 H 0.078 0.922 14 C -0.138 4.138 15 C 0.177 3.823 16 N -0.591 5.591 17 C -0.229 4.229 18 H 0.080 0.920 19 C -0.006 4.006 20 N -0.921 5.921 21 Si 0.910 3.090 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.280 1.280 25 C 0.156 3.844 26 H 0.024 0.976 27 C 0.117 3.883 28 C -0.186 4.186 29 C 0.138 3.862 30 N -0.533 5.533 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.150 0.850 37 H 0.069 0.931 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.056 0.944 42 H 0.059 0.941 43 H 0.038 0.962 44 H 0.057 0.943 45 H 0.252 0.748 46 H 0.094 0.906 47 H 0.075 0.925 48 H 0.146 0.854 49 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.942 -23.846 2.998 25.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.008 4.008 3 O -0.212 6.212 4 C 0.145 3.855 5 C -0.164 4.164 6 C -0.047 4.047 7 C 0.340 3.660 8 O -0.401 6.401 9 N -0.326 5.326 10 C -0.026 4.026 11 C -0.158 4.158 12 C -0.134 4.134 13 H 0.096 0.904 14 C -0.176 4.176 15 C 0.052 3.948 16 N -0.316 5.316 17 C -0.357 4.357 18 H 0.098 0.902 19 C -0.202 4.202 20 N -0.568 5.568 21 Si 0.740 3.260 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.206 1.206 25 C 0.047 3.953 26 H 0.041 0.959 27 C -0.005 4.005 28 C -0.207 4.207 29 C -0.017 4.017 30 N -0.257 5.257 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.167 0.833 37 H 0.088 0.912 38 H 0.105 0.895 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.056 0.944 44 H 0.075 0.925 45 H 0.063 0.937 46 H 0.112 0.888 47 H 0.093 0.907 48 H 0.164 0.836 49 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -8.667 -23.744 3.396 25.503 hybrid contribution 0.554 1.401 0.442 1.570 sum -8.113 -22.343 3.837 24.078 Atomic orbital electron populations 1.21830 0.92944 1.02905 1.03497 1.22624 0.94817 0.80879 1.02529 1.86261 1.16501 1.30833 1.87587 1.19580 0.84205 0.89387 0.92286 1.21049 0.94290 0.96468 1.04560 1.20160 0.93282 0.94369 0.96915 1.18184 0.79742 0.86516 0.81539 1.90823 1.61736 1.48758 1.38799 1.48204 1.36250 1.12134 1.36037 1.22106 0.99566 0.90332 0.90584 1.21794 1.01231 0.97843 0.94929 1.22276 0.99120 0.93714 0.98253 0.90368 1.22722 1.00334 0.98940 0.95608 1.21557 0.99238 0.89098 0.84871 1.44167 1.67878 1.05987 1.13606 1.19045 1.32498 0.87980 0.96219 0.90245 1.24785 1.00611 0.97952 0.96870 1.69939 1.43565 1.26576 1.16765 0.86140 0.77858 0.82515 0.79444 1.21561 1.21684 1.20557 1.20989 0.95466 0.87094 0.91786 0.95865 1.21807 0.99320 0.79817 0.99507 1.22220 1.01644 0.92314 1.04530 1.22352 0.88949 0.97099 0.93297 1.67202 1.06835 1.33212 1.18463 0.90259 0.91573 0.91535 0.91515 0.91571 0.83269 0.91239 0.89512 0.90720 0.91389 0.92565 0.92186 0.94425 0.92527 0.93739 0.88805 0.90721 0.83582 0.81687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 10.28 37.15 0.38 -0.56 16 2 C 0.07 0.55 6.03 37.15 0.22 0.78 16 3 O -0.30 -3.45 10.11 -18.73 -0.19 -3.64 16 4 C 0.32 3.86 7.49 -17.16 -0.13 3.73 16 5 C -0.14 -1.81 9.77 -38.84 -0.38 -2.19 16 6 C -0.04 -0.46 5.01 -104.67 -0.52 -0.98 16 7 C 0.55 8.78 7.30 -12.18 -0.09 8.69 16 8 O -0.52 -10.38 16.42 5.36 0.09 -10.30 16 9 N -0.59 -8.93 3.01 -173.74 -0.52 -9.46 16 10 C 0.10 1.09 5.07 -3.53 -0.02 1.07 16 11 C -0.12 -1.47 5.71 -26.82 -0.15 -1.63 16 12 C -0.11 -1.86 2.61 -89.55 -0.23 -2.09 16 13 H 0.08 1.31 8.13 -51.92 -0.42 0.88 16 14 C -0.14 -2.44 6.54 -25.15 -0.16 -2.61 16 15 C 0.18 4.17 5.46 -1.91 -0.01 4.16 16 16 N -0.59 -14.70 3.35 -162.91 -0.55 -15.25 16 17 C -0.23 -6.30 9.88 -15.06 -0.15 -6.45 16 18 H 0.08 2.14 7.41 -52.49 -0.39 1.75 16 19 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 20 N -0.92 -26.79 10.43 55.49 0.58 -26.22 16 21 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 C 0.16 3.13 2.77 -67.83 -0.19 2.95 16 26 H 0.02 0.52 7.90 -51.93 -0.41 0.10 16 27 C 0.12 2.17 5.68 -3.95 -0.02 2.15 16 28 C -0.19 -1.75 7.46 -39.03 -0.29 -2.04 16 29 C 0.14 1.18 11.17 -17.61 -0.20 0.98 16 30 N -0.53 -5.69 9.18 -13.38 -0.12 -5.81 16 31 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 35 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 36 H 0.15 1.93 8.06 -52.49 -0.42 1.51 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 0.82 4.60 -51.93 -0.24 0.58 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.89 7.97 -51.93 -0.41 0.48 16 41 H 0.06 0.95 8.12 -51.93 -0.42 0.53 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.04 0.98 7.77 -51.93 -0.40 0.58 16 44 H 0.06 1.48 7.19 -51.93 -0.37 1.10 16 45 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 46 H 0.09 1.97 6.78 -51.93 -0.35 1.62 16 47 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 48 H 0.15 1.07 6.94 -52.49 -0.36 0.71 16 49 H 0.17 0.82 8.06 -52.48 -0.42 0.40 16 LS Contribution 387.54 15.07 5.84 5.84 Total: -1.00 -32.89 387.54 -9.51 -42.40 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -7.57 Total: -0.51 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: -2.04 Total: 5.71 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: -0.61 Total: -56.73 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.10 Total: -13.94 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.89 -9.51 -42.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042234785.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.610 kcal (2) G-P(sol) polarization free energy of solvation -32.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds