Wall clock time and date at job start Wed Apr 1 2020 05:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42903 * 109.47671 * 2 1 4 4 C 1.35676 * 117.00380 * 180.02562 * 3 2 1 5 5 C 1.38892 * 119.62695 * 180.27580 * 4 3 2 6 6 C 1.39574 * 118.95017 * 180.22458 * 5 4 3 7 7 C 1.48165 * 120.89227 * 179.77954 * 6 5 4 8 8 O 1.21507 * 119.99917 * 48.15567 * 7 6 5 9 9 N 1.34776 * 120.00005 * 228.15478 * 7 6 5 10 10 C 1.46598 * 119.75233 * 356.26743 * 9 7 6 11 11 C 1.53888 * 110.67987 * 132.28250 * 10 9 7 12 12 C 1.51915 * 107.33742 * 51.81192 * 11 10 9 13 13 H 1.09008 * 111.55301 * 56.85250 * 12 11 10 14 14 C 1.53692 * 115.02021 * 184.56415 * 12 11 10 15 15 C 1.55299 * 101.81671 * 153.45722 * 14 12 11 16 16 N 1.48156 * 107.04085 * 337.56055 * 15 14 12 17 17 C 1.36939 * 126.39540 * 175.03350 * 16 15 14 18 18 H 1.08001 * 119.99406 * 179.97438 * 17 16 15 19 19 C 1.38813 * 120.00233 * 359.95163 * 17 16 15 20 20 N 1.31612 * 119.99828 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99947 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47068 * 89.99829 * 21 19 17 23 23 H 1.48499 * 109.47036 * 210.00180 * 21 19 17 24 24 H 1.48500 * 109.46823 * 329.99966 * 21 19 17 25 25 C 1.45501 * 107.20327 * 354.99304 * 16 15 14 26 26 H 1.08998 * 109.56802 * 274.15307 * 25 16 15 27 27 C 1.47789 * 119.75760 * 176.29664 * 9 7 6 28 28 C 1.39967 * 118.21484 * 359.50582 * 6 5 4 29 29 C 1.37974 * 119.13366 * 0.24920 * 28 6 5 30 30 N 1.31911 * 120.97840 * 359.97438 * 29 28 6 31 31 H 1.08996 * 109.47518 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46960 * 300.00488 * 1 2 3 33 33 H 1.08995 * 109.47110 * 59.99922 * 1 2 3 34 34 H 1.09003 * 109.47216 * 239.99994 * 2 1 3 35 35 H 1.09004 * 109.47219 * 119.99858 * 2 1 3 36 36 H 1.08001 * 120.52343 * 0.02562 * 5 4 3 37 37 H 1.09002 * 109.22929 * 252.57535 * 10 9 7 38 38 H 1.08996 * 109.23306 * 11.98228 * 10 9 7 39 39 H 1.08996 * 109.89405 * 171.23459 * 11 10 9 40 40 H 1.09005 * 109.89142 * 292.34212 * 11 10 9 41 41 H 1.09001 * 110.96240 * 35.32884 * 14 12 11 42 42 H 1.08998 * 110.99476 * 271.60192 * 14 12 11 43 43 H 1.08997 * 109.92339 * 218.20577 * 15 14 12 44 44 H 1.09002 * 110.08607 * 96.99411 * 15 14 12 45 45 H 0.97001 * 120.00041 * 179.97438 * 20 19 17 46 46 H 1.09004 * 110.06601 * 350.47101 * 27 9 7 47 47 H 1.08997 * 110.06804 * 112.03230 * 27 9 7 48 48 H 1.07998 * 120.43327 * 180.27072 * 28 6 5 49 49 H 1.08004 * 119.51219 * 179.97438 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3515 1.5250 -0.0005 5 6 3.8740 2.8118 0.0052 6 6 5.2598 2.9783 -0.0002 7 6 5.8634 4.3315 0.0008 8 8 5.4731 5.1703 0.7885 9 7 6.8454 4.6319 -0.8721 10 6 7.3688 3.5930 -1.7642 11 6 7.4485 4.1091 -3.2117 12 6 8.2081 5.4244 -3.1822 13 1 9.1948 5.3070 -2.7340 14 6 8.2964 6.1545 -4.5317 15 6 8.4517 7.6333 -4.0837 16 7 7.9081 7.7299 -2.7089 17 6 7.9347 8.8348 -1.9003 18 1 7.5050 8.7899 -0.9105 19 6 8.5142 10.0122 -2.3528 20 7 9.0377 10.0668 -3.5591 21 14 8.5511 11.5192 -1.2495 22 1 9.7957 11.5095 -0.4398 23 1 8.5140 12.7458 -2.0857 24 1 7.3726 11.5001 -0.3462 25 6 7.3399 6.4318 -2.3786 26 1 6.3133 6.3797 -2.7411 27 6 7.3869 6.0061 -0.9225 28 6 6.0639 1.8327 -0.0006 29 6 5.4634 0.5905 -0.0010 30 7 4.1497 0.4715 -0.0004 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.2184 3.6701 0.0106 37 1 8.3653 3.3027 -1.4313 38 1 6.7113 2.7244 -1.7284 39 1 7.9799 3.3888 -3.8336 40 1 6.4442 4.2696 -3.6040 41 1 7.3830 6.0163 -5.1103 42 1 9.1677 5.8250 -5.0977 43 1 7.8892 8.2850 -4.7522 44 1 9.5042 7.9171 -4.0876 45 1 9.4424 10.8896 -3.8754 46 1 6.7720 6.6728 -0.3179 47 1 8.4158 6.0160 -0.5630 48 1 7.1404 1.9200 -0.0004 49 1 6.0781 -0.2975 -0.0018 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042234785.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:01 Heat of formation + Delta-G solvation = -18.237618 kcal Electronic energy + Delta-G solvation = -30647.124424 eV Core-core repulsion = 26574.798280 eV Total energy + Delta-G solvation = -4072.326144 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.18138 -41.19202 -39.84104 -38.85806 -36.97902 -34.74685 -33.89721 -33.08813 -32.86190 -31.15902 -30.78967 -30.09699 -26.76160 -26.48565 -24.88859 -24.53228 -23.55277 -23.44661 -21.82403 -21.53186 -20.71972 -19.32291 -18.60034 -18.31278 -17.49217 -17.26087 -17.17012 -16.94079 -16.78174 -16.22249 -15.85288 -15.70280 -15.33011 -15.20136 -14.92308 -14.81632 -14.65339 -14.43194 -14.03228 -13.84649 -13.62494 -13.45545 -13.32222 -13.15988 -13.09131 -12.98831 -12.76478 -12.54648 -12.45937 -12.15689 -12.02341 -11.80309 -11.72525 -11.55765 -11.50501 -11.38797 -11.08200 -10.95901 -10.74310 -10.61695 -9.81744 -9.56530 -8.92771 -7.88195 -5.23111 -0.30295 0.05709 1.35849 1.42832 1.43846 1.52822 1.73185 2.05921 2.47493 2.64447 3.13633 3.30030 3.31143 3.48980 3.74912 3.84198 3.90991 3.94255 3.97094 4.08102 4.10690 4.17797 4.24433 4.28774 4.29124 4.46998 4.52697 4.56880 4.60367 4.64644 4.72845 4.79929 4.83583 4.87726 4.90460 4.95787 4.99111 5.09993 5.14283 5.19008 5.22002 5.31430 5.35459 5.47360 5.57638 5.65591 5.77753 6.17390 6.18308 6.22492 6.71506 6.88065 7.06456 7.74633 8.41341 9.22613 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017130 B = 0.002512 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.134001 B =11144.315595 C =11788.483072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 O -0.322 6.322 4 C 0.318 3.682 5 C -0.165 4.165 6 C -0.046 4.046 7 C 0.551 3.449 8 O -0.578 6.578 9 N -0.589 5.589 10 C 0.091 3.909 11 C -0.111 4.111 12 C -0.095 4.095 13 H 0.082 0.918 14 C -0.122 4.122 15 C 0.179 3.821 16 N -0.612 5.612 17 C -0.238 4.238 18 H 0.075 0.925 19 C -0.061 4.061 20 N -0.947 5.947 21 Si 0.971 3.029 22 H -0.282 1.282 23 H -0.292 1.292 24 H -0.276 1.276 25 C 0.146 3.854 26 H 0.005 0.995 27 C 0.130 3.870 28 C -0.173 4.173 29 C 0.153 3.847 30 N -0.535 5.535 31 H 0.103 0.897 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.130 0.870 37 H 0.101 0.899 38 H 0.114 0.886 39 H 0.118 0.882 40 H 0.060 0.940 41 H 0.067 0.933 42 H 0.088 0.912 43 H -0.003 1.003 44 H 0.025 0.975 45 H 0.247 0.753 46 H 0.056 0.944 47 H 0.076 0.924 48 H 0.177 0.823 49 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.045 -28.298 2.924 29.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.230 6.230 4 C 0.140 3.860 5 C -0.187 4.187 6 C -0.057 4.057 7 C 0.340 3.660 8 O -0.458 6.458 9 N -0.321 5.321 10 C -0.030 4.030 11 C -0.150 4.150 12 C -0.115 4.115 13 H 0.101 0.899 14 C -0.160 4.160 15 C 0.055 3.945 16 N -0.338 5.338 17 C -0.367 4.367 18 H 0.093 0.907 19 C -0.255 4.255 20 N -0.596 5.596 21 Si 0.800 3.200 22 H -0.209 1.209 23 H -0.218 1.218 24 H -0.202 1.202 25 C 0.038 3.962 26 H 0.022 0.978 27 C 0.007 3.993 28 C -0.193 4.193 29 C -0.003 4.003 30 N -0.259 5.259 31 H 0.121 0.879 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.148 0.852 37 H 0.119 0.881 38 H 0.132 0.868 39 H 0.136 0.864 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.107 0.893 43 H 0.016 0.984 44 H 0.044 0.956 45 H 0.057 0.943 46 H 0.075 0.925 47 H 0.094 0.906 48 H 0.194 0.806 49 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -7.788 -28.258 3.309 29.497 hybrid contribution 0.226 2.729 0.468 2.778 sum -7.561 -25.529 3.777 26.892 Atomic orbital electron populations 1.21859 0.91505 1.04328 1.03110 1.22849 0.95976 0.79607 1.02797 1.86249 1.16518 1.32722 1.87519 1.19553 0.84662 0.89223 0.92609 1.20959 0.94524 0.96650 1.06534 1.19892 0.93391 0.93387 0.99038 1.18737 0.79173 0.87466 0.80658 1.90790 1.63237 1.50773 1.41037 1.48234 1.35970 1.11348 1.36519 1.22503 1.01741 0.89625 0.89094 1.21804 1.00615 0.96147 0.96385 1.22213 0.98907 0.94522 0.95861 0.89927 1.22598 1.02173 0.94462 0.96787 1.21384 0.96445 0.92754 0.83944 1.44430 1.67991 1.07294 1.14041 1.19303 1.31660 0.89306 0.96392 0.90732 1.25548 1.01072 1.00582 0.98262 1.70141 1.44573 1.26755 1.18139 0.85187 0.77954 0.79106 0.77790 1.20868 1.21843 1.20178 1.21137 0.95029 0.86448 0.93605 0.97786 1.21370 0.98667 0.81653 0.97648 1.22533 1.02746 0.91176 1.02873 1.23144 0.88367 0.98264 0.90508 1.67331 1.07873 1.32440 1.18271 0.87886 0.91995 0.91879 0.91070 0.91324 0.85197 0.88060 0.86800 0.86385 0.92160 0.91474 0.89315 0.98428 0.95644 0.94326 0.92495 0.90610 0.80589 0.77050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 10.28 71.98 0.74 -0.90 16 2 C 0.06 0.94 6.03 71.98 0.43 1.38 16 3 O -0.32 -7.19 10.11 -89.94 -0.91 -8.10 16 4 C 0.32 7.22 7.49 84.80 0.63 7.86 16 5 C -0.16 -4.23 9.77 22.75 0.22 -4.00 16 6 C -0.05 -1.10 5.01 -19.90 -0.10 -1.20 16 7 C 0.55 17.51 7.30 86.88 0.63 18.14 16 8 O -0.58 -24.15 16.42 -3.74 -0.06 -24.21 16 9 N -0.59 -17.06 3.01 -821.88 -2.47 -19.53 16 10 C 0.09 1.65 5.07 86.66 0.44 2.09 16 11 C -0.11 -2.26 5.71 30.54 0.17 -2.08 16 12 C -0.10 -2.90 2.61 -10.10 -0.03 -2.92 16 13 H 0.08 2.50 8.13 -2.38 -0.02 2.48 16 14 C -0.12 -4.14 6.54 31.62 0.21 -3.94 16 15 C 0.18 8.77 5.46 86.85 0.47 9.24 16 16 N -0.61 -31.68 3.35 -669.33 -2.24 -33.92 16 17 C -0.24 -13.64 9.88 84.03 0.83 -12.81 16 18 H 0.07 4.23 7.41 -2.91 -0.02 4.21 16 19 C -0.06 -3.57 5.49 84.86 0.47 -3.10 16 20 N -0.95 -57.50 10.43 21.65 0.23 -57.27 16 21 Si 0.97 47.33 29.55 68.60 2.03 49.35 16 22 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 23 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 24 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 25 C 0.15 5.96 2.77 45.59 0.13 6.09 16 26 H 0.00 0.21 7.90 -2.39 -0.02 0.19 16 27 C 0.13 4.92 5.68 85.73 0.49 5.41 16 28 C -0.17 -2.50 7.46 22.63 0.17 -2.33 16 29 C 0.15 1.84 11.17 84.62 0.94 2.78 16 30 N -0.53 -9.73 9.18 -309.15 -2.84 -12.57 16 31 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 33 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.07 1.00 8.10 -2.39 -0.02 0.98 16 35 H 0.07 0.99 8.10 -2.38 -0.02 0.97 16 36 H 0.13 3.69 8.06 -2.91 -0.02 3.66 16 37 H 0.10 1.32 8.14 -2.39 -0.02 1.31 16 38 H 0.11 1.54 4.60 -2.39 -0.01 1.53 16 39 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.06 1.37 7.97 -2.38 -0.02 1.35 16 41 H 0.07 2.14 8.12 -2.39 -0.02 2.12 16 42 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 43 H 0.00 -0.14 7.77 -2.39 -0.02 -0.16 16 44 H 0.03 1.38 7.19 -2.39 -0.02 1.36 16 45 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 46 H 0.06 2.56 6.78 -2.39 -0.02 2.54 16 47 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 48 H 0.18 1.50 6.94 -2.91 -0.02 1.48 16 49 H 0.21 0.60 8.06 -2.91 -0.02 0.58 16 Total: -1.00 -79.38 387.54 1.53 -77.85 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: 0.95 Total: 8.71 kcal Atomic # 6 Polarization: 12.84 SS G_CDS: 6.86 Total: 19.70 kcal Atomic # 7 Polarization: -115.97 SS G_CDS: -7.33 Total: -123.30 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -0.97 Total: -32.31 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.35 kcal Total: -79.38 1.53 -77.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042234785.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.611 kcal (2) G-P(sol) polarization free energy of solvation -79.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds