Wall clock time and date at job start Wed Apr 1 2020 05:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42902 * 109.46701 * 2 1 4 4 C 1.35654 * 117.00095 * 180.02562 * 3 2 1 5 5 C 1.39345 * 120.53540 * 0.02562 * 4 3 2 6 6 C 1.38297 * 118.43541 * 180.23111 * 5 4 3 7 7 C 1.38775 * 119.44614 * 359.47633 * 6 5 4 8 8 N 1.31370 * 121.06313 * 0.53693 * 7 6 5 9 9 C 1.32853 * 121.69659 * 359.74498 * 8 7 6 10 10 C 1.47839 * 119.78155 * 180.02562 * 9 8 7 11 11 O 1.21555 * 119.99800 * 174.02404 * 10 9 8 12 12 N 1.34777 * 119.99615 * 354.02320 * 10 9 8 13 13 C 1.47149 * 121.22178 * 6.13352 * 12 10 9 14 14 C 1.52833 * 107.97841 * 237.28894 * 13 12 10 15 15 C 1.53091 * 110.58203 * 302.65406 * 14 13 12 16 16 H 1.09002 * 112.49508 * 289.44176 * 15 14 13 17 17 C 1.56028 * 106.39344 * 164.56392 * 15 14 13 18 18 C 1.54512 * 102.61183 * 281.62298 * 17 15 14 19 19 N 1.47439 * 107.14689 * 337.15407 * 18 17 15 20 20 C 1.36931 * 126.05982 * 178.37765 * 19 18 17 21 21 H 1.08001 * 120.00066 * 179.97438 * 20 19 18 22 22 C 1.38813 * 119.99801 * 359.97438 * 20 19 18 23 23 N 1.31613 * 120.00255 * 0.02562 * 22 20 19 24 24 Si 1.86809 * 119.99846 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46699 * 60.00351 * 24 22 20 26 26 H 1.48499 * 109.46926 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.46941 * 300.00390 * 24 22 20 28 28 C 1.46469 * 107.87845 * 358.37500 * 19 18 17 29 29 H 1.09005 * 108.42547 * 270.10288 * 28 19 18 30 30 C 1.46765 * 121.21298 * 185.84751 * 12 10 9 31 31 H 1.08995 * 109.46882 * 299.99908 * 1 2 3 32 32 H 1.09002 * 109.47283 * 59.99902 * 1 2 3 33 33 H 1.09002 * 109.46619 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.46991 * 240.00827 * 2 1 3 35 35 H 1.08994 * 109.47439 * 120.00367 * 2 1 3 36 36 H 1.07994 * 120.77962 * 359.94858 * 5 4 3 37 37 H 1.08004 * 120.27508 * 179.72766 * 6 5 4 38 38 H 1.08004 * 119.46289 * 180.25219 * 7 6 5 39 39 H 1.08999 * 109.75874 * 356.90771 * 13 12 10 40 40 H 1.09005 * 109.75910 * 117.61648 * 13 12 10 41 41 H 1.08998 * 109.25292 * 62.94462 * 14 13 12 42 42 H 1.09004 * 109.25185 * 182.37040 * 14 13 12 43 43 H 1.08995 * 110.78089 * 39.90304 * 17 15 14 44 44 H 1.08992 * 110.78180 * 163.34579 * 17 15 14 45 45 H 1.08997 * 109.90142 * 217.77016 * 18 17 15 46 46 H 1.09004 * 110.04923 * 96.61459 * 18 17 15 47 47 H 0.97000 * 119.99986 * 179.97438 * 23 22 20 48 48 H 1.09000 * 109.22902 * 247.78947 * 30 12 10 49 49 H 1.09006 * 109.22641 * 7.15160 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3511 1.5252 -0.0005 5 6 4.2103 0.4282 -0.0016 6 6 5.5738 0.6596 0.0028 7 6 6.0442 1.9652 -0.0030 8 7 5.2153 2.9844 -0.0020 9 6 3.8979 2.8127 -0.0005 10 6 3.0039 3.9901 0.0000 11 8 1.8024 3.8410 -0.1082 12 7 3.5212 5.2288 0.1205 13 6 4.9757 5.4515 0.1191 14 6 5.3446 6.1681 1.4176 15 6 4.5677 7.4809 1.5471 16 1 4.9046 8.2366 0.8375 17 6 4.6980 7.9244 3.0374 18 6 3.6704 7.0172 3.7504 19 7 2.6892 6.5908 2.7359 20 6 1.6276 5.7514 2.9441 21 1 0.9667 5.5036 2.1267 22 6 1.4008 5.2190 4.2059 23 7 2.2059 5.5214 5.2022 24 14 -0.0471 4.0733 4.4898 25 1 0.0871 2.8802 3.6158 26 1 -0.0687 3.6460 5.9118 27 1 -1.3109 4.7835 4.1675 28 6 3.0514 7.2243 1.4659 29 1 2.5421 8.1860 1.4031 30 6 2.6541 6.4057 0.2518 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3632 -1.0277 -0.0005 34 1 1.8934 -0.5137 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 3.8207 -0.5790 -0.0012 37 1 6.2667 -0.1688 0.0065 38 1 7.1090 2.1462 -0.0037 39 1 5.4949 4.4945 0.0660 40 1 5.2531 6.0690 -0.7353 41 1 5.1058 5.5240 2.2639 42 1 6.4135 6.3813 1.4193 43 1 5.7046 7.7361 3.4103 44 1 4.4319 8.9751 3.1528 45 1 3.1684 7.5751 4.5408 46 1 4.1709 6.1454 4.1721 47 1 2.0472 5.1497 6.0840 48 1 2.7442 7.0197 -0.6443 49 1 1.6197 6.0792 0.3599 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042388036.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:39 Heat of formation + Delta-G solvation = 24.733470 kcal Electronic energy + Delta-G solvation = -32731.837402 eV Core-core repulsion = 28661.374624 eV Total energy + Delta-G solvation = -4070.462778 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.98931 -39.40257 -38.31299 -37.63148 -34.76498 -32.72522 -32.51895 -32.10462 -30.87460 -30.08162 -28.80386 -28.16774 -25.23565 -24.40943 -24.31150 -22.96646 -22.40961 -22.01230 -20.28689 -19.81896 -18.44546 -18.07773 -17.22726 -16.70577 -16.36650 -16.23079 -15.36550 -15.13544 -14.73341 -14.69452 -14.56612 -14.14810 -13.80149 -13.77212 -13.56870 -13.27215 -12.79010 -12.68334 -12.64369 -12.55563 -12.34237 -12.24793 -11.82762 -11.50942 -11.25853 -11.21701 -11.14777 -10.96772 -10.71960 -10.64432 -10.62010 -10.05619 -9.92035 -9.85789 -9.69524 -9.53325 -9.49388 -9.37325 -8.45407 -8.42611 -8.41525 -7.80093 -6.64308 -5.54060 -2.84824 0.71170 1.15151 3.04857 3.13813 3.53430 3.53936 3.55117 3.61653 4.08923 4.27842 4.48138 4.61296 4.67004 4.82718 4.85063 4.96578 5.05018 5.12556 5.23425 5.36531 5.50762 5.55314 5.59101 5.73057 5.77712 5.78635 5.81406 5.83715 5.98945 6.05389 6.08222 6.11111 6.18361 6.22555 6.34259 6.43721 6.47121 6.60527 6.74077 6.79116 6.91604 6.97393 7.19955 7.23076 7.46563 7.68226 7.74547 7.76270 8.00924 8.16458 8.41664 8.86044 9.40087 10.01170 10.66890 11.58392 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009190 B = 0.005727 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3046.107203 B = 4888.204699 C = 6676.726674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.047 3.953 3 O -0.266 6.266 4 C 0.140 3.860 5 C -0.174 4.174 6 C -0.114 4.114 7 C 0.049 3.951 8 N -0.407 5.407 9 C 0.065 3.935 10 C 0.575 3.425 11 O -0.517 6.517 12 N -0.573 5.573 13 C 0.041 3.959 14 C -0.115 4.115 15 C -0.103 4.103 16 H 0.072 0.928 17 C -0.143 4.143 18 C 0.180 3.820 19 N -0.588 5.588 20 C -0.208 4.208 21 H 0.080 0.920 22 C -0.010 4.010 23 N -0.927 5.927 24 Si 0.903 3.097 25 H -0.284 1.284 26 H -0.294 1.294 27 H -0.286 1.286 28 C 0.155 3.845 29 H 0.024 0.976 30 C 0.112 3.888 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.144 0.856 37 H 0.140 0.860 38 H 0.165 0.835 39 H 0.170 0.830 40 H 0.047 0.953 41 H 0.074 0.926 42 H 0.055 0.945 43 H 0.057 0.943 44 H 0.052 0.948 45 H 0.039 0.961 46 H 0.044 0.956 47 H 0.248 0.752 48 H 0.053 0.947 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.139 -9.607 -12.718 18.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.028 4.028 3 O -0.176 6.176 4 C 0.089 3.911 5 C -0.200 4.200 6 C -0.134 4.134 7 C -0.110 4.110 8 N -0.118 5.118 9 C -0.074 4.074 10 C 0.361 3.639 11 O -0.392 6.392 12 N -0.304 5.304 13 C -0.082 4.082 14 C -0.153 4.153 15 C -0.123 4.123 16 H 0.091 0.909 17 C -0.182 4.182 18 C 0.055 3.945 19 N -0.313 5.313 20 C -0.337 4.337 21 H 0.098 0.902 22 C -0.205 4.205 23 N -0.576 5.576 24 Si 0.734 3.266 25 H -0.211 1.211 26 H -0.220 1.220 27 H -0.213 1.213 28 C 0.047 3.953 29 H 0.041 0.959 30 C -0.011 4.011 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.161 0.839 37 H 0.158 0.842 38 H 0.182 0.818 39 H 0.185 0.815 40 H 0.065 0.935 41 H 0.093 0.907 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.070 0.930 45 H 0.057 0.943 46 H 0.062 0.938 47 H 0.058 0.942 48 H 0.072 0.928 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.450 -8.839 -12.573 17.539 hybrid contribution -0.815 -1.562 0.507 1.833 sum 7.635 -10.401 -12.066 17.666 Atomic orbital electron populations 1.21740 0.92283 1.02404 1.04401 1.22925 0.96821 0.82163 1.00910 1.86484 1.16689 1.28374 1.86023 1.19938 0.84422 0.93573 0.93159 1.21746 0.94211 0.98655 1.05410 1.22082 0.95158 0.98704 0.97417 1.22901 1.00201 0.88302 0.99617 1.67169 1.02147 1.31929 1.10507 1.20968 0.90029 0.91731 1.04664 1.17361 0.86665 0.81995 0.77890 1.90797 1.13994 1.84828 1.49627 1.47561 1.07660 1.05214 1.69937 1.23577 0.81119 1.07169 0.96340 1.21744 0.97896 0.96668 0.99040 1.22400 0.96427 0.96715 0.96721 0.90950 1.23149 0.99904 0.99540 0.95575 1.21192 0.88044 0.94984 0.90240 1.44261 1.29900 1.54177 1.02937 1.18999 1.01621 1.18412 0.94627 0.90240 1.24682 0.99062 1.00786 0.95989 1.69956 1.38679 1.48375 1.00565 0.86298 0.82558 0.81387 0.76348 1.21070 1.21987 1.21299 1.20770 0.92592 0.94284 0.87668 0.95879 1.21531 0.96482 0.86200 0.96906 0.90985 0.91234 0.90566 0.92134 0.92018 0.83852 0.84173 0.81799 0.81532 0.93482 0.90741 0.92684 0.92428 0.92961 0.94292 0.93803 0.94158 0.92848 0.89003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 10.28 37.16 0.38 -1.36 16 2 C 0.05 0.57 5.48 37.16 0.20 0.77 16 3 O -0.27 -4.67 8.22 -40.53 -0.33 -5.00 16 4 C 0.14 2.29 6.71 -38.56 -0.26 2.03 16 5 C -0.17 -2.02 9.13 -39.15 -0.36 -2.38 16 6 C -0.11 -1.10 10.10 -39.36 -0.40 -1.50 16 7 C 0.05 0.54 11.17 -17.55 -0.20 0.34 16 8 N -0.41 -6.15 5.98 -9.71 -0.06 -6.20 16 9 C 0.06 1.18 6.70 -82.88 -0.56 0.62 16 10 C 0.58 12.45 7.68 -12.33 -0.09 12.36 16 11 O -0.52 -12.72 14.65 -16.55 -0.24 -12.96 16 12 N -0.57 -11.56 2.96 -174.93 -0.52 -12.08 16 13 C 0.04 0.69 6.26 -3.77 -0.02 0.66 16 14 C -0.12 -2.05 5.04 -26.77 -0.13 -2.18 16 15 C -0.10 -1.88 3.68 -88.43 -0.33 -2.21 16 16 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 17 C -0.14 -2.80 6.33 -24.32 -0.15 -2.95 16 18 C 0.18 4.53 4.61 -2.73 -0.01 4.52 16 19 N -0.59 -15.40 3.20 -164.14 -0.52 -15.92 16 20 C -0.21 -6.10 9.71 -15.06 -0.15 -6.24 16 21 H 0.08 2.39 6.53 -52.49 -0.34 2.04 16 22 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 23 N -0.93 -28.46 10.38 55.49 0.58 -27.88 16 24 Si 0.90 24.07 29.55 -169.99 -5.02 19.04 16 25 H -0.28 -7.65 7.11 56.52 0.40 -7.25 16 26 H -0.29 -7.76 7.11 56.52 0.40 -7.36 16 27 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 28 C 0.16 3.36 2.97 -68.07 -0.20 3.16 16 29 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 30 C 0.11 2.32 5.70 -4.54 -0.03 2.29 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.56 7.70 -51.93 -0.40 0.16 16 35 H 0.06 0.66 7.70 -51.93 -0.40 0.26 16 36 H 0.14 1.23 6.46 -52.49 -0.34 0.89 16 37 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 38 H 0.16 1.21 8.06 -52.48 -0.42 0.78 16 39 H 0.17 2.69 3.33 -104.36 -0.35 2.34 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 1.62 6.86 -51.93 -0.36 1.27 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.06 1.02 7.97 -51.93 -0.41 0.61 16 44 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.04 1.09 7.57 -51.93 -0.39 0.69 16 46 H 0.04 1.23 7.04 -51.93 -0.37 0.86 16 47 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 48 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 49 H 0.09 2.16 5.61 -51.93 -0.29 1.87 16 LS Contribution 377.75 15.07 5.69 5.69 Total: -1.00 -36.18 377.75 -10.26 -46.44 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -7.43 Total: 1.33 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: -2.39 Total: 7.54 kcal Atomic # 7 Polarization: -61.56 SS G_CDS: -0.53 Total: -62.08 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.58 Total: -17.96 kcal Atomic # 14 Polarization: 24.07 SS G_CDS: -5.02 Total: 19.04 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.18 -10.26 -46.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042388036.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.178 kcal (2) G-P(sol) polarization free energy of solvation -36.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds