Wall clock time and date at job start Wed Apr 1 2020 05:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42902 * 109.46701 * 2 1 4 4 C 1.35654 * 117.00095 * 180.02562 * 3 2 1 5 5 C 1.39345 * 120.53540 * 0.02562 * 4 3 2 6 6 C 1.38297 * 118.43541 * 180.23111 * 5 4 3 7 7 C 1.38775 * 119.44614 * 359.47633 * 6 5 4 8 8 N 1.31370 * 121.06313 * 0.53693 * 7 6 5 9 9 C 1.32853 * 121.69659 * 359.74498 * 8 7 6 10 10 C 1.47839 * 119.78155 * 180.02562 * 9 8 7 11 11 O 1.21555 * 119.99800 * 174.02404 * 10 9 8 12 12 N 1.34777 * 119.99615 * 354.02320 * 10 9 8 13 13 C 1.47149 * 121.22178 * 6.13352 * 12 10 9 14 14 C 1.52833 * 107.97841 * 237.28894 * 13 12 10 15 15 C 1.53091 * 110.58203 * 302.65406 * 14 13 12 16 16 H 1.09002 * 112.49508 * 289.44176 * 15 14 13 17 17 C 1.56028 * 106.39344 * 164.56392 * 15 14 13 18 18 C 1.54512 * 102.61183 * 281.62298 * 17 15 14 19 19 N 1.47439 * 107.14689 * 337.15407 * 18 17 15 20 20 C 1.36931 * 126.05982 * 178.37765 * 19 18 17 21 21 H 1.08001 * 120.00066 * 179.97438 * 20 19 18 22 22 C 1.38813 * 119.99801 * 359.97438 * 20 19 18 23 23 N 1.31613 * 120.00255 * 0.02562 * 22 20 19 24 24 Si 1.86809 * 119.99846 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46699 * 60.00351 * 24 22 20 26 26 H 1.48499 * 109.46926 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.46941 * 300.00390 * 24 22 20 28 28 C 1.46469 * 107.87845 * 358.37500 * 19 18 17 29 29 H 1.09005 * 108.42547 * 270.10288 * 28 19 18 30 30 C 1.46765 * 121.21298 * 185.84751 * 12 10 9 31 31 H 1.08995 * 109.46882 * 299.99908 * 1 2 3 32 32 H 1.09002 * 109.47283 * 59.99902 * 1 2 3 33 33 H 1.09002 * 109.46619 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.46991 * 240.00827 * 2 1 3 35 35 H 1.08994 * 109.47439 * 120.00367 * 2 1 3 36 36 H 1.07994 * 120.77962 * 359.94858 * 5 4 3 37 37 H 1.08004 * 120.27508 * 179.72766 * 6 5 4 38 38 H 1.08004 * 119.46289 * 180.25219 * 7 6 5 39 39 H 1.08999 * 109.75874 * 356.90771 * 13 12 10 40 40 H 1.09005 * 109.75910 * 117.61648 * 13 12 10 41 41 H 1.08998 * 109.25292 * 62.94462 * 14 13 12 42 42 H 1.09004 * 109.25185 * 182.37040 * 14 13 12 43 43 H 1.08995 * 110.78089 * 39.90304 * 17 15 14 44 44 H 1.08992 * 110.78180 * 163.34579 * 17 15 14 45 45 H 1.08997 * 109.90142 * 217.77016 * 18 17 15 46 46 H 1.09004 * 110.04923 * 96.61459 * 18 17 15 47 47 H 0.97000 * 119.99986 * 179.97438 * 23 22 20 48 48 H 1.09000 * 109.22902 * 247.78947 * 30 12 10 49 49 H 1.09006 * 109.22641 * 7.15160 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3511 1.5252 -0.0005 5 6 4.2103 0.4282 -0.0016 6 6 5.5738 0.6596 0.0028 7 6 6.0442 1.9652 -0.0030 8 7 5.2153 2.9844 -0.0020 9 6 3.8979 2.8127 -0.0005 10 6 3.0039 3.9901 0.0000 11 8 1.8024 3.8410 -0.1082 12 7 3.5212 5.2288 0.1205 13 6 4.9757 5.4515 0.1191 14 6 5.3446 6.1681 1.4176 15 6 4.5677 7.4809 1.5471 16 1 4.9046 8.2366 0.8375 17 6 4.6980 7.9244 3.0374 18 6 3.6704 7.0172 3.7504 19 7 2.6892 6.5908 2.7359 20 6 1.6276 5.7514 2.9441 21 1 0.9667 5.5036 2.1267 22 6 1.4008 5.2190 4.2059 23 7 2.2059 5.5214 5.2022 24 14 -0.0471 4.0733 4.4898 25 1 0.0871 2.8802 3.6158 26 1 -0.0687 3.6460 5.9118 27 1 -1.3109 4.7835 4.1675 28 6 3.0514 7.2243 1.4659 29 1 2.5421 8.1860 1.4031 30 6 2.6541 6.4057 0.2518 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3632 -1.0277 -0.0005 34 1 1.8934 -0.5137 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 3.8207 -0.5790 -0.0012 37 1 6.2667 -0.1688 0.0065 38 1 7.1090 2.1462 -0.0037 39 1 5.4949 4.4945 0.0660 40 1 5.2531 6.0690 -0.7353 41 1 5.1058 5.5240 2.2639 42 1 6.4135 6.3813 1.4193 43 1 5.7046 7.7361 3.4103 44 1 4.4319 8.9751 3.1528 45 1 3.1684 7.5751 4.5408 46 1 4.1709 6.1454 4.1721 47 1 2.0472 5.1497 6.0840 48 1 2.7442 7.0197 -0.6443 49 1 1.6197 6.0792 0.3599 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042388036.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:37 Heat of formation + Delta-G solvation = 0.908158 kcal Electronic energy + Delta-G solvation = -32732.870545 eV Core-core repulsion = 28661.374624 eV Total energy + Delta-G solvation = -4071.495921 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.12622 -40.89608 -39.46494 -39.18768 -36.45021 -34.66654 -33.61581 -33.08460 -32.65568 -31.25668 -30.38049 -29.99660 -26.62717 -26.31131 -25.49912 -24.28828 -23.81737 -23.10426 -21.74217 -21.67367 -19.97173 -19.20858 -18.59576 -18.37050 -17.82592 -17.28113 -16.94514 -16.66308 -16.27943 -16.09938 -15.98462 -15.56791 -15.50416 -15.09899 -14.93411 -14.59930 -14.31185 -14.18739 -13.96413 -13.65883 -13.60198 -13.53349 -13.28886 -13.19262 -13.00741 -12.89420 -12.66743 -12.58845 -12.34464 -12.19231 -12.09774 -11.90469 -11.68018 -11.47701 -11.34133 -11.18649 -11.02811 -10.82813 -10.69345 -9.63544 -9.61265 -9.27412 -8.81060 -7.85509 -5.15213 -0.33306 0.21196 1.30005 1.34418 1.42235 1.84360 2.06655 2.20839 2.45235 2.86340 3.18630 3.31825 3.52874 3.57684 3.71860 3.92936 3.95358 3.98377 4.05758 4.06705 4.10440 4.17635 4.25818 4.36372 4.42984 4.50082 4.60103 4.67616 4.70278 4.74903 4.76764 4.82343 4.89264 4.93179 5.00071 5.05657 5.13768 5.17700 5.19362 5.26819 5.34345 5.49894 5.62158 5.68363 5.75095 5.80197 6.05287 6.21806 6.30577 6.57618 6.77798 7.13482 7.34143 7.81519 8.45521 9.25018 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009190 B = 0.005727 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3046.107203 B = 4888.204699 C = 6676.726674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.038 3.962 3 O -0.313 6.313 4 C 0.116 3.884 5 C -0.168 4.168 6 C -0.088 4.088 7 C 0.053 3.947 8 N -0.421 5.421 9 C 0.012 3.988 10 C 0.559 3.441 11 O -0.571 6.571 12 N -0.578 5.578 13 C 0.037 3.963 14 C -0.108 4.108 15 C -0.088 4.088 16 H 0.118 0.882 17 C -0.128 4.128 18 C 0.189 3.811 19 N -0.604 5.604 20 C -0.204 4.204 21 H 0.061 0.939 22 C -0.065 4.065 23 N -0.948 5.948 24 Si 0.955 3.045 25 H -0.294 1.294 26 H -0.285 1.285 27 H -0.280 1.280 28 C 0.144 3.856 29 H 0.025 0.975 30 C 0.115 3.885 31 H 0.038 0.962 32 H 0.058 0.942 33 H 0.114 0.886 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.177 0.823 37 H 0.195 0.805 38 H 0.209 0.791 39 H 0.182 0.818 40 H 0.075 0.925 41 H 0.025 0.975 42 H 0.095 0.905 43 H 0.082 0.918 44 H 0.068 0.932 45 H 0.000 1.000 46 H 0.005 0.995 47 H 0.243 0.757 48 H 0.087 0.913 49 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.027 -11.109 -14.537 22.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.037 4.037 3 O -0.224 6.224 4 C 0.066 3.934 5 C -0.194 4.194 6 C -0.107 4.107 7 C -0.108 4.108 8 N -0.132 5.132 9 C -0.122 4.122 10 C 0.347 3.653 11 O -0.451 6.451 12 N -0.309 5.309 13 C -0.084 4.084 14 C -0.146 4.146 15 C -0.107 4.107 16 H 0.136 0.864 17 C -0.166 4.166 18 C 0.064 3.936 19 N -0.329 5.329 20 C -0.334 4.334 21 H 0.079 0.921 22 C -0.257 4.257 23 N -0.599 5.599 24 Si 0.785 3.215 25 H -0.222 1.222 26 H -0.210 1.210 27 H -0.207 1.207 28 C 0.037 3.963 29 H 0.043 0.957 30 C -0.009 4.009 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.133 0.867 34 H 0.112 0.888 35 H 0.093 0.907 36 H 0.195 0.805 37 H 0.212 0.788 38 H 0.226 0.774 39 H 0.197 0.803 40 H 0.093 0.907 41 H 0.044 0.956 42 H 0.113 0.887 43 H 0.100 0.900 44 H 0.087 0.913 45 H 0.018 0.982 46 H 0.024 0.976 47 H 0.052 0.948 48 H 0.105 0.895 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 12.350 -10.301 -14.417 21.598 hybrid contribution -1.933 -1.199 1.001 2.485 sum 10.417 -11.500 -13.415 20.512 Atomic orbital electron populations 1.21797 0.92622 1.04158 1.02193 1.23251 0.96713 0.80645 1.03044 1.86433 1.18065 1.31389 1.86525 1.20258 0.84648 0.94421 0.94116 1.22197 0.94636 0.98661 1.03947 1.22721 0.94948 0.99732 0.93274 1.23773 1.01563 0.88266 0.97225 1.66844 1.01039 1.33958 1.11350 1.20497 0.91003 0.91062 1.09684 1.18120 0.86851 0.83446 0.76910 1.90733 1.16346 1.85822 1.52153 1.47775 1.09000 1.04663 1.69420 1.23885 0.79111 1.08598 0.96788 1.21686 1.00081 0.95343 0.97513 1.22462 0.93395 0.98185 0.96663 0.86383 1.23016 0.99013 0.98858 0.95700 1.20953 0.88601 0.94100 0.89969 1.44441 1.29364 1.53682 1.05378 1.19014 1.02195 1.18239 0.93914 0.92136 1.25316 1.01571 1.02697 0.96116 1.70142 1.39877 1.49440 1.00430 0.85483 0.80433 0.79405 0.76171 1.22171 1.21027 1.20675 1.21071 0.95565 0.93729 0.85982 0.95712 1.21401 0.94619 0.87015 0.97903 0.94323 0.92273 0.86720 0.88800 0.90692 0.80532 0.78814 0.77403 0.80344 0.90664 0.95616 0.88679 0.89976 0.91289 0.98216 0.97626 0.94768 0.89454 0.93294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 10.28 71.98 0.74 -2.86 16 2 C 0.04 0.90 5.48 71.98 0.39 1.30 16 3 O -0.31 -11.58 8.22 -68.78 -0.57 -12.15 16 4 C 0.12 3.83 6.71 22.93 0.15 3.99 16 5 C -0.17 -3.40 9.13 22.55 0.21 -3.19 16 6 C -0.09 -1.24 10.10 22.41 0.23 -1.01 16 7 C 0.05 0.95 11.17 84.89 0.95 1.89 16 8 N -0.42 -12.07 5.98 -184.62 -1.10 -13.18 16 9 C 0.01 0.46 6.70 41.93 0.28 0.74 16 10 C 0.56 25.73 7.68 86.78 0.67 26.40 16 11 O -0.57 -30.80 14.65 17.02 0.25 -30.55 16 12 N -0.58 -23.97 2.96 -825.63 -2.45 -26.41 16 13 C 0.04 1.20 6.26 86.20 0.54 1.73 16 14 C -0.11 -3.60 5.04 30.57 0.15 -3.45 16 15 C -0.09 -2.99 3.68 -9.37 -0.03 -3.03 16 16 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 17 C -0.13 -4.77 6.33 32.16 0.20 -4.57 16 18 C 0.19 9.87 4.61 86.71 0.40 10.27 16 19 N -0.60 -33.16 3.20 -673.23 -2.15 -35.32 16 20 C -0.20 -12.73 9.71 84.03 0.82 -11.91 16 21 H 0.06 3.96 6.53 -2.91 -0.02 3.94 16 22 C -0.06 -4.09 5.49 84.86 0.47 -3.63 16 23 N -0.95 -61.38 10.38 21.65 0.22 -61.15 16 24 Si 0.96 52.41 29.55 68.60 2.03 54.44 16 25 H -0.29 -16.50 7.11 99.48 0.71 -15.79 16 26 H -0.28 -15.06 7.11 99.48 0.71 -14.36 16 27 H -0.28 -14.95 7.11 99.48 0.71 -14.24 16 28 C 0.14 6.27 2.97 44.92 0.13 6.40 16 29 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16 30 C 0.11 4.89 5.70 85.91 0.49 5.38 16 31 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.09 1.55 7.70 -2.39 -0.02 1.53 16 35 H 0.07 1.53 7.70 -2.39 -0.02 1.51 16 36 H 0.18 2.25 6.46 -2.91 -0.02 2.23 16 37 H 0.19 0.74 8.06 -2.91 -0.02 0.71 16 38 H 0.21 1.78 8.06 -2.91 -0.02 1.76 16 39 H 0.18 5.44 3.33 -105.92 -0.35 5.09 16 40 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 41 H 0.02 1.11 6.86 -2.39 -0.02 1.09 16 42 H 0.09 2.43 8.14 -2.38 -0.02 2.41 16 43 H 0.08 2.69 7.97 -2.39 -0.02 2.67 16 44 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 45 H 0.00 -0.02 7.57 -2.39 -0.02 -0.04 16 46 H 0.01 0.33 7.04 -2.39 -0.02 0.31 16 47 H 0.24 15.35 8.31 -92.71 -0.77 14.58 16 48 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 49 H 0.05 2.50 5.61 -2.38 -0.01 2.48 16 Total: -1.00 -91.74 377.75 3.63 -88.11 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: 0.62 Total: 11.75 kcal Atomic # 6 Polarization: 17.68 SS G_CDS: 6.78 Total: 24.46 kcal Atomic # 7 Polarization: -130.58 SS G_CDS: -5.48 Total: -136.06 kcal Atomic # 8 Polarization: -42.38 SS G_CDS: -0.32 Total: -42.70 kcal Atomic # 14 Polarization: 52.41 SS G_CDS: 2.03 Total: 54.44 kcal Total: -91.74 3.63 -88.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042388036.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.016 kcal (2) G-P(sol) polarization free energy of solvation -91.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds