Wall clock time and date at job start Wed Apr 1 2020 05:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.47005 * 2 1 4 4 C 1.35509 * 116.99828 * 180.02562 * 3 2 1 5 5 C 1.39164 * 119.52382 * 180.02562 * 4 3 2 6 6 C 1.37960 * 119.26382 * 179.76609 * 5 4 3 7 7 C 1.40283 * 118.35433 * 0.47572 * 6 5 4 8 8 C 1.47610 * 120.50012 * 179.75717 * 7 6 5 9 9 O 1.21581 * 120.00146 * 218.91148 * 8 7 6 10 10 N 1.34780 * 119.99959 * 38.90059 * 8 7 6 11 11 C 1.44789 * 120.17771 * 175.67250 * 10 8 7 12 12 C 1.51512 * 112.22151 * 264.53611 * 11 10 8 13 13 C 1.51311 * 113.25381 * 285.37032 * 12 11 10 14 14 H 1.08997 * 111.31605 * 185.24015 * 13 12 11 15 15 C 1.54721 * 106.47905 * 307.66082 * 13 12 11 16 16 C 1.54619 * 104.28716 * 88.99293 * 15 13 12 17 17 C 1.50870 * 105.21555 * 11.53758 * 16 15 13 18 18 H 1.09000 * 105.90138 * 122.36111 * 17 16 15 19 19 C 1.49816 * 120.18046 * 355.65282 * 10 8 7 20 20 N 1.48066 * 109.90494 * 8.04029 * 17 16 15 21 21 C 1.36932 * 127.83894 * 155.16302 * 20 17 16 22 22 H 1.08003 * 119.99976 * 152.21124 * 21 20 17 23 23 C 1.38811 * 120.00330 * 332.21081 * 21 20 17 24 24 N 1.31618 * 120.00307 * 158.97926 * 23 21 20 25 25 Si 1.86803 * 119.99878 * 338.97879 * 23 21 20 26 26 H 1.48496 * 109.47021 * 95.04854 * 25 23 21 27 27 H 1.48493 * 109.47104 * 215.05350 * 25 23 21 28 28 H 1.48500 * 109.46999 * 335.05162 * 25 23 21 29 29 C 1.39526 * 119.00328 * 359.47930 * 7 6 5 30 30 N 1.31671 * 120.62523 * 0.30006 * 29 7 6 31 31 H 1.09004 * 109.46473 * 299.99158 * 1 2 3 32 32 H 1.08998 * 109.47222 * 59.99047 * 1 2 3 33 33 H 1.09001 * 109.46814 * 179.97438 * 1 2 3 34 34 H 1.09008 * 109.46903 * 240.01046 * 2 1 3 35 35 H 1.08998 * 109.47746 * 120.00922 * 2 1 3 36 36 H 1.08006 * 120.37158 * 0.02562 * 5 4 3 37 37 H 1.07997 * 120.82130 * 180.23019 * 6 5 4 38 38 H 1.09004 * 108.93065 * 143.83166 * 11 10 8 39 39 H 1.08995 * 108.93414 * 25.24164 * 11 10 8 40 40 H 1.09005 * 108.73032 * 164.39470 * 12 11 10 41 41 H 1.09004 * 108.72518 * 46.34089 * 12 11 10 42 42 H 1.09002 * 110.45126 * 207.83564 * 15 13 12 43 43 H 1.09000 * 110.45677 * 330.39081 * 15 13 12 44 44 H 1.09002 * 110.17341 * 252.68235 * 16 15 13 45 45 H 1.09004 * 110.53478 * 130.58164 * 16 15 13 46 46 H 1.08995 * 109.54587 * 270.57601 * 19 10 8 47 47 H 1.08996 * 109.54304 * 30.85253 * 19 10 8 48 48 H 0.96999 * 120.00089 * 179.97438 * 24 23 21 49 49 H 1.07999 * 119.68399 * 180.27389 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3497 1.5248 -0.0005 5 6 3.8709 2.8151 0.0000 6 6 5.2394 2.9897 0.0043 7 6 6.0565 1.8494 -0.0021 8 6 7.5267 1.9812 -0.0033 9 8 8.2046 1.2227 -0.6691 10 7 8.1177 2.9426 0.7337 11 6 9.5616 3.0171 0.8098 12 6 10.1082 2.3093 2.0328 13 6 9.8854 3.0776 3.3171 14 1 10.3695 2.5869 4.1615 15 6 10.4384 4.5026 3.0776 16 6 9.2375 5.2857 2.4986 17 6 8.0416 4.3908 2.7115 18 1 7.3360 4.9716 3.3054 19 6 7.2840 3.9402 1.4782 20 7 8.4241 3.2280 3.5445 21 6 7.6143 2.4613 4.3392 22 1 7.8679 1.4295 4.5327 23 6 6.4674 3.0103 4.8960 24 7 5.4902 2.2253 5.2978 25 14 6.3107 4.8631 5.0752 26 1 5.5780 5.4132 3.9067 27 1 5.5655 5.1787 6.3202 28 1 7.6644 5.4701 5.1412 29 6 5.4586 0.5887 -0.0016 30 7 4.1475 0.4682 -0.0011 31 1 -0.3632 0.5137 0.8901 32 1 -0.3633 0.5140 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5137 -0.8902 35 1 1.8934 -0.5139 0.8898 36 1 3.2114 3.6705 0.0012 37 1 5.6710 3.9797 0.0086 38 1 9.8604 4.0648 0.8445 39 1 9.9869 2.5593 -0.0833 40 1 11.1789 2.1549 1.8986 41 1 9.6250 1.3360 2.1190 42 1 10.7683 4.9461 4.0171 43 1 11.2576 4.4776 2.3589 44 1 9.3867 5.4701 1.4347 45 1 9.1036 6.2281 3.0297 46 1 7.0840 4.7989 0.8373 47 1 6.3426 3.4787 1.7762 48 1 4.6889 2.6089 5.6873 49 1 6.0772 -0.2966 -0.0021 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045790936.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:11 Heat of formation + Delta-G solvation = 22.033883 kcal Electronic energy + Delta-G solvation = -32306.662694 eV Core-core repulsion = 28236.082853 eV Total energy + Delta-G solvation = -4070.579841 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.85744 -40.04609 -38.54702 -37.48158 -34.48746 -33.37861 -32.43861 -32.17744 -31.87095 -30.21601 -30.02514 -27.56497 -26.30458 -24.47847 -23.99337 -23.82495 -22.30530 -22.02831 -20.50424 -19.60340 -18.76247 -18.48105 -17.50670 -16.89628 -16.35939 -16.22219 -15.87953 -15.48392 -15.24320 -14.79796 -14.44485 -14.13443 -13.89049 -13.80398 -13.77813 -13.51576 -13.16887 -12.81112 -12.76020 -12.53020 -12.39751 -12.28805 -12.13670 -11.76916 -11.69489 -11.58520 -11.42226 -11.26137 -11.08516 -10.82274 -10.75336 -10.66412 -10.25033 -10.00000 -9.87346 -9.74528 -9.67710 -9.43339 -9.25373 -8.63925 -8.40401 -8.16014 -7.07647 -6.05251 -3.39367 1.04963 1.34328 3.00979 3.05411 3.18652 3.36643 3.39095 3.43970 3.99465 4.37771 4.42236 4.66097 4.73642 4.92971 4.96164 5.00752 5.04236 5.13288 5.14042 5.18978 5.26077 5.35109 5.40954 5.46660 5.54974 5.61587 5.70427 5.76509 5.77407 5.80552 5.85361 5.87970 5.91996 5.99088 6.04220 6.10539 6.17863 6.26319 6.33413 6.41453 6.43922 6.51093 6.62722 6.71941 6.85350 7.04843 7.28995 7.65650 7.73050 7.93138 8.24530 8.53651 8.73244 9.57497 10.18168 11.10800 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011674 B = 0.004472 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.948555 B = 6260.203302 C = 7653.554126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.064 3.936 3 O -0.306 6.306 4 C 0.340 3.660 5 C -0.196 4.196 6 C -0.014 4.014 7 C -0.209 4.209 8 C 0.572 3.428 9 O -0.552 6.552 10 N -0.580 5.580 11 C 0.115 3.885 12 C -0.147 4.147 13 C 0.151 3.849 14 H 0.073 0.927 15 C -0.132 4.132 16 C -0.120 4.120 17 C 0.121 3.879 18 H 0.040 0.960 19 C 0.100 3.900 20 N -0.586 5.586 21 C -0.232 4.232 22 H 0.087 0.913 23 C 0.031 3.969 24 N -0.899 5.899 25 Si 0.875 3.125 26 H -0.287 1.287 27 H -0.301 1.301 28 H -0.269 1.269 29 C 0.202 3.798 30 N -0.542 5.542 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.144 0.856 37 H 0.148 0.852 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.065 0.935 46 H 0.058 0.942 47 H 0.092 0.908 48 H 0.264 0.736 49 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.751 3.482 -11.057 11.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 O -0.213 6.213 4 C 0.161 3.839 5 C -0.216 4.216 6 C -0.040 4.040 7 C -0.214 4.214 8 C 0.361 3.639 9 O -0.432 6.432 10 N -0.311 5.311 11 C -0.008 4.008 12 C -0.187 4.187 13 C 0.044 3.956 14 H 0.091 0.909 15 C -0.171 4.171 16 C -0.158 4.158 17 C 0.014 3.986 18 H 0.057 0.943 19 C -0.024 4.024 20 N -0.309 5.309 21 C -0.359 4.359 22 H 0.105 0.895 23 C -0.169 4.169 24 N -0.541 5.541 25 Si 0.707 3.293 26 H -0.215 1.215 27 H -0.230 1.230 28 H -0.195 1.195 29 C 0.045 3.955 30 N -0.265 5.265 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.162 0.838 37 H 0.166 0.834 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.083 0.917 46 H 0.076 0.924 47 H 0.110 0.890 48 H 0.074 0.926 49 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -1.265 2.347 -11.187 11.500 hybrid contribution -0.013 1.682 0.445 1.740 sum -1.278 4.030 -10.741 11.543 Atomic orbital electron populations 1.21817 0.93140 1.02797 1.03212 1.22632 0.94605 0.81057 1.02813 1.86178 1.16988 1.30844 1.87267 1.19952 0.83934 0.90055 0.89978 1.20920 0.95479 0.95798 1.09452 1.21797 0.92306 0.99122 0.90762 1.20686 0.94750 0.95308 1.10664 1.17878 0.86687 0.80181 0.79191 1.90729 1.65260 1.43615 1.43610 1.47992 1.06710 1.29855 1.46514 1.20921 0.79811 1.01599 0.98477 1.21932 0.99409 1.01120 0.96280 1.21274 0.86336 0.93093 0.94908 0.90861 1.22740 0.96721 0.97277 1.00337 1.21878 0.95364 0.98076 1.00487 1.20664 0.95708 0.90940 0.91262 0.94273 1.22907 0.96016 0.90406 0.93045 1.45188 1.02281 1.34683 1.48773 1.18459 1.02837 0.92717 1.21861 0.89539 1.25158 0.96519 0.97058 0.98193 1.69826 1.05730 1.34604 1.43958 0.86888 0.77568 0.88342 0.76521 1.21500 1.22955 1.19488 1.22414 0.88575 0.96304 0.88235 1.67357 1.06249 1.32633 1.20273 0.91555 0.91839 0.90360 0.91604 0.91208 0.83784 0.83427 0.90283 0.90729 0.92162 0.91858 0.91942 0.91446 0.91150 0.91666 0.92364 0.88955 0.92641 0.81680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 10.28 37.16 0.38 -1.04 16 2 C 0.06 0.80 6.02 37.16 0.22 1.02 16 3 O -0.31 -4.62 10.10 -18.22 -0.18 -4.80 16 4 C 0.34 5.62 7.49 -16.96 -0.13 5.50 16 5 C -0.20 -2.98 10.02 -39.34 -0.39 -3.37 16 6 C -0.01 -0.22 7.60 -38.92 -0.30 -0.52 16 7 C -0.21 -3.69 5.27 -104.82 -0.55 -4.24 16 8 C 0.57 10.78 7.37 -12.43 -0.09 10.69 16 9 O -0.55 -11.45 16.39 5.29 0.09 -11.36 16 10 N -0.58 -10.22 2.87 -175.21 -0.50 -10.73 16 11 C 0.11 1.82 5.18 -5.71 -0.03 1.79 16 12 C -0.15 -2.45 5.01 -28.34 -0.14 -2.60 16 13 C 0.15 2.73 4.08 -66.69 -0.27 2.46 16 14 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 15 C -0.13 -1.94 6.04 -24.97 -0.15 -2.09 16 16 C -0.12 -1.83 5.80 -26.95 -0.16 -1.98 16 17 C 0.12 2.32 1.82 -68.85 -0.13 2.20 16 18 H 0.04 0.85 2.53 -51.93 -0.13 0.72 16 19 C 0.10 1.76 4.41 -2.91 -0.01 1.75 16 20 N -0.59 -12.94 2.35 -157.28 -0.37 -13.31 16 21 C -0.23 -6.20 10.66 -15.06 -0.16 -6.36 16 22 H 0.09 2.55 8.06 -52.48 -0.42 2.13 16 23 C 0.03 0.85 5.46 -17.43 -0.10 0.75 16 24 N -0.90 -26.71 13.97 55.49 0.78 -25.94 16 25 Si 0.88 21.29 24.76 -169.99 -4.21 17.08 16 26 H -0.29 -6.67 7.00 56.52 0.40 -6.27 16 27 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 28 H -0.27 -6.35 6.95 56.52 0.39 -5.96 16 29 C 0.20 3.56 10.80 -17.14 -0.19 3.38 16 30 N -0.54 -9.41 9.18 -12.96 -0.12 -9.53 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.79 8.10 -51.92 -0.42 0.36 16 35 H 0.07 0.94 8.10 -51.93 -0.42 0.51 16 36 H 0.14 1.81 8.06 -52.48 -0.42 1.39 16 37 H 0.15 1.96 5.50 -52.49 -0.29 1.67 16 38 H 0.08 1.09 3.92 -51.93 -0.20 0.89 16 39 H 0.07 1.19 7.17 -51.93 -0.37 0.82 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.07 0.81 7.38 -51.93 -0.38 0.43 16 44 H 0.07 0.90 6.13 -51.93 -0.32 0.58 16 45 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.06 0.82 7.17 -51.93 -0.37 0.45 16 47 H 0.09 1.87 5.64 -51.93 -0.29 1.57 16 48 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 49 H 0.17 2.74 8.05 -52.49 -0.42 2.32 16 LS Contribution 373.24 15.07 5.62 5.62 Total: -1.00 -32.26 373.24 -8.09 -40.34 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -7.00 Total: 5.29 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: -2.19 Total: 7.33 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: -0.21 Total: -59.50 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: -0.10 Total: -16.16 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.21 Total: 17.08 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.26 -8.09 -40.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045790936.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.377 kcal (2) G-P(sol) polarization free energy of solvation -32.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds