Wall clock time and date at job start Wed Apr 1 2020 05:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.47005 * 2 1 4 4 C 1.35509 * 116.99828 * 180.02562 * 3 2 1 5 5 C 1.39164 * 119.52382 * 180.02562 * 4 3 2 6 6 C 1.37960 * 119.26382 * 179.76609 * 5 4 3 7 7 C 1.40283 * 118.35433 * 0.47572 * 6 5 4 8 8 C 1.47610 * 120.50012 * 179.75717 * 7 6 5 9 9 O 1.21581 * 120.00146 * 218.91148 * 8 7 6 10 10 N 1.34780 * 119.99959 * 38.90059 * 8 7 6 11 11 C 1.44789 * 120.17771 * 175.67250 * 10 8 7 12 12 C 1.51512 * 112.22151 * 264.53611 * 11 10 8 13 13 C 1.51311 * 113.25381 * 285.37032 * 12 11 10 14 14 H 1.08997 * 111.31605 * 185.24015 * 13 12 11 15 15 C 1.54721 * 106.47905 * 307.66082 * 13 12 11 16 16 C 1.54619 * 104.28716 * 88.99293 * 15 13 12 17 17 C 1.50870 * 105.21555 * 11.53758 * 16 15 13 18 18 H 1.09000 * 105.90138 * 122.36111 * 17 16 15 19 19 C 1.49816 * 120.18046 * 355.65282 * 10 8 7 20 20 N 1.48066 * 109.90494 * 8.04029 * 17 16 15 21 21 C 1.36932 * 127.83894 * 155.16302 * 20 17 16 22 22 H 1.08003 * 119.99976 * 152.21124 * 21 20 17 23 23 C 1.38811 * 120.00330 * 332.21081 * 21 20 17 24 24 N 1.31618 * 120.00307 * 158.97926 * 23 21 20 25 25 Si 1.86803 * 119.99878 * 338.97879 * 23 21 20 26 26 H 1.48496 * 109.47021 * 95.04854 * 25 23 21 27 27 H 1.48493 * 109.47104 * 215.05350 * 25 23 21 28 28 H 1.48500 * 109.46999 * 335.05162 * 25 23 21 29 29 C 1.39526 * 119.00328 * 359.47930 * 7 6 5 30 30 N 1.31671 * 120.62523 * 0.30006 * 29 7 6 31 31 H 1.09004 * 109.46473 * 299.99158 * 1 2 3 32 32 H 1.08998 * 109.47222 * 59.99047 * 1 2 3 33 33 H 1.09001 * 109.46814 * 179.97438 * 1 2 3 34 34 H 1.09008 * 109.46903 * 240.01046 * 2 1 3 35 35 H 1.08998 * 109.47746 * 120.00922 * 2 1 3 36 36 H 1.08006 * 120.37158 * 0.02562 * 5 4 3 37 37 H 1.07997 * 120.82130 * 180.23019 * 6 5 4 38 38 H 1.09004 * 108.93065 * 143.83166 * 11 10 8 39 39 H 1.08995 * 108.93414 * 25.24164 * 11 10 8 40 40 H 1.09005 * 108.73032 * 164.39470 * 12 11 10 41 41 H 1.09004 * 108.72518 * 46.34089 * 12 11 10 42 42 H 1.09002 * 110.45126 * 207.83564 * 15 13 12 43 43 H 1.09000 * 110.45677 * 330.39081 * 15 13 12 44 44 H 1.09002 * 110.17341 * 252.68235 * 16 15 13 45 45 H 1.09004 * 110.53478 * 130.58164 * 16 15 13 46 46 H 1.08995 * 109.54587 * 270.57601 * 19 10 8 47 47 H 1.08996 * 109.54304 * 30.85253 * 19 10 8 48 48 H 0.96999 * 120.00089 * 179.97438 * 24 23 21 49 49 H 1.07999 * 119.68399 * 180.27389 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3497 1.5248 -0.0005 5 6 3.8709 2.8151 0.0000 6 6 5.2394 2.9897 0.0043 7 6 6.0565 1.8494 -0.0021 8 6 7.5267 1.9812 -0.0033 9 8 8.2046 1.2227 -0.6691 10 7 8.1177 2.9426 0.7337 11 6 9.5616 3.0171 0.8098 12 6 10.1082 2.3093 2.0328 13 6 9.8854 3.0776 3.3171 14 1 10.3695 2.5869 4.1615 15 6 10.4384 4.5026 3.0776 16 6 9.2375 5.2857 2.4986 17 6 8.0416 4.3908 2.7115 18 1 7.3360 4.9716 3.3054 19 6 7.2840 3.9402 1.4782 20 7 8.4241 3.2280 3.5445 21 6 7.6143 2.4613 4.3392 22 1 7.8679 1.4295 4.5327 23 6 6.4674 3.0103 4.8960 24 7 5.4902 2.2253 5.2978 25 14 6.3107 4.8631 5.0752 26 1 5.5780 5.4132 3.9067 27 1 5.5655 5.1787 6.3202 28 1 7.6644 5.4701 5.1412 29 6 5.4586 0.5887 -0.0016 30 7 4.1475 0.4682 -0.0011 31 1 -0.3632 0.5137 0.8901 32 1 -0.3633 0.5140 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5137 -0.8902 35 1 1.8934 -0.5139 0.8898 36 1 3.2114 3.6705 0.0012 37 1 5.6710 3.9797 0.0086 38 1 9.8604 4.0648 0.8445 39 1 9.9869 2.5593 -0.0833 40 1 11.1789 2.1549 1.8986 41 1 9.6250 1.3360 2.1190 42 1 10.7683 4.9461 4.0171 43 1 11.2576 4.4776 2.3589 44 1 9.3867 5.4701 1.4347 45 1 9.1036 6.2281 3.0297 46 1 7.0840 4.7989 0.8373 47 1 6.3426 3.4787 1.7762 48 1 4.6889 2.6089 5.6873 49 1 6.0772 -0.2966 -0.0021 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045790936.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:09 Heat of formation + Delta-G solvation = -0.554887 kcal Electronic energy + Delta-G solvation = -32307.642216 eV Core-core repulsion = 28236.082853 eV Total energy + Delta-G solvation = -4071.559363 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.19222 -41.37081 -39.91810 -38.77476 -35.95574 -35.04363 -33.99088 -33.44181 -33.03242 -31.90705 -31.23619 -28.92373 -27.74892 -25.90414 -25.45948 -25.21830 -23.53165 -23.21746 -21.90320 -21.14498 -20.15376 -19.69706 -19.10308 -18.28329 -17.85728 -17.47704 -17.38460 -16.98044 -16.63931 -16.20682 -15.73591 -15.47387 -15.40534 -15.08312 -14.99290 -14.89976 -14.75824 -14.37072 -14.12015 -13.73141 -13.70417 -13.38137 -13.31902 -13.26612 -13.11417 -12.98452 -12.78976 -12.54357 -12.50685 -12.40097 -12.17463 -11.78949 -11.72098 -11.64098 -11.35050 -11.27994 -10.96012 -10.88831 -10.72672 -10.53371 -9.75020 -9.51731 -8.91055 -8.17627 -5.47125 -0.27581 0.08247 1.25898 1.40363 1.50276 1.60331 1.88369 2.06630 2.40955 2.66714 2.98930 3.10510 3.31912 3.37628 3.70729 3.78480 3.86444 3.88585 3.95607 4.03564 4.05800 4.14641 4.16487 4.27005 4.36444 4.41190 4.48658 4.50574 4.56359 4.58886 4.67584 4.76214 4.79784 4.86165 4.90855 4.91830 4.98891 5.08268 5.11883 5.15441 5.20693 5.24969 5.33046 5.39944 5.53647 5.70646 5.78287 6.07603 6.13698 6.31147 6.61869 6.78109 7.10487 7.53310 8.24149 9.03489 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011674 B = 0.004472 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.948555 B = 6260.203302 C = 7653.554126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.057 3.943 3 O -0.309 6.309 4 C 0.324 3.676 5 C -0.194 4.194 6 C -0.009 4.009 7 C -0.227 4.227 8 C 0.568 3.432 9 O -0.580 6.580 10 N -0.578 5.578 11 C 0.112 3.888 12 C -0.138 4.138 13 C 0.138 3.862 14 H 0.056 0.944 15 C -0.120 4.120 16 C -0.117 4.117 17 C 0.117 3.883 18 H 0.022 0.978 19 C 0.098 3.902 20 N -0.607 5.607 21 C -0.216 4.216 22 H 0.034 0.966 23 C -0.028 4.028 24 N -0.955 5.955 25 Si 0.945 3.055 26 H -0.265 1.265 27 H -0.318 1.318 28 H -0.253 1.253 29 C 0.183 3.817 30 N -0.555 5.555 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.068 0.932 35 H 0.053 0.947 36 H 0.175 0.825 37 H 0.176 0.824 38 H 0.116 0.884 39 H 0.076 0.924 40 H 0.094 0.906 41 H 0.014 0.986 42 H 0.065 0.935 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.079 0.921 46 H 0.109 0.891 47 H 0.062 0.938 48 H 0.260 0.740 49 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.277 7.500 -12.897 14.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.017 4.017 3 O -0.216 6.216 4 C 0.146 3.854 5 C -0.214 4.214 6 C -0.034 4.034 7 C -0.232 4.232 8 C 0.357 3.643 9 O -0.462 6.462 10 N -0.308 5.308 11 C -0.010 4.010 12 C -0.178 4.178 13 C 0.033 3.967 14 H 0.074 0.926 15 C -0.158 4.158 16 C -0.155 4.155 17 C 0.011 3.989 18 H 0.039 0.961 19 C -0.025 4.025 20 N -0.331 5.331 21 C -0.345 4.345 22 H 0.052 0.948 23 C -0.223 4.223 24 N -0.601 5.601 25 Si 0.774 3.226 26 H -0.192 1.192 27 H -0.248 1.248 28 H -0.177 1.177 29 C 0.026 3.974 30 N -0.279 5.279 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.119 0.881 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.193 0.807 37 H 0.194 0.806 38 H 0.133 0.867 39 H 0.094 0.906 40 H 0.112 0.888 41 H 0.033 0.967 42 H 0.084 0.916 43 H 0.126 0.874 44 H 0.126 0.874 45 H 0.098 0.902 46 H 0.127 0.873 47 H 0.080 0.920 48 H 0.069 0.931 49 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -0.189 6.399 -13.055 14.540 hybrid contribution -0.298 0.259 1.031 1.104 sum -0.487 6.658 -12.024 13.753 Atomic orbital electron populations 1.21827 0.90347 1.04404 1.03550 1.22861 0.96759 0.79979 1.02146 1.86189 1.16140 1.32233 1.87024 1.20348 0.84509 0.90608 0.89983 1.21316 0.95860 0.96180 1.08039 1.22092 0.92259 0.99512 0.89556 1.20763 0.94656 0.96077 1.11752 1.18070 0.87068 0.80053 0.79123 1.90700 1.65932 1.44576 1.45009 1.48077 1.07578 1.29475 1.45690 1.21108 0.78696 1.03518 0.97663 1.21857 1.01116 0.98532 0.96322 1.21499 0.84198 0.96163 0.94883 0.92564 1.22693 0.97589 0.93688 1.01844 1.21966 0.92965 0.97372 1.03175 1.20982 0.97426 0.89693 0.90830 0.96092 1.22954 0.94482 0.91510 0.93570 1.45222 1.03916 1.34982 1.48983 1.18152 1.03189 0.91283 1.21870 0.94837 1.25756 0.96094 1.01736 0.98684 1.69995 1.06642 1.36797 1.46625 0.85776 0.78155 0.82389 0.76242 1.19160 1.24777 1.17722 1.22456 0.88940 0.96718 0.89316 1.67312 1.06159 1.33572 1.20850 0.91823 0.90800 0.88134 0.91331 0.92880 0.80719 0.80650 0.86670 0.90592 0.88806 0.96677 0.91606 0.87440 0.87431 0.90206 0.87332 0.92016 0.93132 0.82177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 10.28 71.98 0.74 -1.79 16 2 C 0.06 1.45 6.02 71.98 0.43 1.88 16 3 O -0.31 -9.30 10.10 -88.10 -0.89 -10.19 16 4 C 0.32 10.82 7.49 84.83 0.64 11.46 16 5 C -0.19 -5.64 10.02 22.43 0.22 -5.41 16 6 C -0.01 -0.27 7.60 22.70 0.17 -0.10 16 7 C -0.23 -8.13 5.27 -20.00 -0.11 -8.23 16 8 C 0.57 21.34 7.37 86.72 0.64 21.98 16 9 O -0.58 -24.40 16.39 -3.97 -0.07 -24.47 16 10 N -0.58 -19.25 2.87 -826.50 -2.37 -21.62 16 11 C 0.11 3.20 5.18 86.21 0.45 3.64 16 12 C -0.14 -4.41 5.01 29.55 0.15 -4.26 16 13 C 0.14 4.79 4.08 44.61 0.18 4.97 16 14 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 15 C -0.12 -2.91 6.04 31.73 0.19 -2.72 16 16 C -0.12 -2.85 5.80 30.45 0.18 -2.67 16 17 C 0.12 4.07 1.82 43.54 0.08 4.15 16 18 H 0.02 0.84 2.53 -2.39 -0.01 0.83 16 19 C 0.10 3.15 4.41 85.27 0.38 3.52 16 20 N -0.61 -26.50 2.35 -651.52 -1.53 -28.02 16 21 C -0.22 -12.07 10.66 84.03 0.90 -11.17 16 22 H 0.03 2.17 8.06 -2.91 -0.02 2.14 16 23 C -0.03 -1.57 5.46 84.86 0.46 -1.11 16 24 N -0.95 -59.66 13.97 21.65 0.30 -59.36 16 25 Si 0.94 44.09 24.76 68.60 1.70 45.79 16 26 H -0.27 -11.28 7.00 99.48 0.70 -10.58 16 27 H -0.32 -15.58 7.11 99.48 0.71 -14.87 16 28 H -0.25 -10.93 6.95 99.48 0.69 -10.24 16 29 C 0.18 6.82 10.80 85.03 0.92 7.74 16 30 N -0.56 -20.14 9.18 -307.81 -2.82 -22.96 16 31 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.07 1.67 8.10 -2.38 -0.02 1.65 16 35 H 0.05 1.50 8.10 -2.39 -0.02 1.48 16 36 H 0.18 3.90 8.06 -2.91 -0.02 3.88 16 37 H 0.18 4.05 5.50 -2.91 -0.02 4.03 16 38 H 0.12 2.46 3.92 -2.38 -0.01 2.45 16 39 H 0.08 2.20 7.17 -2.39 -0.02 2.19 16 40 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 41 H 0.01 0.60 8.14 -2.38 -0.02 0.58 16 42 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.11 1.83 7.38 -2.39 -0.02 1.81 16 44 H 0.11 1.87 6.13 -2.39 -0.01 1.85 16 45 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.11 2.43 7.17 -2.39 -0.02 2.42 16 47 H 0.06 2.40 5.64 -2.39 -0.01 2.39 16 48 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 49 H 0.16 5.86 8.05 -2.91 -0.02 5.84 16 Total: -1.00 -76.92 373.24 1.89 -75.03 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: 0.95 Total: 23.91 kcal Atomic # 6 Polarization: 15.26 SS G_CDS: 6.62 Total: 21.88 kcal Atomic # 7 Polarization: -125.54 SS G_CDS: -6.42 Total: -131.96 kcal Atomic # 8 Polarization: -33.70 SS G_CDS: -0.96 Total: -34.65 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.70 Total: 45.79 kcal Total: -76.92 1.89 -75.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045790936.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.479 kcal (2) G-P(sol) polarization free energy of solvation -76.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds