Wall clock time and date at job start Wed Apr 1 2020 05:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42894 * 109.47345 * 2 1 4 4 C 1.35430 * 117.00290 * 180.02562 * 3 2 1 5 5 N 1.32237 * 119.79482 * 359.97363 * 4 3 2 6 6 C 1.31876 * 121.79636 * 179.97438 * 5 4 3 7 7 C 1.38349 * 121.19006 * 359.97438 * 6 5 4 8 8 C 1.38345 * 119.45794 * 359.78092 * 7 6 5 9 9 C 1.39987 * 118.34217 * 0.47865 * 8 7 6 10 10 C 1.47525 * 120.59531 * 179.75068 * 9 8 7 11 11 O 1.21590 * 120.00393 * 209.45990 * 10 9 8 12 12 N 1.34781 * 119.99874 * 29.45908 * 10 9 8 13 13 C 1.44787 * 120.18276 * 174.17103 * 12 10 9 14 14 C 1.51515 * 112.15435 * 264.50487 * 13 12 10 15 15 C 1.51314 * 113.24978 * 285.41410 * 14 13 12 16 16 H 1.09003 * 111.31807 * 186.10566 * 15 14 13 17 17 C 1.54722 * 106.48391 * 307.66226 * 15 14 13 18 18 C 1.54237 * 104.37539 * 89.12040 * 17 15 14 19 19 C 1.50872 * 105.27086 * 11.56145 * 18 17 15 20 20 H 1.09002 * 106.52415 * 121.73339 * 19 18 17 21 21 C 1.49720 * 120.10581 * 354.02629 * 12 10 9 22 22 N 1.48057 * 109.90860 * 7.87437 * 19 18 17 23 23 C 1.36939 * 127.83916 * 155.17921 * 22 19 18 24 24 H 1.08003 * 120.00014 * 149.19958 * 23 22 19 25 25 C 1.38808 * 120.00132 * 329.19747 * 23 22 19 26 26 N 1.31623 * 120.00206 * 157.00407 * 25 23 22 27 27 Si 1.86802 * 120.00119 * 337.00652 * 25 23 22 28 28 H 1.48498 * 109.46851 * 95.04146 * 27 25 23 29 29 H 1.48494 * 109.46995 * 215.04276 * 27 25 23 30 30 H 1.48502 * 109.46748 * 335.04481 * 27 25 23 31 31 H 1.08999 * 109.47294 * 59.99734 * 1 2 3 32 32 H 1.08994 * 109.47466 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46932 * 300.00258 * 1 2 3 34 34 H 1.09003 * 109.46932 * 239.99742 * 2 1 3 35 35 H 1.08998 * 109.46813 * 120.00051 * 2 1 3 36 36 H 1.08002 * 119.40606 * 180.02562 * 6 5 4 37 37 H 1.08005 * 120.27744 * 180.02562 * 7 6 5 38 38 H 1.08000 * 120.82960 * 180.23474 * 8 7 6 39 39 H 1.08994 * 108.93335 * 143.84318 * 13 12 10 40 40 H 1.08995 * 108.92931 * 25.16210 * 13 12 10 41 41 H 1.09002 * 108.72790 * 46.38229 * 14 13 12 42 42 H 1.08996 * 108.73054 * 164.56388 * 14 13 12 43 43 H 1.08997 * 110.45770 * 207.84398 * 17 15 14 44 44 H 1.09004 * 110.45119 * 330.40321 * 17 15 14 45 45 H 1.08996 * 110.28595 * 130.50852 * 18 17 15 46 46 H 1.08996 * 110.28562 * 252.61338 * 18 17 15 47 47 H 1.08998 * 109.53199 * 30.88667 * 21 12 10 48 48 H 1.08998 * 109.68476 * 270.61839 * 21 12 10 49 49 H 0.96999 * 120.00230 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3490 1.5247 -0.0005 5 7 4.1508 0.4731 -0.0005 6 6 5.4634 0.6001 -0.0015 7 6 6.0625 1.8472 -0.0032 8 6 5.2714 2.9821 -0.0084 9 6 3.8807 2.8227 -0.0016 10 6 2.9901 3.9989 -0.0012 11 8 1.8945 3.9318 0.5219 12 7 3.3910 5.1478 -0.5807 13 6 2.4755 6.2637 -0.6945 14 6 1.7827 6.2993 -2.0416 15 6 2.6819 6.7707 -3.1635 16 1 2.1267 6.8868 -4.0943 17 6 3.2935 8.1145 -2.7006 18 6 4.5818 7.7119 -1.9541 19 6 4.7871 6.2521 -2.2747 20 1 5.7674 6.1728 -2.7448 21 6 4.7868 5.2765 -1.1067 22 7 3.8167 5.8211 -3.3065 23 6 3.9369 4.7829 -4.1914 24 1 3.0564 4.2566 -4.5291 25 6 5.1904 4.4071 -4.6543 26 7 5.3840 3.1894 -5.1149 27 14 6.6025 5.6295 -4.6235 28 1 7.3956 5.4385 -3.3827 29 1 7.4732 5.4098 -5.8062 30 1 6.0613 7.0120 -4.6572 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 6.0819 -0.2853 -0.0019 37 1 7.1391 1.9341 -0.0044 38 1 5.7157 3.9664 -0.0136 39 1 3.0304 7.1918 -0.5577 40 1 1.7217 6.1840 0.0887 41 1 1.4249 5.2971 -2.2776 42 1 0.9259 6.9699 -1.9769 43 1 3.5315 8.7409 -3.5603 44 1 2.6098 8.6326 -2.0282 45 1 5.4262 8.3001 -2.3134 46 1 4.4547 7.8487 -0.8803 47 1 5.1399 4.3024 -1.4451 48 1 5.4427 5.6492 -0.3200 49 1 6.2598 2.9269 -5.4387 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045886024.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:21 Heat of formation + Delta-G solvation = 11.078808 kcal Electronic energy + Delta-G solvation = -33001.655409 eV Core-core repulsion = 28930.600521 eV Total energy + Delta-G solvation = -4071.054888 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.23767 -41.24798 -39.54344 -39.06617 -35.95071 -35.11211 -34.05723 -33.17297 -33.04376 -31.91133 -31.10765 -28.95983 -27.79463 -26.08589 -25.57558 -24.89450 -23.52114 -23.17333 -21.85140 -21.23773 -20.20494 -19.47601 -19.03092 -18.33634 -17.71815 -17.45352 -17.32887 -16.88161 -16.67802 -16.16715 -15.97705 -15.52106 -15.37004 -15.07209 -14.86543 -14.77104 -14.57846 -14.34655 -13.99961 -13.80321 -13.45191 -13.38745 -13.38161 -13.20083 -13.06785 -13.00119 -12.77037 -12.52881 -12.50578 -12.39912 -12.12048 -11.81451 -11.74837 -11.65327 -11.37156 -11.22094 -10.90014 -10.84795 -10.63005 -10.45597 -9.70805 -9.43221 -8.85047 -8.18294 -5.49188 -0.26733 0.22499 1.28035 1.42753 1.53693 1.69765 1.98130 2.10757 2.42115 2.76935 2.97421 3.18124 3.33958 3.53531 3.70004 3.81534 3.86867 3.96603 3.99021 4.05095 4.07994 4.12954 4.20482 4.25972 4.33024 4.35431 4.45290 4.46664 4.54379 4.60117 4.74606 4.75371 4.82771 4.85024 4.85213 4.98803 5.04034 5.07038 5.10633 5.12473 5.19225 5.31937 5.38753 5.41458 5.53682 5.72491 5.80826 6.14657 6.19602 6.35503 6.72162 6.79269 7.18955 7.52687 8.26250 9.03083 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010945 B = 0.005207 C = 0.004408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2557.738900 B = 5375.719454 C = 6349.855033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.058 3.942 3 O -0.309 6.309 4 C 0.344 3.656 5 N -0.559 5.559 6 C 0.156 3.844 7 C -0.213 4.213 8 C -0.026 4.026 9 C -0.231 4.231 10 C 0.563 3.437 11 O -0.572 6.572 12 N -0.581 5.581 13 C 0.115 3.885 14 C -0.137 4.137 15 C 0.137 3.863 16 H 0.055 0.945 17 C -0.120 4.120 18 C -0.117 4.117 19 C 0.118 3.882 20 H 0.027 0.973 21 C 0.089 3.911 22 N -0.605 5.605 23 C -0.223 4.223 24 H 0.024 0.976 25 C -0.021 4.021 26 N -0.950 5.950 27 Si 0.945 3.055 28 H -0.259 1.259 29 H -0.314 1.314 30 H -0.256 1.256 31 H 0.050 0.950 32 H 0.110 0.890 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.202 0.798 37 H 0.182 0.818 38 H 0.177 0.823 39 H 0.116 0.884 40 H 0.070 0.930 41 H 0.008 0.992 42 H 0.091 0.909 43 H 0.066 0.934 44 H 0.105 0.895 45 H 0.082 0.918 46 H 0.106 0.894 47 H 0.072 0.928 48 H 0.111 0.889 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.035 4.072 13.612 14.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.016 4.016 3 O -0.215 6.215 4 C 0.165 3.835 5 N -0.284 5.284 6 C 0.000 4.000 7 C -0.232 4.232 8 C -0.051 4.051 9 C -0.237 4.237 10 C 0.352 3.648 11 O -0.453 6.453 12 N -0.312 5.312 13 C -0.007 4.007 14 C -0.177 4.177 15 C 0.031 3.969 16 H 0.073 0.927 17 C -0.159 4.159 18 C -0.155 4.155 19 C 0.012 3.988 20 H 0.044 0.956 21 C -0.034 4.034 22 N -0.329 5.329 23 C -0.352 4.352 24 H 0.042 0.958 25 C -0.217 4.217 26 N -0.595 5.595 27 Si 0.773 3.227 28 H -0.186 1.186 29 H -0.244 1.244 30 H -0.180 1.180 31 H 0.069 0.931 32 H 0.129 0.871 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.219 0.781 37 H 0.199 0.801 38 H 0.194 0.806 39 H 0.134 0.866 40 H 0.089 0.911 41 H 0.027 0.973 42 H 0.110 0.890 43 H 0.085 0.915 44 H 0.124 0.876 45 H 0.100 0.900 46 H 0.124 0.876 47 H 0.090 0.910 48 H 0.128 0.872 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.918 3.226 13.698 14.103 hybrid contribution 0.745 0.059 -1.053 1.291 sum 1.663 3.285 12.646 13.171 Atomic orbital electron populations 1.21804 0.91280 1.04302 1.02711 1.22853 0.96408 0.80121 1.02250 1.86389 1.16750 1.31978 1.86381 1.19960 0.84636 0.89294 0.89573 1.67457 1.07905 1.31777 1.21211 1.23365 0.88531 0.99538 0.88600 1.22392 1.03401 0.92071 1.05349 1.22653 0.90434 1.02701 0.89321 1.20064 0.95806 0.92111 1.15692 1.18065 0.85652 0.82904 0.78202 1.90691 1.23220 1.83655 1.47746 1.47991 1.13732 1.12997 1.56519 1.21054 0.93337 0.89848 0.96475 1.21856 0.99588 0.99809 0.96453 1.21488 0.89861 0.89969 0.95604 0.92708 1.22632 0.96907 0.95752 1.00575 1.21898 0.99214 0.92134 1.02255 1.21123 0.93980 0.94676 0.89009 0.95559 1.23355 0.82005 1.01334 0.96684 1.45165 1.19389 1.33169 1.35145 1.18068 0.92754 1.05434 1.18936 0.95834 1.25849 1.00268 0.97463 0.98144 1.70028 1.23964 1.18419 1.47076 0.85757 0.79022 0.81315 0.76592 1.18552 1.24369 1.18044 0.93060 0.87140 0.91774 0.92417 0.90734 0.78095 0.80055 0.80578 0.86590 0.91116 0.97275 0.89046 0.91526 0.87641 0.89966 0.87601 0.91012 0.87183 0.92847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 10.28 71.98 0.74 -2.99 16 2 C 0.06 1.87 6.03 71.98 0.43 2.30 16 3 O -0.31 -12.95 8.63 -69.02 -0.60 -13.54 16 4 C 0.34 14.03 7.48 85.13 0.64 14.66 16 5 N -0.56 -19.56 9.21 -308.01 -2.84 -22.40 16 6 C 0.16 4.24 11.17 84.71 0.95 5.19 16 7 C -0.21 -5.46 10.09 22.32 0.23 -5.24 16 8 C -0.03 -0.81 7.61 22.72 0.17 -0.64 16 9 C -0.23 -9.14 5.59 -19.91 -0.11 -9.25 16 10 C 0.56 23.67 7.38 86.69 0.64 24.31 16 11 O -0.57 -27.04 15.23 14.23 0.22 -26.83 16 12 N -0.58 -21.13 2.86 -825.78 -2.36 -23.48 16 13 C 0.11 3.62 5.19 86.21 0.45 4.07 16 14 C -0.14 -4.76 5.01 29.56 0.15 -4.61 16 15 C 0.14 4.99 4.08 44.61 0.18 5.17 16 16 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 17 C -0.12 -3.09 6.02 31.60 0.19 -2.90 16 18 C -0.12 -2.96 5.79 30.32 0.18 -2.79 16 19 C 0.12 4.21 2.02 43.73 0.09 4.30 16 20 H 0.03 1.04 2.86 -2.39 -0.01 1.03 16 21 C 0.09 2.97 4.32 85.48 0.37 3.34 16 22 N -0.60 -27.16 2.27 -650.46 -1.48 -28.63 16 23 C -0.22 -12.70 10.62 84.03 0.89 -11.80 16 24 H 0.02 1.58 8.06 -2.91 -0.02 1.56 16 25 C -0.02 -1.21 5.44 84.86 0.46 -0.75 16 26 N -0.95 -58.67 13.97 21.65 0.30 -58.37 16 27 Si 0.94 43.41 24.95 68.60 1.71 45.12 16 28 H -0.26 -10.67 6.91 99.48 0.69 -9.98 16 29 H -0.31 -15.05 7.11 99.48 0.71 -14.34 16 30 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 31 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.06 1.88 8.10 -2.39 -0.02 1.86 16 35 H 0.07 2.14 8.10 -2.39 -0.02 2.12 16 36 H 0.20 3.58 8.06 -2.91 -0.02 3.56 16 37 H 0.18 3.08 8.06 -2.91 -0.02 3.06 16 38 H 0.18 4.58 4.47 -2.91 -0.01 4.57 16 39 H 0.12 2.75 3.93 -2.39 -0.01 2.74 16 40 H 0.07 2.31 7.16 -2.39 -0.02 2.29 16 41 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 42 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 43 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.11 1.97 7.38 -2.39 -0.02 1.95 16 45 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 46 H 0.11 1.97 6.15 -2.39 -0.01 1.95 16 47 H 0.07 2.82 4.97 -2.39 -0.01 2.81 16 48 H 0.11 2.57 7.32 -2.39 -0.02 2.56 16 49 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -82.81 370.39 2.56 -80.26 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: 0.96 Total: 25.50 kcal Atomic # 6 Polarization: 15.73 SS G_CDS: 6.64 Total: 22.37 kcal Atomic # 7 Polarization: -126.52 SS G_CDS: -6.37 Total: -132.89 kcal Atomic # 8 Polarization: -39.99 SS G_CDS: -0.38 Total: -40.37 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 1.71 Total: 45.12 kcal Total: -82.81 2.56 -80.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045886024.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.334 kcal (2) G-P(sol) polarization free energy of solvation -82.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds