Wall clock time and date at job start Wed Apr 1 2020 05:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42904 * 109.46959 * 2 1 4 4 C 1.35504 * 116.99661 * 180.02562 * 3 2 1 5 5 C 1.39174 * 119.52061 * 180.02562 * 4 3 2 6 6 C 1.37959 * 119.25856 * 179.97438 * 5 4 3 7 7 C 1.40283 * 118.35838 * 0.02562 * 6 5 4 8 8 C 1.47611 * 120.49545 * 180.02562 * 7 6 5 9 9 O 1.21582 * 120.00442 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99808 * 180.02562 * 8 7 6 11 11 C 1.46507 * 119.99975 * 179.97438 * 10 8 7 12 12 H 1.08995 * 109.32245 * 35.35476 * 11 10 8 13 13 C 1.53031 * 109.32273 * 154.99606 * 11 10 8 14 14 C 1.53970 * 108.82242 * 175.67822 * 13 11 10 15 15 H 1.09004 * 112.99572 * 168.09156 * 14 13 11 16 16 C 1.55428 * 106.41600 * 293.81971 * 14 13 11 17 17 C 1.55175 * 100.35463 * 73.38102 * 16 14 13 18 18 H 1.08998 * 112.48412 * 162.67608 * 17 16 14 19 19 C 1.52988 * 109.32505 * 275.88731 * 11 10 8 20 20 N 1.47785 * 104.25265 * 40.55061 * 17 16 14 21 21 C 1.36946 * 125.85269 * 153.55635 * 20 17 16 22 22 H 1.07991 * 120.00033 * 353.89226 * 21 20 17 23 23 C 1.38810 * 119.99438 * 173.89499 * 21 20 17 24 24 N 1.31612 * 120.00745 * 6.79379 * 23 21 20 25 25 Si 1.86804 * 119.99613 * 186.79243 * 23 21 20 26 26 H 1.48497 * 109.47029 * 94.98631 * 25 23 21 27 27 H 1.48497 * 109.47194 * 214.98739 * 25 23 21 28 28 H 1.48501 * 109.47151 * 334.98783 * 25 23 21 29 29 C 1.47078 * 108.28889 * 333.53599 * 20 17 16 30 30 C 1.39522 * 119.00239 * 359.97438 * 7 6 5 31 31 N 1.31667 * 120.63158 * 359.72289 * 30 7 6 32 32 H 1.08997 * 109.47113 * 60.00104 * 1 2 3 33 33 H 1.08997 * 109.47046 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.46817 * 300.00198 * 1 2 3 35 35 H 1.09000 * 109.47608 * 119.99886 * 2 1 3 36 36 H 1.08998 * 109.47370 * 240.00569 * 2 1 3 37 37 H 1.07991 * 120.36874 * 359.97438 * 5 4 3 38 38 H 1.07999 * 120.81562 * 179.97438 * 6 5 4 39 39 H 0.97000 * 120.00461 * 359.97438 * 10 8 7 40 40 H 1.08997 * 109.57699 * 295.47878 * 13 11 10 41 41 H 1.09002 * 109.57936 * 55.74602 * 13 11 10 42 42 H 1.09006 * 111.23826 * 191.15493 * 16 14 13 43 43 H 1.09002 * 111.23693 * 315.60451 * 16 14 13 44 44 H 1.09004 * 109.52920 * 304.52892 * 19 11 10 45 45 H 1.08997 * 109.53606 * 64.75092 * 19 11 10 46 46 H 0.96997 * 120.00760 * 180.02562 * 24 23 21 47 47 H 1.09004 * 109.97518 * 241.74592 * 29 20 17 48 48 H 1.08997 * 110.01123 * 120.48308 * 29 20 17 49 49 H 1.08009 * 119.68205 * 179.97438 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3497 1.5248 -0.0005 5 6 3.8709 2.8153 0.0000 6 6 5.2394 2.9897 0.0000 7 6 6.0565 1.8494 -0.0011 8 6 7.5267 1.9814 -0.0006 9 8 8.0381 3.0844 0.0003 10 7 8.3021 0.8790 -0.0022 11 6 9.7614 1.0099 -0.0023 12 1 10.0457 1.8769 0.5940 13 6 10.3827 -0.2492 0.6064 14 6 11.9155 -0.1471 0.5016 15 1 12.4339 -0.9019 1.0930 16 6 12.2561 -0.1914 -1.0142 17 6 11.7908 1.2246 -1.4461 18 1 12.2064 1.5246 -2.4080 19 6 10.2521 1.2045 -1.4382 20 7 12.2296 2.1041 -0.3424 21 6 12.5173 3.4389 -0.4465 22 1 12.5262 3.9154 -1.4156 23 6 12.7975 4.1793 0.6937 24 7 12.9187 3.5759 1.8571 25 14 13.0028 6.0324 0.5769 26 1 11.7118 6.6943 0.8939 27 1 14.0380 6.4777 1.5440 28 1 13.4216 6.3982 -0.8000 29 6 12.3038 1.3000 0.8869 30 6 5.4586 0.5888 -0.0016 31 7 4.1475 0.4682 0.0044 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 -0.3633 0.5139 0.8900 35 1 1.8934 -0.5138 0.8900 36 1 1.8934 -0.5137 -0.8900 37 1 3.2114 3.6704 0.0004 38 1 5.6709 3.9798 -0.0001 39 1 7.8942 -0.0010 -0.0033 40 1 10.0928 -0.3297 1.6540 41 1 10.0352 -1.1275 0.0625 42 1 13.3264 -0.3213 -1.1748 43 1 11.6854 -0.9672 -1.5247 44 1 9.8951 0.3833 -2.0597 45 1 9.8733 2.1493 -1.8279 46 1 13.1141 4.0934 2.6539 47 1 11.6053 1.6881 1.6284 48 1 13.3182 1.3200 1.2850 49 1 6.0772 -0.2966 -0.0029 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047080865.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:32 Heat of formation + Delta-G solvation = -4.826087 kcal Electronic energy + Delta-G solvation = -30594.894574 eV Core-core repulsion = 26523.149997 eV Total energy + Delta-G solvation = -4071.744576 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.03577 -39.99716 -38.87780 -37.77125 -34.61595 -32.91567 -32.70916 -32.39467 -30.80079 -30.61120 -29.26193 -28.12499 -25.28209 -24.64520 -24.40680 -23.10511 -22.65267 -21.65475 -20.34150 -19.43106 -18.94820 -18.72580 -17.48287 -17.23797 -16.83938 -16.64229 -15.68889 -15.12318 -14.86077 -14.64547 -14.43050 -14.28108 -14.12474 -13.92912 -13.62451 -13.39444 -13.10177 -12.93954 -12.74408 -12.61715 -12.60335 -11.98725 -11.93392 -11.79837 -11.73790 -11.54444 -11.22901 -11.09614 -10.70975 -10.63685 -10.51502 -10.19922 -10.18279 -9.93686 -9.82427 -9.72153 -9.64365 -9.42307 -9.28401 -8.83106 -8.54948 -8.48266 -6.74152 -5.62523 -2.93594 0.57472 0.96370 2.65478 2.96571 3.37238 3.49690 3.55423 3.56506 3.76737 3.89547 4.57602 4.60044 4.63050 4.63548 4.68590 4.83660 4.92287 5.03458 5.22768 5.25535 5.28769 5.35019 5.44020 5.45306 5.54749 5.59418 5.66420 5.68245 5.89347 5.90881 5.93930 6.05957 6.08430 6.09778 6.12304 6.15474 6.25358 6.58894 6.64170 6.69494 6.88421 6.88944 6.91001 7.01386 7.09434 7.45776 7.62182 7.67706 7.79838 7.90841 8.33979 8.52154 9.31437 9.92129 10.58291 11.49896 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015383 B = 0.002620 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.744103 B =10686.270828 C =11957.392171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.065 3.935 3 O -0.305 6.305 4 C 0.337 3.663 5 C -0.196 4.196 6 C 0.015 3.985 7 C -0.215 4.215 8 C 0.557 3.443 9 O -0.517 6.517 10 N -0.723 5.723 11 C 0.147 3.853 12 H 0.117 0.883 13 C -0.112 4.112 14 C -0.119 4.119 15 H 0.082 0.918 16 C -0.128 4.128 17 C 0.157 3.843 18 H 0.065 0.935 19 C -0.135 4.135 20 N -0.595 5.595 21 C -0.221 4.221 22 H 0.076 0.924 23 C -0.005 4.005 24 N -0.921 5.921 25 Si 0.907 3.093 26 H -0.289 1.289 27 H -0.293 1.293 28 H -0.282 1.282 29 C 0.179 3.821 30 C 0.174 3.826 31 N -0.545 5.545 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.148 0.852 38 H 0.156 0.844 39 H 0.388 0.612 40 H 0.060 0.940 41 H 0.054 0.946 42 H 0.062 0.938 43 H 0.059 0.941 44 H 0.043 0.957 45 H 0.060 0.940 46 H 0.250 0.750 47 H 0.049 0.951 48 H 0.040 0.960 49 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.875 -11.809 -3.669 23.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.011 4.011 3 O -0.212 6.212 4 C 0.159 3.841 5 C -0.217 4.217 6 C -0.010 4.010 7 C -0.221 4.221 8 C 0.342 3.658 9 O -0.392 6.392 10 N -0.373 5.373 11 C 0.044 3.956 12 H 0.135 0.865 13 C -0.150 4.150 14 C -0.138 4.138 15 H 0.100 0.900 16 C -0.167 4.167 17 C 0.049 3.951 18 H 0.083 0.917 19 C -0.176 4.176 20 N -0.320 5.320 21 C -0.349 4.349 22 H 0.094 0.906 23 C -0.201 4.201 24 N -0.569 5.569 25 Si 0.738 3.262 26 H -0.216 1.216 27 H -0.220 1.220 28 H -0.208 1.208 29 C 0.055 3.945 30 C 0.016 3.984 31 N -0.268 5.268 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.166 0.834 38 H 0.174 0.826 39 H 0.222 0.778 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.062 0.938 45 H 0.079 0.921 46 H 0.061 0.939 47 H 0.067 0.933 48 H 0.058 0.942 49 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -20.038 -11.432 -3.495 23.333 hybrid contribution 0.188 1.082 0.025 1.099 sum -19.850 -10.349 -3.470 22.653 Atomic orbital electron populations 1.21828 0.92933 1.02980 1.03366 1.22654 0.94802 0.80853 1.02750 1.86211 1.16839 1.30988 1.87115 1.20015 0.83980 0.90048 0.90086 1.21059 0.95604 0.95813 1.09185 1.21601 0.91430 0.99826 0.88181 1.21007 0.95309 0.94999 1.10821 1.17865 0.85417 0.85143 0.77348 1.90900 1.74524 1.25437 1.48350 1.46141 1.08152 1.07745 1.75277 1.21237 0.75746 1.00402 0.98187 0.86502 1.21965 0.96648 0.96297 1.00108 1.22832 0.93757 1.00777 0.96476 0.89968 1.22990 1.00379 0.97407 0.95887 1.21512 0.90986 0.89691 0.92955 0.91708 1.22597 0.99339 1.00366 0.95326 1.44610 1.78362 1.05529 1.03462 1.19000 1.40088 0.82697 0.93155 0.90617 1.24742 1.02095 0.97827 0.95451 1.69944 1.55136 1.33477 0.98315 0.86172 0.77282 0.85837 0.76940 1.21594 1.22002 1.20769 1.21320 1.00026 0.84206 0.88969 1.22594 0.89157 0.96326 0.90287 1.67303 1.06300 1.32863 1.20362 0.91618 0.90213 0.91600 0.91400 0.91426 0.83447 0.82626 0.77825 0.92113 0.92765 0.91892 0.92215 0.93836 0.92147 0.93932 0.93274 0.94154 0.82073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 10.28 37.16 0.38 -0.47 16 2 C 0.06 0.51 6.02 37.16 0.22 0.74 16 3 O -0.30 -3.19 10.10 -18.20 -0.18 -3.37 16 4 C 0.34 3.87 7.49 -16.96 -0.13 3.75 16 5 C -0.20 -2.13 10.02 -39.34 -0.39 -2.52 16 6 C 0.02 0.19 9.70 -38.92 -0.38 -0.19 16 7 C -0.22 -2.86 5.89 -104.83 -0.62 -3.47 16 8 C 0.56 9.33 7.72 -12.44 -0.10 9.23 16 9 O -0.52 -11.32 16.08 5.29 0.09 -11.24 16 10 N -0.72 -10.69 5.02 -54.81 -0.28 -10.96 16 11 C 0.15 2.66 2.07 -67.92 -0.14 2.52 16 12 H 0.12 2.81 5.39 -51.93 -0.28 2.53 16 13 C -0.11 -1.73 4.95 -26.21 -0.13 -1.86 16 14 C -0.12 -2.09 4.33 -87.93 -0.38 -2.47 16 15 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 16 C -0.13 -2.15 6.18 -24.29 -0.15 -2.30 16 17 C 0.16 3.16 4.30 -65.62 -0.28 2.88 16 18 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 19 C -0.14 -2.50 5.27 -26.28 -0.14 -2.64 16 20 N -0.60 -14.84 2.43 -161.37 -0.39 -15.23 16 21 C -0.22 -6.24 10.28 -15.06 -0.15 -6.39 16 22 H 0.08 2.10 7.84 -52.49 -0.41 1.69 16 23 C -0.01 -0.15 5.48 -17.43 -0.10 -0.24 16 24 N -0.92 -27.43 10.40 55.49 0.58 -26.86 16 25 Si 0.91 23.12 29.56 -169.99 -5.02 18.10 16 26 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 27 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 28 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 29 C 0.18 4.23 4.10 -2.83 -0.01 4.22 16 30 C 0.17 1.92 10.71 -17.14 -0.18 1.74 16 31 N -0.54 -6.28 9.18 -12.96 -0.12 -6.39 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 36 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 37 H 0.15 1.27 8.06 -52.49 -0.42 0.84 16 38 H 0.16 1.92 7.73 -52.49 -0.41 1.52 16 39 H 0.39 4.19 6.65 -40.82 -0.27 3.92 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.05 0.68 7.98 -51.93 -0.41 0.27 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.06 0.84 7.75 -51.93 -0.40 0.44 16 44 H 0.04 0.68 8.00 -51.93 -0.42 0.27 16 45 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 46 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 47 H 0.05 1.30 6.02 -51.93 -0.31 0.99 16 48 H 0.04 1.07 7.56 -51.93 -0.39 0.68 16 49 H 0.16 1.31 6.41 -52.48 -0.34 0.97 16 LS Contribution 387.92 15.07 5.85 5.85 Total: -1.00 -33.98 387.92 -9.58 -43.56 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -7.42 Total: 4.04 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: -2.67 Total: 2.51 kcal Atomic # 7 Polarization: -59.24 SS G_CDS: -0.21 Total: -59.45 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -0.10 Total: -14.61 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.02 Total: 18.10 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.98 -9.58 -43.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047080865.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.738 kcal (2) G-P(sol) polarization free energy of solvation -33.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds