Wall clock time and date at job start Wed Apr 1 2020 05:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42904 * 109.46959 * 2 1 4 4 C 1.35504 * 116.99661 * 180.02562 * 3 2 1 5 5 C 1.39174 * 119.52061 * 180.02562 * 4 3 2 6 6 C 1.37959 * 119.25856 * 179.97438 * 5 4 3 7 7 C 1.40283 * 118.35838 * 0.02562 * 6 5 4 8 8 C 1.47611 * 120.49545 * 180.02562 * 7 6 5 9 9 O 1.21582 * 120.00442 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99808 * 180.02562 * 8 7 6 11 11 C 1.46507 * 119.99975 * 179.97438 * 10 8 7 12 12 H 1.08995 * 109.32245 * 35.35476 * 11 10 8 13 13 C 1.53031 * 109.32273 * 154.99606 * 11 10 8 14 14 C 1.53970 * 108.82242 * 175.67822 * 13 11 10 15 15 H 1.09004 * 112.99572 * 168.09156 * 14 13 11 16 16 C 1.55428 * 106.41600 * 293.81971 * 14 13 11 17 17 C 1.55175 * 100.35463 * 73.38102 * 16 14 13 18 18 H 1.08998 * 112.48412 * 162.67608 * 17 16 14 19 19 C 1.52988 * 109.32505 * 275.88731 * 11 10 8 20 20 N 1.47785 * 104.25265 * 40.55061 * 17 16 14 21 21 C 1.36946 * 125.85269 * 153.55635 * 20 17 16 22 22 H 1.07991 * 120.00033 * 353.89226 * 21 20 17 23 23 C 1.38810 * 119.99438 * 173.89499 * 21 20 17 24 24 N 1.31612 * 120.00745 * 6.79379 * 23 21 20 25 25 Si 1.86804 * 119.99613 * 186.79243 * 23 21 20 26 26 H 1.48497 * 109.47029 * 94.98631 * 25 23 21 27 27 H 1.48497 * 109.47194 * 214.98739 * 25 23 21 28 28 H 1.48501 * 109.47151 * 334.98783 * 25 23 21 29 29 C 1.47078 * 108.28889 * 333.53599 * 20 17 16 30 30 C 1.39522 * 119.00239 * 359.97438 * 7 6 5 31 31 N 1.31667 * 120.63158 * 359.72289 * 30 7 6 32 32 H 1.08997 * 109.47113 * 60.00104 * 1 2 3 33 33 H 1.08997 * 109.47046 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.46817 * 300.00198 * 1 2 3 35 35 H 1.09000 * 109.47608 * 119.99886 * 2 1 3 36 36 H 1.08998 * 109.47370 * 240.00569 * 2 1 3 37 37 H 1.07991 * 120.36874 * 359.97438 * 5 4 3 38 38 H 1.07999 * 120.81562 * 179.97438 * 6 5 4 39 39 H 0.97000 * 120.00461 * 359.97438 * 10 8 7 40 40 H 1.08997 * 109.57699 * 295.47878 * 13 11 10 41 41 H 1.09002 * 109.57936 * 55.74602 * 13 11 10 42 42 H 1.09006 * 111.23826 * 191.15493 * 16 14 13 43 43 H 1.09002 * 111.23693 * 315.60451 * 16 14 13 44 44 H 1.09004 * 109.52920 * 304.52892 * 19 11 10 45 45 H 1.08997 * 109.53606 * 64.75092 * 19 11 10 46 46 H 0.96997 * 120.00760 * 180.02562 * 24 23 21 47 47 H 1.09004 * 109.97518 * 241.74592 * 29 20 17 48 48 H 1.08997 * 110.01123 * 120.48308 * 29 20 17 49 49 H 1.08009 * 119.68205 * 179.97438 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3497 1.5248 -0.0005 5 6 3.8709 2.8153 0.0000 6 6 5.2394 2.9897 0.0000 7 6 6.0565 1.8494 -0.0011 8 6 7.5267 1.9814 -0.0006 9 8 8.0381 3.0844 0.0003 10 7 8.3021 0.8790 -0.0022 11 6 9.7614 1.0099 -0.0023 12 1 10.0457 1.8769 0.5940 13 6 10.3827 -0.2492 0.6064 14 6 11.9155 -0.1471 0.5016 15 1 12.4339 -0.9019 1.0930 16 6 12.2561 -0.1914 -1.0142 17 6 11.7908 1.2246 -1.4461 18 1 12.2064 1.5246 -2.4080 19 6 10.2521 1.2045 -1.4382 20 7 12.2296 2.1041 -0.3424 21 6 12.5173 3.4389 -0.4465 22 1 12.5262 3.9154 -1.4156 23 6 12.7975 4.1793 0.6937 24 7 12.9187 3.5759 1.8571 25 14 13.0028 6.0324 0.5769 26 1 11.7118 6.6943 0.8939 27 1 14.0380 6.4777 1.5440 28 1 13.4216 6.3982 -0.8000 29 6 12.3038 1.3000 0.8869 30 6 5.4586 0.5888 -0.0016 31 7 4.1475 0.4682 0.0044 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 -0.3633 0.5139 0.8900 35 1 1.8934 -0.5138 0.8900 36 1 1.8934 -0.5137 -0.8900 37 1 3.2114 3.6704 0.0004 38 1 5.6709 3.9798 -0.0001 39 1 7.8942 -0.0010 -0.0033 40 1 10.0928 -0.3297 1.6540 41 1 10.0352 -1.1275 0.0625 42 1 13.3264 -0.3213 -1.1748 43 1 11.6854 -0.9672 -1.5247 44 1 9.8951 0.3833 -2.0597 45 1 9.8733 2.1493 -1.8279 46 1 13.1141 4.0934 2.6539 47 1 11.6053 1.6881 1.6284 48 1 13.3182 1.3200 1.2850 49 1 6.0772 -0.2966 -0.0029 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047080865.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:31 Heat of formation + Delta-G solvation = -29.003315 kcal Electronic energy + Delta-G solvation = -30595.942977 eV Core-core repulsion = 26523.149997 eV Total energy + Delta-G solvation = -4072.792980 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.02777 -41.35855 -40.14134 -38.79467 -36.16266 -34.74419 -33.67137 -33.17701 -32.35158 -31.80140 -30.80700 -29.55123 -27.18440 -25.54152 -25.32462 -24.90505 -23.46815 -22.82822 -21.69447 -21.18319 -20.26846 -19.68376 -18.96732 -18.63728 -18.12326 -17.37922 -17.10364 -16.63446 -16.26540 -16.07021 -15.82894 -15.43588 -15.20848 -15.08228 -14.85971 -14.74365 -14.24336 -14.11856 -13.86274 -13.74782 -13.44111 -13.41634 -13.32298 -13.25109 -13.19140 -13.03076 -12.62804 -12.51953 -12.50683 -12.12765 -11.87084 -11.73936 -11.61570 -11.48794 -11.16502 -11.13005 -11.12515 -10.89842 -10.66457 -10.64877 -10.05829 -9.63613 -8.79829 -7.83247 -5.13057 -0.40102 0.06029 1.38184 1.43916 1.48976 1.81060 1.88319 2.13800 2.49410 2.72825 3.07248 3.35863 3.59863 3.68681 3.75385 3.85965 3.89150 3.92978 4.00436 4.09904 4.15097 4.20165 4.41084 4.45648 4.46662 4.49762 4.55668 4.63980 4.64816 4.70693 4.83377 4.85379 4.87550 4.96192 5.01537 5.13574 5.18599 5.23512 5.26169 5.33006 5.37170 5.42716 5.51588 5.53426 5.67920 5.77702 5.86893 6.08819 6.25401 6.54932 6.61100 7.16089 7.29911 7.84994 8.49080 9.27258 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015383 B = 0.002620 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.744103 B =10686.270828 C =11957.392171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.058 3.942 3 O -0.310 6.310 4 C 0.336 3.664 5 C -0.193 4.193 6 C 0.006 3.994 7 C -0.233 4.233 8 C 0.556 3.444 9 O -0.583 6.583 10 N -0.704 5.704 11 C 0.154 3.846 12 H 0.048 0.952 13 C -0.102 4.102 14 C -0.107 4.107 15 H 0.111 0.889 16 C -0.110 4.110 17 C 0.140 3.860 18 H 0.062 0.938 19 C -0.123 4.123 20 N -0.614 5.614 21 C -0.226 4.226 22 H 0.072 0.928 23 C -0.065 4.065 24 N -0.946 5.946 25 Si 0.962 3.038 26 H -0.300 1.300 27 H -0.291 1.291 28 H -0.267 1.267 29 C 0.188 3.812 30 C 0.190 3.810 31 N -0.547 5.547 32 H 0.065 0.935 33 H 0.100 0.900 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.168 0.832 38 H 0.145 0.855 39 H 0.413 0.587 40 H 0.065 0.935 41 H 0.108 0.892 42 H 0.061 0.939 43 H 0.109 0.891 44 H 0.089 0.911 45 H 0.019 0.981 46 H 0.242 0.758 47 H 0.007 0.993 48 H -0.003 1.003 49 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.068 -15.570 -5.028 27.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.017 4.017 3 O -0.216 6.216 4 C 0.158 3.842 5 C -0.213 4.213 6 C -0.019 4.019 7 C -0.239 4.239 8 C 0.344 3.656 9 O -0.463 6.463 10 N -0.355 5.355 11 C 0.049 3.951 12 H 0.066 0.934 13 C -0.140 4.140 14 C -0.126 4.126 15 H 0.129 0.871 16 C -0.148 4.148 17 C 0.033 3.967 18 H 0.080 0.920 19 C -0.164 4.164 20 N -0.339 5.339 21 C -0.356 4.356 22 H 0.090 0.910 23 C -0.258 4.258 24 N -0.596 5.596 25 Si 0.792 3.208 26 H -0.228 1.228 27 H -0.217 1.217 28 H -0.192 1.192 29 C 0.063 3.937 30 C 0.033 3.967 31 N -0.271 5.271 32 H 0.084 0.916 33 H 0.118 0.882 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.186 0.814 38 H 0.163 0.837 39 H 0.252 0.748 40 H 0.084 0.916 41 H 0.126 0.874 42 H 0.080 0.920 43 H 0.127 0.873 44 H 0.107 0.893 45 H 0.038 0.962 46 H 0.052 0.948 47 H 0.025 0.975 48 H 0.015 0.985 49 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -22.270 -15.268 -4.894 27.441 hybrid contribution 0.749 2.245 0.401 2.400 sum -21.520 -13.023 -4.493 25.552 Atomic orbital electron populations 1.21848 0.91072 1.04346 1.03353 1.22908 0.96275 0.79635 1.02837 1.86226 1.16129 1.32674 1.86607 1.20236 0.84569 0.90230 0.89180 1.21192 0.94992 0.96644 1.08520 1.21624 0.92280 0.99482 0.88554 1.20754 0.92980 0.96519 1.13633 1.18396 0.86914 0.84467 0.75850 1.90873 1.75950 1.27991 1.51518 1.45846 1.06807 1.08653 1.74214 1.20867 0.77665 0.99569 0.96955 0.93353 1.21920 0.94534 0.96382 1.01123 1.22795 0.95733 0.96613 0.97487 0.87139 1.22947 1.01122 0.95787 0.94967 1.21877 0.92127 0.91190 0.91491 0.91980 1.22431 0.97825 1.00009 0.96148 1.44845 1.78225 1.05175 1.05623 1.19297 1.38467 0.84919 0.92873 0.91044 1.25469 1.03302 1.01537 0.95508 1.70154 1.56714 1.34214 0.98505 0.85283 0.76495 0.81525 0.77508 1.22764 1.21730 1.19208 1.21070 0.96478 0.88268 0.87921 1.22981 0.89263 0.96230 0.88254 1.67417 1.06248 1.32739 1.20682 0.91581 0.88152 0.91651 0.91349 0.91238 0.81445 0.83696 0.74847 0.91616 0.87368 0.91983 0.87312 0.89274 0.96218 0.94831 0.97459 0.98479 0.78748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.28 71.98 0.74 -0.54 16 2 C 0.06 0.79 6.02 71.98 0.43 1.22 16 3 O -0.31 -5.84 10.10 -88.06 -0.89 -6.73 16 4 C 0.34 7.08 7.49 84.83 0.64 7.72 16 5 C -0.19 -4.00 10.02 22.43 0.22 -3.77 16 6 C 0.01 0.16 9.70 22.70 0.22 0.38 16 7 C -0.23 -6.04 5.89 -20.00 -0.12 -6.16 16 8 C 0.56 18.96 7.72 86.72 0.67 19.63 16 9 O -0.58 -27.43 16.08 -3.97 -0.06 -27.49 16 10 N -0.70 -19.73 5.02 -445.59 -2.24 -21.97 16 11 C 0.15 5.46 2.07 45.00 0.09 5.55 16 12 H 0.05 2.46 5.39 -2.39 -0.01 2.44 16 13 C -0.10 -2.78 4.95 30.93 0.15 -2.63 16 14 C -0.11 -3.50 4.33 -9.05 -0.04 -3.54 16 15 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 16 C -0.11 -3.29 6.18 32.18 0.20 -3.09 16 17 C 0.14 5.53 4.30 45.79 0.20 5.73 16 18 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 19 C -0.12 -4.42 5.27 30.89 0.16 -4.26 16 20 N -0.61 -31.87 2.43 -664.47 -1.61 -33.49 16 21 C -0.23 -13.42 10.28 84.03 0.86 -12.56 16 22 H 0.07 4.17 7.84 -2.91 -0.02 4.14 16 23 C -0.07 -3.99 5.48 84.86 0.47 -3.52 16 24 N -0.95 -60.07 10.40 21.65 0.23 -59.84 16 25 Si 0.96 49.98 29.56 68.60 2.03 52.01 16 26 H -0.30 -15.96 7.11 99.48 0.71 -15.25 16 27 H -0.29 -14.84 7.11 99.48 0.71 -14.14 16 28 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16 29 C 0.19 9.22 4.10 86.85 0.36 9.57 16 30 C 0.19 3.69 10.71 85.03 0.91 4.61 16 31 N -0.55 -11.17 9.18 -307.80 -2.82 -13.99 16 32 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.07 0.93 8.10 -2.39 -0.02 0.91 16 36 H 0.07 0.92 8.10 -2.39 -0.02 0.90 16 37 H 0.17 2.67 8.06 -2.91 -0.02 2.65 16 38 H 0.15 3.88 7.73 -2.91 -0.02 3.86 16 39 H 0.41 7.24 6.65 -92.71 -0.62 6.63 16 40 H 0.07 1.77 8.14 -2.39 -0.02 1.76 16 41 H 0.11 1.92 7.98 -2.39 -0.02 1.90 16 42 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 43 H 0.11 2.28 7.75 -2.39 -0.02 2.27 16 44 H 0.09 2.39 8.00 -2.38 -0.02 2.37 16 45 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.24 15.09 8.31 -92.71 -0.77 14.32 16 47 H 0.01 0.42 6.02 -2.39 -0.01 0.40 16 48 H 0.00 -0.17 7.56 -2.39 -0.02 -0.19 16 49 H 0.20 2.27 6.41 -2.91 -0.02 2.25 16 Total: -1.00 -83.73 387.92 1.14 -82.59 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: 0.35 Total: 14.57 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: 6.17 Total: 14.34 kcal Atomic # 7 Polarization: -122.84 SS G_CDS: -6.45 Total: -129.29 kcal Atomic # 8 Polarization: -33.27 SS G_CDS: -0.95 Total: -34.22 kcal Atomic # 14 Polarization: 49.98 SS G_CDS: 2.03 Total: 52.01 kcal Total: -83.73 1.14 -82.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047080865.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.586 kcal (2) G-P(sol) polarization free energy of solvation -83.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds