Wall clock time and date at job start Wed Apr 1 2020 05:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42907 * 109.47188 * 2 1 4 4 C 1.35678 * 116.99944 * 179.97438 * 3 2 1 5 5 C 1.38898 * 119.62261 * 180.30275 * 4 3 2 6 6 C 1.39571 * 118.94395 * 180.22580 * 5 4 3 7 7 C 1.48163 * 120.88961 * 179.75082 * 6 5 4 8 8 O 1.21517 * 119.99969 * 6.10208 * 7 6 5 9 9 N 1.34775 * 120.00198 * 186.09752 * 7 6 5 10 10 C 1.46497 * 120.00171 * 185.22075 * 9 7 6 11 11 H 1.08992 * 109.18368 * 53.04991 * 10 9 7 12 12 C 1.57471 * 108.71086 * 293.24124 * 10 9 7 13 13 C 1.53971 * 108.07584 * 294.31785 * 12 10 9 14 14 H 1.08998 * 112.99495 * 169.26786 * 13 12 10 15 15 C 1.55428 * 107.20167 * 294.65273 * 13 12 10 16 16 C 1.55170 * 100.35063 * 73.66178 * 15 13 12 17 17 H 1.09000 * 112.48422 * 162.66728 * 16 15 13 18 18 C 1.52987 * 109.32538 * 172.60711 * 10 9 7 19 19 N 1.47791 * 104.25597 * 40.54977 * 16 15 13 20 20 C 1.36935 * 125.85575 * 153.50673 * 19 16 15 21 21 H 1.08002 * 120.00391 * 154.72653 * 20 19 16 22 22 C 1.38821 * 119.99942 * 334.71903 * 20 19 16 23 23 N 1.31617 * 119.99809 * 161.50132 * 22 20 19 24 24 Si 1.86795 * 120.00092 * 341.50044 * 22 20 19 25 25 H 1.48500 * 109.47149 * 89.73292 * 24 22 20 26 26 H 1.48497 * 109.47016 * 209.73285 * 24 22 20 27 27 H 1.48508 * 109.47058 * 329.73345 * 24 22 20 28 28 C 1.47076 * 108.28873 * 333.53910 * 19 16 15 29 29 C 1.39964 * 118.22085 * 359.48406 * 6 5 4 30 30 C 1.37975 * 119.13305 * 0.27420 * 29 6 5 31 31 N 1.31912 * 120.97966 * 359.97438 * 30 29 6 32 32 H 1.09006 * 109.46691 * 59.99842 * 1 2 3 33 33 H 1.09000 * 109.46959 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.47348 * 300.00450 * 1 2 3 35 35 H 1.09000 * 109.47247 * 240.00305 * 2 1 3 36 36 H 1.08994 * 109.47371 * 120.00207 * 2 1 3 37 37 H 1.07994 * 120.52400 * 359.97438 * 5 4 3 38 38 H 0.97004 * 119.99950 * 5.21842 * 9 7 6 39 39 H 1.08998 * 109.73610 * 174.87457 * 12 10 9 40 40 H 1.08997 * 110.16134 * 54.00745 * 12 10 9 41 41 H 1.09006 * 111.23566 * 191.43519 * 15 13 12 42 42 H 1.09000 * 111.23797 * 315.88768 * 15 13 12 43 43 H 1.08998 * 109.53542 * 305.28331 * 18 10 9 44 44 H 1.09001 * 109.53218 * 185.05743 * 18 10 9 45 45 H 0.96998 * 120.00264 * 180.02562 * 23 22 20 46 46 H 1.08995 * 109.98087 * 241.74081 * 28 19 16 47 47 H 1.09005 * 109.97987 * 120.45741 * 28 19 16 48 48 H 1.07996 * 120.43430 * 180.24752 * 29 6 5 49 49 H 1.07998 * 119.51242 * 180.02562 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3514 1.5251 0.0005 5 6 3.8739 2.8120 0.0069 6 6 5.2596 2.9785 0.0026 7 6 5.8632 4.3316 0.0036 8 8 5.1555 5.3125 0.1201 9 7 7.1972 4.4746 -0.1246 10 6 7.8061 5.8020 -0.0092 11 1 7.4861 6.2628 0.9252 12 6 7.3350 6.6815 -1.2274 13 6 7.9157 6.0661 -2.5138 14 1 7.4923 6.4972 -3.4209 15 6 9.4616 6.2067 -2.4334 16 6 9.7857 5.1195 -1.3747 17 1 10.8379 4.8352 -1.3778 18 6 9.3296 5.6619 -0.0087 19 7 8.8956 3.9931 -1.7254 20 6 9.1291 2.6715 -1.4535 21 1 8.3011 1.9838 -1.3649 22 6 10.4303 2.2155 -1.2919 23 7 10.6554 1.0692 -0.6857 24 14 11.8617 3.2289 -1.9348 25 1 12.3175 4.1678 -0.8784 26 1 12.9790 2.3254 -2.3097 27 1 11.4266 3.9994 -3.1275 28 6 7.7162 4.5349 -2.4173 29 6 6.0639 1.8330 0.0030 30 6 5.4634 0.5907 0.0019 31 7 4.1497 0.4715 0.0010 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3634 0.5139 0.8899 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8899 37 1 3.2183 3.6702 0.0111 38 1 7.7542 3.6985 -0.2933 39 1 7.7048 7.7002 -1.1108 40 1 6.2467 6.6903 -1.2858 41 1 9.9292 5.9771 -3.3909 42 1 9.7502 7.1976 -2.0829 43 1 9.6317 4.9701 0.7775 44 1 9.7851 6.6364 0.1670 45 1 11.5646 0.7507 -0.5724 46 1 6.8147 4.3122 -1.8468 47 1 7.6406 4.1055 -3.4164 48 1 7.1403 1.9203 0.0038 49 1 6.0781 -0.2973 0.0027 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047144895.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:39 Heat of formation + Delta-G solvation = 47.148555 kcal Electronic energy + Delta-G solvation = -32277.772356 eV Core-core repulsion = 28208.281569 eV Total energy + Delta-G solvation = -4069.490787 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.14211 -40.30558 -38.45601 -37.50131 -33.81339 -33.51553 -32.35487 -32.07720 -31.18188 -30.86963 -29.69927 -28.25038 -25.62200 -24.84413 -23.21870 -23.01366 -22.92736 -21.75719 -20.24820 -20.21158 -19.29490 -18.37797 -17.09510 -16.85874 -16.27489 -16.23876 -16.05646 -15.45868 -15.04224 -14.83747 -14.40845 -14.10967 -13.85560 -13.76188 -13.53016 -13.29127 -13.17100 -12.91174 -12.68833 -12.60949 -12.32567 -12.28683 -12.13260 -11.90434 -11.77794 -11.49133 -11.41315 -11.34401 -11.09952 -10.85799 -10.77929 -10.36478 -10.19668 -9.91393 -9.88030 -9.68829 -9.67355 -9.38472 -9.22396 -8.74438 -8.34766 -7.93975 -7.16675 -6.22041 -3.60054 0.96463 1.37113 2.98241 3.14071 3.25024 3.33253 3.35445 3.74809 4.09197 4.30828 4.45219 4.72944 4.91189 4.94340 4.97599 5.00177 5.10109 5.19198 5.20536 5.23130 5.26570 5.30912 5.42592 5.57026 5.57578 5.63288 5.68924 5.71577 5.80590 5.87377 5.90633 5.96070 6.04084 6.09731 6.14409 6.26885 6.33095 6.35900 6.39343 6.51302 6.55124 6.55391 6.71370 6.76235 6.81144 7.10176 7.34250 7.52901 7.96383 8.04409 8.24679 8.57525 8.77244 9.41264 9.95651 10.92363 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014257 B = 0.003805 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.499600 B = 7357.346924 C = 8725.863572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.067 3.933 3 O -0.309 6.309 4 C 0.308 3.692 5 C -0.138 4.138 6 C -0.052 4.052 7 C 0.543 3.457 8 O -0.553 6.553 9 N -0.687 5.687 10 C 0.161 3.839 11 H 0.068 0.932 12 C -0.124 4.124 13 C -0.102 4.102 14 H 0.082 0.918 15 C -0.130 4.130 16 C 0.136 3.864 17 H 0.069 0.931 18 C -0.139 4.139 19 N -0.603 5.603 20 C -0.278 4.278 21 H 0.101 0.899 22 C 0.038 3.962 23 N -0.896 5.896 24 Si 0.889 3.111 25 H -0.283 1.283 26 H -0.304 1.304 27 H -0.271 1.271 28 C 0.108 3.892 29 C -0.171 4.171 30 C 0.137 3.863 31 N -0.530 5.530 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.149 0.851 38 H 0.436 0.564 39 H 0.063 0.937 40 H 0.079 0.921 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.268 0.732 46 H 0.062 0.938 47 H 0.021 0.979 48 H 0.164 0.836 49 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.054 3.349 1.132 10.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.009 4.009 3 O -0.217 6.217 4 C 0.129 3.871 5 C -0.160 4.160 6 C -0.063 4.063 7 C 0.328 3.672 8 O -0.433 6.433 9 N -0.353 5.353 10 C 0.056 3.944 11 H 0.086 0.914 12 C -0.162 4.162 13 C -0.121 4.121 14 H 0.100 0.900 15 C -0.168 4.168 16 C 0.030 3.970 17 H 0.086 0.914 18 C -0.179 4.179 19 N -0.331 5.331 20 C -0.404 4.404 21 H 0.118 0.882 22 C -0.164 4.164 23 N -0.537 5.537 24 Si 0.722 3.278 25 H -0.212 1.212 26 H -0.232 1.232 27 H -0.197 1.197 28 C -0.017 4.017 29 C -0.191 4.191 30 C -0.018 4.018 31 N -0.254 5.254 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.166 0.834 38 H 0.291 0.709 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.087 0.913 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.039 0.961 48 H 0.181 0.819 49 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -10.950 3.087 1.292 11.450 hybrid contribution 1.756 0.612 -0.567 1.944 sum -9.194 3.700 0.725 9.937 Atomic orbital electron populations 1.21816 0.93267 1.02685 1.03233 1.22561 0.94476 0.81334 1.02515 1.86216 1.16853 1.30375 1.88222 1.19577 0.83982 0.89628 0.93941 1.21032 0.94602 0.96026 1.04307 1.20256 0.93022 0.94445 0.98542 1.18139 0.83454 0.87685 0.77877 1.90685 1.62021 1.39375 1.51229 1.47536 1.06870 1.13202 1.67648 1.21528 0.92515 0.83044 0.97276 0.91376 1.22847 1.01628 0.97678 0.94082 1.22514 0.95415 0.96802 0.97368 0.89998 1.23021 0.95919 0.98393 0.99504 1.21951 0.95022 0.87919 0.92092 0.91403 1.22420 0.93951 1.01045 1.00504 1.45234 1.20649 1.02287 1.64883 1.18691 0.93481 0.82711 1.45546 0.88180 1.25160 0.97436 0.95691 0.98085 1.69743 1.21283 1.21167 1.41495 0.86807 0.82328 0.78644 0.80036 1.21181 1.23207 1.19652 1.22286 0.92777 0.91176 0.95415 1.22783 1.03278 0.92340 1.00739 1.22436 0.88489 0.97762 0.93076 1.67193 1.07039 1.33204 1.17997 0.91713 0.90456 0.91734 0.91655 0.91700 0.83361 0.70900 0.91818 0.90283 0.91691 0.91280 0.90961 0.91272 0.92238 0.92042 0.96085 0.81903 0.81498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.28 37.16 0.38 -0.89 16 2 C 0.07 0.76 6.03 37.16 0.22 0.98 16 3 O -0.31 -4.46 10.11 -18.74 -0.19 -4.65 16 4 C 0.31 4.92 7.49 -17.16 -0.13 4.79 16 5 C -0.14 -2.28 9.61 -38.84 -0.37 -2.66 16 6 C -0.05 -0.91 5.91 -104.68 -0.62 -1.53 16 7 C 0.54 10.08 5.89 -12.18 -0.07 10.01 16 8 O -0.55 -11.04 14.86 5.35 0.08 -10.96 16 9 N -0.69 -12.57 2.74 -52.30 -0.14 -12.72 16 10 C 0.16 2.71 2.91 -65.50 -0.19 2.52 16 11 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 12 C -0.12 -1.92 5.30 -23.79 -0.13 -2.05 16 13 C -0.10 -1.65 4.27 -87.92 -0.38 -2.03 16 14 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 15 C -0.13 -2.14 6.19 -24.29 -0.15 -2.29 16 16 C 0.14 2.61 2.98 -65.61 -0.20 2.42 16 17 H 0.07 1.44 2.41 -51.93 -0.13 1.31 16 18 C -0.14 -2.36 5.44 -26.28 -0.14 -2.50 16 19 N -0.60 -12.64 1.48 -161.37 -0.24 -12.88 16 20 C -0.28 -6.65 8.55 -15.06 -0.13 -6.78 16 21 H 0.10 2.45 5.88 -52.49 -0.31 2.14 16 22 C 0.04 0.97 5.46 -17.43 -0.10 0.88 16 23 N -0.90 -24.15 13.97 55.49 0.78 -23.38 16 24 Si 0.89 20.62 24.62 -169.99 -4.19 16.43 16 25 H -0.28 -6.35 6.69 56.52 0.38 -5.98 16 26 H -0.30 -7.30 7.11 56.52 0.40 -6.90 16 27 H -0.27 -6.25 7.00 56.52 0.40 -5.85 16 28 C 0.11 2.07 5.77 -2.83 -0.02 2.05 16 29 C -0.17 -2.92 9.40 -39.03 -0.37 -3.28 16 30 C 0.14 2.15 11.17 -17.61 -0.20 1.96 16 31 N -0.53 -8.41 9.18 -13.38 -0.12 -8.54 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 36 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 37 H 0.15 2.37 7.75 -52.49 -0.41 1.96 16 38 H 0.44 8.57 2.50 -40.82 -0.10 8.46 16 39 H 0.06 0.85 8.03 -51.93 -0.42 0.44 16 40 H 0.08 1.33 6.49 -51.93 -0.34 1.00 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.07 0.96 7.82 -51.93 -0.41 0.55 16 43 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 44 H 0.07 0.98 8.02 -51.93 -0.42 0.56 16 45 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 46 H 0.06 1.20 3.89 -54.91 -0.21 0.99 16 47 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.16 3.04 4.48 -52.49 -0.24 2.80 16 49 H 0.17 2.27 8.06 -52.49 -0.42 1.85 16 LS Contribution 365.40 15.07 5.51 5.51 Total: -1.00 -27.78 365.40 -7.87 -35.64 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: -6.78 Total: 13.94 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -2.57 Total: 1.60 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: 0.27 Total: -57.51 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: -0.11 Total: -15.61 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.19 Total: 16.43 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -27.78 -7.87 -35.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047144895.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.793 kcal (2) G-P(sol) polarization free energy of solvation -27.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds